BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0407.0007.p (358 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D9L7.1 B1D9L7_9BACL ABC transporter related 575 e-162 C1PCH0.1 C1PCH0_BACCO ABC transporter related 565 e-159 Q2BAW7.1 Q2BAW7_9BACI Spermidine/putrescine ABC transporter, ATP... 562 e-158 Q92DL6.2 POTA_LISIN Spermidine/putrescine import ATP-binding pro... 533 e-149 C1L175.1 C1L175_LISMC Putative spermidine/putrescine ABC transpo... 531 e-149 >B1D9L7.1 B1D9L7_9BACL ABC transporter related Length = 368 Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust. Identities = 282/352 (80%), Positives = 302/352 (85%) Query: 1 VIKQYDDEEPVLKGVSFEIERGKFYTLLGPSGCGKTTILRLIAGFAEPTKGSIYLNGQII 60 V KQYDD+ VL VSFEIERGKFYTLLGPSGCGKTTILRLIAGF EP+KG IY NG++I Sbjct: 12 VTKQYDDQTTVLSEVSFEIERGKFYTLLGPSGCGKTTILRLIAGFIEPSKGQIYFNGKVI 71 Query: 61 NHIPANERQVNTVFQDYALFPHLNVFENVAFGLRIKKLKKDVITHKVQEALRFVNLVGYE 120 N IP NERQVNTVFQDYALFPHLNVFENVAFGLRIKKLK IT KV+EALRFVNL GYE Sbjct: 72 NRIPPNERQVNTVFQDYALFPHLNVFENVAFGLRIKKLKNAAITAKVKEALRFVNLEGYE 131 Query: 121 QRAINEMSGGQRQRVAIARAIVNEPQVXXXXXXXXXXXXXXRTEMQYILREMQQRLGITF 180 R I+EMSGGQRQRVAIARAIVNEP+V RTEMQY LRE+Q+RLGITF Sbjct: 132 TRNISEMSGGQRQRVAIARAIVNEPEVILLDEPLSALDLKLRTEMQYELRELQRRLGITF 191 Query: 181 IFVTHDQEEALAMSDWIFVMNGGRIEQSGTPNDIYDEPINRFVADFIGESNIVPGVMIED 240 IFVTHDQEEALAMSD IFV+N G+IEQSGTPNDIYDEPINRFVADFIGESNIVPG M +D Sbjct: 192 IFVTHDQEEALAMSDEIFVLNQGKIEQSGTPNDIYDEPINRFVADFIGESNIVPGRMKQD 251 Query: 241 YLVEFNGHRFECVDAGLRRNEAVEIVIRPEDLEIAALEQGKLRVRVDSQLFRGVHYEISC 300 + VEF G FECVD GL NE VEI+IRPEDLEI EQGKL+VRVDSQLFRGVHYEISC Sbjct: 252 FEVEFAGRAFECVDQGLNPNEPVEIMIRPEDLEITTTEQGKLQVRVDSQLFRGVHYEISC 311 Query: 301 YDESGHEWLVHSTRKAEVGSEIGLYFDPEAIHVMRFGETEEEFDKRLEAYGE 352 YDE+G+EWLVHST+KA VG +IGLYFDPEAIHVMRFGETEEEFDKRL+AY E Sbjct: 312 YDEAGNEWLVHSTKKAAVGEQIGLYFDPEAIHVMRFGETEEEFDKRLDAYSE 363 >C1PCH0.1 C1PCH0_BACCO ABC transporter related Length = 366 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 273/353 (77%), Positives = 303/353 (85%) Query: 1 VIKQYDDEEPVLKGVSFEIERGKFYTLLGPSGCGKTTILRLIAGFAEPTKGSIYLNGQII 60 V KQYDD+ +L VSFEIERGKFYTLLGPSGCGKTTILRLIAGF PTKG+IY+NG+I+ Sbjct: 12 VTKQYDDDPAILDDVSFEIERGKFYTLLGPSGCGKTTILRLIAGFIAPTKGNIYINGKIV 71 Query: 61 NHIPANERQVNTVFQDYALFPHLNVFENVAFGLRIKKLKKDVITHKVQEALRFVNLVGYE 120 N +PAN RQVNTVFQDYALFPHLNV+ENVAFGLRIKK+K VI KV+EAL+FVNL GYE Sbjct: 72 NDVPANRRQVNTVFQDYALFPHLNVYENVAFGLRIKKMKAAVIEQKVKEALKFVNLEGYE 131 Query: 121 QRAINEMSGGQRQRVAIARAIVNEPQVXXXXXXXXXXXXXXRTEMQYILREMQQRLGITF 180 R I+EMSGGQRQRVAIARAIVNEP+V RTEMQY LRE+Q+RLGITF Sbjct: 132 NREISEMSGGQRQRVAIARAIVNEPEVILLDEPLSALDLKLRTEMQYELRELQRRLGITF 191 Query: 181 IFVTHDQEEALAMSDWIFVMNGGRIEQSGTPNDIYDEPINRFVADFIGESNIVPGVMIED 240 IFVTHDQEEALAMSD IFV+N G+I+QSGTP DIYDEPINRFVADFIGESNI+PG MI+D Sbjct: 192 IFVTHDQEEALAMSDEIFVINNGKIQQSGTPTDIYDEPINRFVADFIGESNILPGKMIKD 251 Query: 241 YLVEFNGHRFECVDAGLRRNEAVEIVIRPEDLEIAALEQGKLRVRVDSQLFRGVHYEISC 300 ++VEFNGH FECVD G NE VEIVIRPEDLEI E+G L+VRVD+QLFRGVHYEI C Sbjct: 252 FVVEFNGHAFECVDRGFHPNEPVEIVIRPEDLEITTPEKGNLKVRVDTQLFRGVHYEICC 311 Query: 301 YDESGHEWLVHSTRKAEVGSEIGLYFDPEAIHVMRFGETEEEFDKRLEAYGEV 353 YDE G+EWLVHST+KA+VG IGLYF+PEAIHVMRFGETEEEFD+RLEAY EV Sbjct: 312 YDEEGNEWLVHSTKKAKVGDTIGLYFEPEAIHVMRFGETEEEFDRRLEAYDEV 364 >Q2BAW7.1 Q2BAW7_9BACI Spermidine/putrescine ABC transporter, ATP-binding protein Length = 368 Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust. Identities = 275/357 (77%), Positives = 304/357 (85%), Gaps = 1/357 (0%) Query: 1 VIKQYDDEEPVLKGVSFEIERGKFYTLLGPSGCGKTTILRLIAGFAEPTKGSIYLNGQII 60 V KQYD++ PVL VSF+IERGKFYTLLGPSGCGKTTILRLIAGF EPT+GSI+ NGQ I Sbjct: 12 VTKQYDNDSPVLDAVSFDIERGKFYTLLGPSGCGKTTILRLIAGFIEPTEGSIFFNGQKI 71 Query: 61 NHIPANERQVNTVFQDYALFPHLNVFENVAFGLRIKKLKKDVITHKVQEALRFVNLVGYE 120 N +PAN RQVNTVFQDYALFPHLNVFENVAFGLRIKK+K I +V+EAL+FVNL GYE Sbjct: 72 NKVPANRRQVNTVFQDYALFPHLNVFENVAFGLRIKKMKNQEINEQVKEALKFVNLEGYE 131 Query: 121 QRAINEMSGGQRQRVAIARAIVNEPQVXXXXXXXXXXXXXXRTEMQYILREMQQRLGITF 180 QR I EMSGGQRQRVAIARAIVN+P+V RTEMQY LRE+Q+RLGITF Sbjct: 132 QREIKEMSGGQRQRVAIARAIVNKPEVILLDEPLSALDLKLRTEMQYELRELQRRLGITF 191 Query: 181 IFVTHDQEEALAMSDWIFVMNGGRIEQSGTPNDIYDEPINRFVADFIGESNIVPGVMIED 240 IFVTHDQEEALA+SD IFV+N GRIEQSGTP DIYDEP+NRFVADFIGESNIV G M+ D Sbjct: 192 IFVTHDQEEALALSDEIFVLNKGRIEQSGTPTDIYDEPVNRFVADFIGESNIVEGTMLTD 251 Query: 241 YLVEFNGHRFECVDAGLRRNEAVEIVIRPEDLEIAALEQGKLRVRVDSQLFRGVHYEISC 300 Y VEF G +FECVDAG NE VE+VIRPED+EI EQGKL+VRVDSQLFRGVHYEISC Sbjct: 252 YQVEFAGRKFECVDAGFDLNERVEVVIRPEDMEITPSEQGKLQVRVDSQLFRGVHYEISC 311 Query: 301 YDESGHEWLVHSTRKAEVGSEIGLYFDPEAIHVMRFGETEEEFDKRLEAYGEVESHE 357 +D+ G+EWLVHSTRKA+VG EIGL+FDPEAIHVMR GE+EEEFD+RLEAY E ESHE Sbjct: 312 FDKDGNEWLVHSTRKAKVGDEIGLHFDPEAIHVMRPGESEEEFDRRLEAYQE-ESHE 367 >Q92DL6.2 POTA_LISIN Spermidine/putrescine import ATP-binding protein potA EC=3.6.3.31 Length = 366 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 261/354 (73%), Positives = 294/354 (83%) Query: 1 VIKQYDDEEPVLKGVSFEIERGKFYTLLGPSGCGKTTILRLIAGFAEPTKGSIYLNGQII 60 V KQ+D++ PVL VSFEIE+GKFYTLLGPSGCGKTTILRLIAGF E ++G IYL ++I Sbjct: 13 VTKQFDNDPPVLDNVSFEIEKGKFYTLLGPSGCGKTTILRLIAGFLEASEGQIYLGDKVI 72 Query: 61 NHIPANERQVNTVFQDYALFPHLNVFENVAFGLRIKKLKKDVITHKVQEALRFVNLVGYE 120 N IPAN+R VNTVFQDYALFPHLNV+ENVAFGLRIKKLKKD I KVQEALRFVNL GYE Sbjct: 73 NQIPANKRPVNTVFQDYALFPHLNVYENVAFGLRIKKLKKDAIDKKVQEALRFVNLKGYE 132 Query: 121 QRAINEMSGGQRQRVAIARAIVNEPQVXXXXXXXXXXXXXXRTEMQYILREMQQRLGITF 180 +R I+EMSGGQRQRVAIARAIVNEP+V RTEMQY LR++Q+RLGITF Sbjct: 133 KREISEMSGGQRQRVAIARAIVNEPEVILLDEPLSALDLKLRTEMQYELRDLQKRLGITF 192 Query: 181 IFVTHDQEEALAMSDWIFVMNGGRIEQSGTPNDIYDEPINRFVADFIGESNIVPGVMIED 240 IFVTHDQEEALAMSD IFV+N G I+QSGTP DIYDEPIN+FVADFIGESNIV G MI+D Sbjct: 193 IFVTHDQEEALAMSDEIFVLNKGEIQQSGTPIDIYDEPINKFVADFIGESNIVNGKMIQD 252 Query: 241 YLVEFNGHRFECVDAGLRRNEAVEIVIRPEDLEIAALEQGKLRVRVDSQLFRGVHYEISC 300 + VEF RFECVD G R NE VE+VIRPEDLEI + E+GKL+V VD LFRGVHYE+ C Sbjct: 253 FEVEFVERRFECVDQGFRPNEVVEVVIRPEDLEITSAEKGKLQVTVDWMLFRGVHYEVGC 312 Query: 301 YDESGHEWLVHSTRKAEVGSEIGLYFDPEAIHVMRFGETEEEFDKRLEAYGEVE 354 D G+EWLVH+TRK VG +IGL F+PEAIHVMR GETEEEFDKRL++Y EV+ Sbjct: 313 IDIDGNEWLVHTTRKVRVGDKIGLAFEPEAIHVMRLGETEEEFDKRLDSYDEVQ 366 >C1L175.1 C1L175_LISMC Putative spermidine/putrescine ABC transporter, ATP-binding protein Length = 364 Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust. Identities = 259/354 (73%), Positives = 294/354 (83%) Query: 1 VIKQYDDEEPVLKGVSFEIERGKFYTLLGPSGCGKTTILRLIAGFAEPTKGSIYLNGQII 60 V KQ+D++ PVL VSFEIE+GKFYTLLGPSGCGKTTILRLIAGF E ++G IYL ++I Sbjct: 11 VTKQFDNDPPVLDNVSFEIEKGKFYTLLGPSGCGKTTILRLIAGFLEASEGQIYLGDKVI 70 Query: 61 NHIPANERQVNTVFQDYALFPHLNVFENVAFGLRIKKLKKDVITHKVQEALRFVNLVGYE 120 N IPAN+R VNTVFQDYALFPHLNV+ENVAFGLRIKKLKKD I KV+EALRFVNL GYE Sbjct: 71 NQIPANKRPVNTVFQDYALFPHLNVYENVAFGLRIKKLKKDAIDEKVKEALRFVNLKGYE 130 Query: 121 QRAINEMSGGQRQRVAIARAIVNEPQVXXXXXXXXXXXXXXRTEMQYILREMQQRLGITF 180 +R I+EMSGGQRQRVAIARAIVNEP+V RTEMQY LR++Q+RLGITF Sbjct: 131 KREISEMSGGQRQRVAIARAIVNEPEVILLDEPLSALDLKLRTEMQYELRDLQKRLGITF 190 Query: 181 IFVTHDQEEALAMSDWIFVMNGGRIEQSGTPNDIYDEPINRFVADFIGESNIVPGVMIED 240 IFVTHDQEEALAMSD IFV+N G I+QSGTP DIYDEPIN+FVADFIGESNIV G MI+D Sbjct: 191 IFVTHDQEEALAMSDEIFVLNKGEIQQSGTPIDIYDEPINKFVADFIGESNIVNGKMIQD 250 Query: 241 YLVEFNGHRFECVDAGLRRNEAVEIVIRPEDLEIAALEQGKLRVRVDSQLFRGVHYEISC 300 + VEF RFECVD G R NE VE+VIRPEDLEI + E+G+L+V VD LFRGVHYE+ C Sbjct: 251 FEVEFVERRFECVDQGFRPNEVVEVVIRPEDLEITSAEKGQLQVTVDWMLFRGVHYEVGC 310 Query: 301 YDESGHEWLVHSTRKAEVGSEIGLYFDPEAIHVMRFGETEEEFDKRLEAYGEVE 354 D G+EWLVH+TRK VG +IGL F+PEAIHVMR GETEEEFDKRL++Y EV+ Sbjct: 311 IDTDGNEWLVHTTRKVRVGDKIGLAFEPEAIHVMRLGETEEEFDKRLDSYDEVQ 364 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,074,270,134 Number of extensions: 85812638 Number of successful extensions: 524344 Number of sequences better than 1.0e-05: 87063 Number of HSP's gapped: 405601 Number of HSP's successfully gapped: 92086 Length of query: 358 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 221 Effective length of database: 1,770,017,148 Effective search space: 391173789708 Effective search space used: 391173789708 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)