BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0407.0013.p (331 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DBP9.1 B1DBP9_9BACL Transcriptional regulator, LysR family 317 1e-84 C2MJG4.1 C2MJG4_BACCE Putative uncharacterized protein 307 8e-82 C2W6W3.1 C2W6W3_BACCE Putative uncharacterized protein 306 2e-81 C3BJA1.1 C3BJA1_9BACI Putative uncharacterized protein 305 3e-81 C3B2F5.1 C3B2F5_BACMY Putative uncharacterized protein 305 3e-81 >B1DBP9.1 B1DBP9_9BACL Transcriptional regulator, LysR family Length = 299 Score = 317 bits (812), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 147/286 (51%), Positives = 207/286 (72%) Query: 29 MNNTQIRLFVSIAESGSFTKAGQDMNMTQPAVSRAISXXXXXXXXXXXXRDRRSGLMLTD 88 MN + ++L V+I+E+ SFT AG+ MNMTQPAVSRA++ RDRR G+ LT Sbjct: 1 MNKSLLQLIVAISETRSFTTAGEKMNMTQPAVSRAVTTLERELGVTLLIRDRRHGVALTP 60 Query: 89 IGKRILVIFREILIGYDKVEQEISAEKGLEKGLIRIGAFPVASAHLVPKIIRSIASSYPE 148 +G+RI+ FREIL GYDK++QEI++EKG+E G +RIGAFPVA+ + VPK+I I YP Sbjct: 61 VGERIVRTFREILQGYDKIDQEIASEKGMETGSVRIGAFPVAATYFVPKLISHIKQQYPN 120 Query: 149 IEIRLYEGTVAEVKEWLEARIIDVGLIIPPDGDFDFVPLFREKLYAVLQDDHPLRHKAVI 208 +E + EGT+A+V+EWL+ R IDVGL+IP D PL+RE +YAV++DDHPL K +I Sbjct: 121 LEFSIVEGTIADVQEWLDNREIDVGLLIPSDKTAHSYPLYREGIYAVMRDDHPLNEKGII 180 Query: 209 CVKDLEDEPMLICRSGYEPPVVDLFQRGGSKLNVKYEVSSYLTALNMVKEGLAVGVMSQL 268 +DL DEPMLIC++GYEPPV+ F+ G +KY + +Y TAL M+ G + VMS+L Sbjct: 181 SPEDLRDEPMLICKAGYEPPVLKWFEGSGETPTIKYILYNYRTALQMILAGEGLAVMSEL 240 Query: 269 SLLSLPPGVIIRELAPDAYRDIHLAVNSLAEASIAVRLFIDTALRL 314 SLL LPPG+++++++P AYRDIH+A L + +IAV+ F+++A +L Sbjct: 241 SLLDLPPGIVLKQISPAAYRDIHIASGPLEDCTIAVKTFMESARKL 286 >C2MJG4.1 C2MJG4_BACCE Putative uncharacterized protein Length = 301 Score = 307 bits (787), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 139/293 (47%), Positives = 208/293 (70%) Query: 17 MNYYYKGHTKTVMNNTQIRLFVSIAESGSFTKAGQDMNMTQPAVSRAISXXXXXXXXXXX 76 MN +Y+ + + VM TQ+++ + E GSFTKA + +NMTQPAVS AIS Sbjct: 1 MNLFYEEYKRLVMTITQLQVLIKTVELGSFTKAARVLNMTQPAVSHAISSIESELGVTIL 60 Query: 77 XRDRRSGLMLTDIGKRILVIFREILIGYDKVEQEISAEKGLEKGLIRIGAFPVASAHLVP 136 RD+R GL++TD+G RILV REIL G +K+EQE++ EKG E G IRIG+FP ASAH +P Sbjct: 61 IRDKRQGLLVTDVGNRILVHIREILNGVEKIEQEVAMEKGHEVGTIRIGSFPSASAHFLP 120 Query: 137 KIIRSIASSYPEIEIRLYEGTVAEVKEWLEARIIDVGLIIPPDGDFDFVPLFREKLYAVL 196 K+I YP +E+ L EGT+ EV++WL +R++D+G++I P+ + + VPL + K+ +L Sbjct: 121 KMINHFKEKYPNLEVVLCEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLTKGKMVVIL 180 Query: 197 QDDHPLRHKAVICVKDLEDEPMLICRSGYEPPVVDLFQRGGSKLNVKYEVSSYLTALNMV 256 ++DHPL K I ++DLE+EP+++C+ GYEPP++D+F++ L +Y +S+ TALNM+ Sbjct: 181 REDHPLCKKDAITIRDLENEPIILCKGGYEPPIIDMFKQANVPLRAEYVISTVTTALNMI 240 Query: 257 KEGLAVGVMSQLSLLSLPPGVIIRELAPDAYRDIHLAVNSLAEASIAVRLFID 309 +EGL + ++++LSL +LP V REL P +R+I LAV SL ++SIAV+LFI+ Sbjct: 241 QEGLGIAILAELSLTNLPKNVQTRELEPQVWREIALAVPSLKDSSIAVQLFIE 293 >C2W6W3.1 C2W6W3_BACCE Putative uncharacterized protein Length = 290 Score = 306 bits (783), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 144/281 (51%), Positives = 204/281 (72%) Query: 29 MNNTQIRLFVSIAESGSFTKAGQDMNMTQPAVSRAISXXXXXXXXXXXXRDRRSGLMLTD 88 M TQ+++FV + E GSFTKA + +NMTQPAVS A+S RD+R GL+LTD Sbjct: 1 MTITQLQVFVKVVELGSFTKAARVLNMTQPAVSHAVSSVESELGVTLIIRDKRKGLILTD 60 Query: 89 IGKRILVIFREILIGYDKVEQEISAEKGLEKGLIRIGAFPVASAHLVPKIIRSIASSYPE 148 +G RILV FREIL G +KVEQE++ EKG E G IRIG+FP ASA+ +PK+I YP Sbjct: 61 VGNRILVHFREILNGVEKVEQEVAMEKGHEVGTIRIGSFPSASAYFLPKMINIFREKYPN 120 Query: 149 IEIRLYEGTVAEVKEWLEARIIDVGLIIPPDGDFDFVPLFREKLYAVLQDDHPLRHKAVI 208 +E+ L+EGT+ EV+EWL +R+IDVG+II P+ + + VPL + K+ VL+DDHPL K I Sbjct: 121 LELVLHEGTLKEVEEWLLSRVIDVGIIILPNKEMEIVPLTKGKMVIVLRDDHPLCKKTTI 180 Query: 209 CVKDLEDEPMLICRSGYEPPVVDLFQRGGSKLNVKYEVSSYLTALNMVKEGLAVGVMSQL 268 ++DLE+EP++IC+ GYEPP++++F++ L ++Y VS+ T+LNM++EGL + ++++L Sbjct: 181 TIQDLENEPIIICKGGYEPPIIEMFKQASVPLRIEYVVSTVTTSLNMIQEGLGLAILAEL 240 Query: 269 SLLSLPPGVIIRELAPDAYRDIHLAVNSLAEASIAVRLFID 309 SL LPP V REL P +R+I LAV SL E+S+AV+L I+ Sbjct: 241 SLSDLPPNVQTRELEPQVWREIALAVPSLKESSLAVQLLIE 281 >C3BJA1.1 C3BJA1_9BACI Putative uncharacterized protein Length = 289 Score = 305 bits (782), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 144/281 (51%), Positives = 204/281 (72%) Query: 29 MNNTQIRLFVSIAESGSFTKAGQDMNMTQPAVSRAISXXXXXXXXXXXXRDRRSGLMLTD 88 M TQ+++F+ + E GSFTKA + +NMTQPAVS AIS RD+R GL+LTD Sbjct: 1 MTITQLQVFIKVVELGSFTKAARVLNMTQPAVSHAISSVESELGVTLIIRDKRKGLILTD 60 Query: 89 IGKRILVIFREILIGYDKVEQEISAEKGLEKGLIRIGAFPVASAHLVPKIIRSIASSYPE 148 +G RILV FREIL G +KVEQE++ EKG E G IRIG+FP ASA+ +P++I YP Sbjct: 61 VGNRILVHFREILNGVEKVEQEVAMEKGHEVGTIRIGSFPSASAYFLPRMINIFREKYPN 120 Query: 149 IEIRLYEGTVAEVKEWLEARIIDVGLIIPPDGDFDFVPLFREKLYAVLQDDHPLRHKAVI 208 +E+ L+EGT+ EV+EWL +R+IDVG++I P+ + + VPL R K+ VL +DHPL K I Sbjct: 121 LELVLHEGTLKEVEEWLLSRVIDVGIVILPNKEMEIVPLTRGKMVVVLHNDHPLCEKEAI 180 Query: 209 CVKDLEDEPMLICRSGYEPPVVDLFQRGGSKLNVKYEVSSYLTALNMVKEGLAVGVMSQL 268 + DLE EP+++ + GYEPP++D+F++ G L V+Y VS+ T+LNM++EGL + ++++L Sbjct: 181 TINDLEGEPIILFKGGYEPPIIDMFKQAGVPLRVEYAVSTVTTSLNMIQEGLGLAILAEL 240 Query: 269 SLLSLPPGVIIRELAPDAYRDIHLAVNSLAEASIAVRLFID 309 SL +LPP V +ELAP +R+I LAV SL E+S+AV+LFI+ Sbjct: 241 SLTNLPPNVKTKELAPQVWREIALAVPSLRESSLAVQLFIE 281 >C3B2F5.1 C3B2F5_BACMY Putative uncharacterized protein Length = 289 Score = 305 bits (782), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 144/281 (51%), Positives = 204/281 (72%) Query: 29 MNNTQIRLFVSIAESGSFTKAGQDMNMTQPAVSRAISXXXXXXXXXXXXRDRRSGLMLTD 88 M TQ+++F+ + E GSFTKA + +NMTQPAVS AIS RD+R GL+LTD Sbjct: 1 MTITQLQVFIKVVELGSFTKAARVLNMTQPAVSHAISSVESELGVTLIIRDKRKGLILTD 60 Query: 89 IGKRILVIFREILIGYDKVEQEISAEKGLEKGLIRIGAFPVASAHLVPKIIRSIASSYPE 148 +G RILV FREIL G +KVEQE++ EKG E G IRIG+FP ASA+ +P++I YP Sbjct: 61 VGNRILVHFREILNGVEKVEQEVAMEKGHEVGTIRIGSFPSASAYFLPRMINIFREKYPN 120 Query: 149 IEIRLYEGTVAEVKEWLEARIIDVGLIIPPDGDFDFVPLFREKLYAVLQDDHPLRHKAVI 208 +E+ L+EGT+ EV+EWL +R+IDVG++I P+ + + VPL R K+ VL +DHPL K I Sbjct: 121 LELVLHEGTLKEVEEWLLSRVIDVGIVILPNKEMEIVPLTRGKMVVVLHNDHPLCEKEAI 180 Query: 209 CVKDLEDEPMLICRSGYEPPVVDLFQRGGSKLNVKYEVSSYLTALNMVKEGLAVGVMSQL 268 + DLE EP+++ + GYEPP++D+F++ G L V+Y VS+ T+LNM++EGL + ++++L Sbjct: 181 TINDLEGEPIILFKGGYEPPIIDMFKQAGVPLRVEYAVSTVTTSLNMIQEGLGLAILAEL 240 Query: 269 SLLSLPPGVIIRELAPDAYRDIHLAVNSLAEASIAVRLFID 309 SL +LPP V +ELAP +R+I LAV SL E+S+AV+LFI+ Sbjct: 241 SLTNLPPNVKTKELAPQVWREIALAVPSLRESSLAVQLFIE 281 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.139 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,834,592,385 Number of extensions: 71790717 Number of successful extensions: 208998 Number of sequences better than 1.0e-05: 9187 Number of HSP's gapped: 207944 Number of HSP's successfully gapped: 9187 Length of query: 331 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 195 Effective length of database: 1,779,438,163 Effective search space: 346990441785 Effective search space used: 346990441785 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)