BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0407.0011.p (200 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q4V1A0.1 Q4V1A0_BACCZ Putative uncharacterized protein 212 1e-53 Q72XD1.1 Q72XD1_BACC1 Putative uncharacterized protein 206 1e-51 B9IRV4.1 B9IRV4_BACCQ Putative uncharacterized protein 206 1e-51 Q814U7.1 Q814U7_BACCR Nitrilotriacetate monooxygenase component ... 205 2e-51 B7JGP7.1 B7JGP7_BACC0 Putative uncharacterized protein 205 2e-51 >Q4V1A0.1 Q4V1A0_BACCZ Putative uncharacterized protein Length = 205 Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 105/202 (51%), Positives = 137/202 (67%), Gaps = 6/202 (2%) Query: 1 MYIAASAQSAHDNYKLLIGSIIPRPIAFVTSINEQGVVNAAPFSFFNIVNDEPPMIMFSC 60 + I S + +NYK LIGSIIPRPIAFVT+I+E+ ++N APFS+FNIV+ PPMI + Sbjct: 5 LSIDPSKNTERENYKFLIGSIIPRPIAFVTTISEEHILNGAPFSYFNIVSSNPPMISLA- 63 Query: 61 LRKATGEMKHTASNILGNGEFVVHIVDEDNVAAINHTSINAPEGVSELELAGLTPVPGQM 120 +++ G K TA NIL + EFV+HIVDE NV +N T+ N P SE+ELA LTPV + Sbjct: 64 IQRLEGRQKDTAKNILDSKEFVIHIVDEQNVEMVNQTATNLPSNQSEIELANLTPVESKK 123 Query: 121 VRVPRIEECRIAMECRLTRHVELGH-----CDMIIGEVLCFHVEDELIHNGRIDAAKLKP 175 V VP I+E +I MEC L R +ELG CD+++G V+ FH+ DE+ GRID L Sbjct: 124 VSVPGIQEAKIRMECVLERSLELGDFDSPGCDLLVGRVVQFHIADEIYSKGRIDPKGLGA 183 Query: 176 VSRLAGASYAAVGRTFDMERPQ 197 VSRLAG +YA +G F +ERPQ Sbjct: 184 VSRLAGHNYAKIGEIFSIERPQ 205 >Q72XD1.1 Q72XD1_BACC1 Putative uncharacterized protein Length = 203 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 107/202 (52%), Positives = 135/202 (66%), Gaps = 7/202 (3%) Query: 1 MYIAASAQSAHDNYKLLIGSIIPRPIAFVTSINEQGVVNAAPFSFFNIVNDEPPMIMFSC 60 + I + QS +NYKLL GSIIPRP+AFVTS+ + GV+N AP+S+FNIV PP+I S Sbjct: 2 LSINPNEQSEKENYKLLTGSIIPRPVAFVTSVTKDGVLNGAPYSYFNIVAANPPLISVSV 61 Query: 61 LRKATGEMKHTASNILGNGEFVVHIVDEDNVAAINHTSINAPEGVSELELAGLTPVPGQM 120 RKA GE K T+ N + GEFVVHI DE VAAIN T+ N P SE+ELA LTP+ + Sbjct: 62 QRKA-GERKDTSRNAIEKGEFVVHISDESYVAAINETAANLPPNESEIELAKLTPIESDV 120 Query: 121 VRVPRIEECRIAMECRLTRHVELG------HCDMIIGEVLCFHVEDELIHNGRIDAAKLK 174 + VP ++E I MEC L R + LG CD++IG V+ FHV + L NGRI A LK Sbjct: 121 ISVPGVKEANIRMECVLERAIPLGGTEDSPACDLLIGRVVRFHVAEHLYENGRIHAEGLK 180 Query: 175 PVSRLAGASYAAVGRTFDMERP 196 PVSRLAG +YA +G F++ RP Sbjct: 181 PVSRLAGHNYAKLGEQFELVRP 202 >B9IRV4.1 B9IRV4_BACCQ Putative uncharacterized protein Length = 203 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 107/202 (52%), Positives = 135/202 (66%), Gaps = 7/202 (3%) Query: 1 MYIAASAQSAHDNYKLLIGSIIPRPIAFVTSINEQGVVNAAPFSFFNIVNDEPPMIMFSC 60 + I + QS +NYKLL GSIIPRP+AFVTS+ + GV+N AP+S+FNIV PP+I S Sbjct: 2 LSINPNEQSEKENYKLLTGSIIPRPVAFVTSVTKDGVLNGAPYSYFNIVAANPPLISVSV 61 Query: 61 LRKATGEMKHTASNILGNGEFVVHIVDEDNVAAINHTSINAPEGVSELELAGLTPVPGQM 120 RKA GE K T+ N + GEFVVHI DE VAAIN T+ N P SE+ELA LTP+ + Sbjct: 62 QRKA-GERKDTSRNAIEKGEFVVHISDESYVAAINETAANLPPNESEIELAKLTPIESDV 120 Query: 121 VRVPRIEECRIAMECRLTRHVELG------HCDMIIGEVLCFHVEDELIHNGRIDAAKLK 174 + VP ++E I MEC L R + LG CD++IG V+ FHV + L NGRI A LK Sbjct: 121 ISVPGVKEANIRMECVLERAIPLGGTEDSPACDLLIGRVVRFHVAEHLYENGRIHAEGLK 180 Query: 175 PVSRLAGASYAAVGRTFDMERP 196 PVSRLAG +YA +G F++ RP Sbjct: 181 PVSRLAGHNYAKLGEQFELVRP 202 >Q814U7.1 Q814U7_BACCR Nitrilotriacetate monooxygenase component B EC=1.14.13.- Length = 203 Score = 205 bits (522), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 105/202 (51%), Positives = 136/202 (67%), Gaps = 7/202 (3%) Query: 1 MYIAASAQSAHDNYKLLIGSIIPRPIAFVTSINEQGVVNAAPFSFFNIVNDEPPMIMFSC 60 + I + Q+ DNYKLL GSIIPRP+AFVTS+ ++GV+N AP+S+FNIV PP+I S Sbjct: 2 LSINPNEQTEKDNYKLLTGSIIPRPVAFVTSVTKEGVLNGAPYSYFNIVAANPPLISVSV 61 Query: 61 LRKATGEMKHTASNILGNGEFVVHIVDEDNVAAINHTSINAPEGVSELELAGLTPVPGQM 120 RKA GE K T+ N + GEFVVHI DE VAAIN T+ N P SE+ELA LTP+ ++ Sbjct: 62 QRKA-GERKDTSRNAIEKGEFVVHISDESYVAAINETAANLPPNESEIELAKLTPIESEV 120 Query: 121 VRVPRIEECRIAMECRLTRHVELG------HCDMIIGEVLCFHVEDELIHNGRIDAAKLK 174 + VP ++E I MEC L R + LG CD++IG V+ FHV + L GRI A LK Sbjct: 121 ISVPGVKEANIRMECVLERAIPLGGTEDSPACDLLIGRVVRFHVAEHLYEKGRIHAEGLK 180 Query: 175 PVSRLAGASYAAVGRTFDMERP 196 P+SRLAG +YA +G F++ RP Sbjct: 181 PISRLAGHNYAKLGEQFELVRP 202 >B7JGP7.1 B7JGP7_BACC0 Putative uncharacterized protein Length = 203 Score = 205 bits (522), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 106/202 (52%), Positives = 135/202 (66%), Gaps = 7/202 (3%) Query: 1 MYIAASAQSAHDNYKLLIGSIIPRPIAFVTSINEQGVVNAAPFSFFNIVNDEPPMIMFSC 60 + I + Q+ +NYKLL GSIIPRP+AFVTS+ + GV+N AP+S+FNIV PP+I S Sbjct: 2 LSINPNEQTEKENYKLLTGSIIPRPVAFVTSVTKDGVLNGAPYSYFNIVAANPPLISVSV 61 Query: 61 LRKATGEMKHTASNILGNGEFVVHIVDEDNVAAINHTSINAPEGVSELELAGLTPVPGQM 120 RKA GE K T+ N + GEFVVHI DE VAAIN T+ N P SE+ELA LTP+ + Sbjct: 62 QRKA-GERKDTSRNAIEKGEFVVHISDESYVAAINETAANLPSNESEIELAKLTPIESDV 120 Query: 121 VRVPRIEECRIAMECRLTRHVELG------HCDMIIGEVLCFHVEDELIHNGRIDAAKLK 174 + VP ++E I MEC L R + LG CD++IG V+ FHV + L NGRI A LK Sbjct: 121 ISVPGVKEANIRMECVLERAIPLGGTEDSPACDLLIGRVVRFHVAEHLYENGRIHAEGLK 180 Query: 175 PVSRLAGASYAAVGRTFDMERP 196 PVSRLAG +YA +G F++ RP Sbjct: 181 PVSRLAGHNYAKLGEQFELVRP 202 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,164,390,422 Number of extensions: 45883049 Number of successful extensions: 88828 Number of sequences better than 1.0e-05: 746 Number of HSP's gapped: 87843 Number of HSP's successfully gapped: 746 Length of query: 200 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 71 Effective length of database: 1,845,385,268 Effective search space: 131022354028 Effective search space used: 131022354028 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)