BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0407.0006.p (268 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D9L8.1 B1D9L8_9BACL Binding-protein-dependent transport system... 371 e-101 A0AGQ0.1 A0AGQ0_LISW6 Complete genome 359 2e-97 Q92DL5.1 Q92DL5_LISIN Lin0798 protein 358 2e-97 Q8Y8T5.1 Q8Y8T5_LISMO Lmo0808 protein 358 2e-97 B8DGF9.1 B8DGF9_LISMH Spermidine/putrescine ABC transporter, per... 358 2e-97 >B1D9L8.1 B1D9L8_9BACL Binding-protein-dependent transport systems inner membrane component Length = 274 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 184/268 (68%), Positives = 211/268 (78%) Query: 1 MKNKGKAYFLIPYYLWIALFVIAPVLLVVYYSLFDLDGHLTLDNYVNFFTPVYMKMMLNS 60 M+ + ++LIPY LWIALFVI P++LVVYYS FD++G T NY FFTPVYMKM L+S Sbjct: 1 MRTNTRNFYLIPYLLWIALFVITPIVLVVYYSFFDVEGDFTFGNYQKFFTPVYMKMTLSS 60 Query: 61 FWYAFLITLFSLLVAYPAAYLLTRTKHKQXXXXXXXXXXXXXXXXKTYAFIGIFGTFGPV 120 FWYAFLIT FSLLVAYPAAYLLTRTKHKQ K YAF+G+FGT+G V Sbjct: 61 FWYAFLITAFSLLVAYPAAYLLTRTKHKQLWLLLIILPSWINLLLKAYAFLGLFGTYGAV 120 Query: 121 NHFFGLLGLGEQQILFTGXXXXXXXXYIFIPFMILPIFSALEELNLSLVDAARDLGASGW 180 N +G+G QQILFT YIFIPFMILPIF++LEE+N SLV AARDLGAS W Sbjct: 121 NGMLKFIGIGTQQILFTDFSFIFVSVYIFIPFMILPIFNSLEEMNPSLVFAARDLGASPW 180 Query: 181 TTFRRVIFPLTISGVRSGCMAVFIPALSLFMITRLIAGNRVITLGTAIEQHFLVTQDWGM 240 T FRRVIFPLT+SGV+SGC AVFIPALSLFMITRLIAGNRVITLGTAIEQHFLVTQDWGM Sbjct: 181 TAFRRVIFPLTLSGVKSGCQAVFIPALSLFMITRLIAGNRVITLGTAIEQHFLVTQDWGM 240 Query: 241 GSTVAVFLIVIMALFMLMTGSSRRGVRQ 268 G+T+AVFLI+ MA+ ML+TGS +RG++ Sbjct: 241 GATIAVFLIIAMAVIMLLTGSRKRGLQN 268 >A0AGQ0.1 A0AGQ0_LISW6 Complete genome Length = 269 Score = 359 bits (921), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 173/269 (64%), Positives = 209/269 (77%), Gaps = 1/269 (0%) Query: 1 MKNKGKAYFLIPYYLWIALFVIAPVLLVVYYSLFDLDGHLTLDNYVNFFTPVYMKMMLNS 60 M + + +L+PY LWI LFV+AP+LL+VYYS FD+DG+ T+DNY++FFTPVY+KM +S Sbjct: 1 MNRRTRTVYLVPYVLWIVLFVVAPILLIVYYSFFDVDGNFTVDNYIHFFTPVYLKMTASS 60 Query: 61 FWYAFLITLFSLLVAYPAAYLLTRTKHKQXXXXXXXXXXXXXXXXKTYAFIGIFGTFGPV 120 FWYAFLIT+F+LL++YP AYLLT+ KHKQ K YAFIGIFGT+G Sbjct: 61 FWYAFLITVFTLLISYPTAYLLTKLKHKQLWLLLIILPTWINLLLKAYAFIGIFGTYGAA 120 Query: 121 NHFFGLLGLGEQQILFTGXXXXXXXXYIFIPFMILPIFSALEELNLSLVDAARDLGASGW 180 N F +LG+G +QILFT YIFIPFMILPIF+A+EE+N +L+ A+RDLGAS Sbjct: 121 NQFLEILGIGSKQILFTDFSFLFVSTYIFIPFMILPIFNAIEEINPTLIQASRDLGASSL 180 Query: 181 TTFRRVIFPLTISGVRSGCMAVFIPALSLFMITRLIAGNRVITLGTAIEQHFLVTQDWGM 240 TTFRRVIFPLT GV+SGC AVFIPALSLFMITRLIAGNRVITLGTAIE+HFLVTQDWGM Sbjct: 181 TTFRRVIFPLTADGVKSGCQAVFIPALSLFMITRLIAGNRVITLGTAIEEHFLVTQDWGM 240 Query: 241 GSTVAVFLIVIMALFMLMTGS-SRRGVRQ 268 GST+ VFLI+ M L M +TGS +RG R+ Sbjct: 241 GSTIGVFLIIAMILIMFLTGSKKKRGARK 269 >Q92DL5.1 Q92DL5_LISIN Lin0798 protein Length = 269 Score = 358 bits (920), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 173/269 (64%), Positives = 209/269 (77%), Gaps = 1/269 (0%) Query: 1 MKNKGKAYFLIPYYLWIALFVIAPVLLVVYYSLFDLDGHLTLDNYVNFFTPVYMKMMLNS 60 M + + +L+PY LWI LFV+AP+LL+VYYS FD+DG+ T+DNY++FFTPVY+KM +S Sbjct: 1 MNRRTRTVYLVPYVLWILLFVVAPILLIVYYSFFDVDGNFTIDNYIHFFTPVYLKMTASS 60 Query: 61 FWYAFLITLFSLLVAYPAAYLLTRTKHKQXXXXXXXXXXXXXXXXKTYAFIGIFGTFGPV 120 FWYAFLIT+F+LL++YP AYLLT+ KHKQ K YAFIGIFGT+G Sbjct: 61 FWYAFLITVFTLLISYPTAYLLTKLKHKQLWLLLIILPTWINLLLKAYAFIGIFGTYGAA 120 Query: 121 NHFFGLLGLGEQQILFTGXXXXXXXXYIFIPFMILPIFSALEELNLSLVDAARDLGASGW 180 N F +LG+G +QILFT YIFIPFMILPIF+A+EE+N +L+ A+RDLGAS Sbjct: 121 NQFLEILGIGSKQILFTDFSFLFVSTYIFIPFMILPIFNAIEEINPTLIQASRDLGASSM 180 Query: 181 TTFRRVIFPLTISGVRSGCMAVFIPALSLFMITRLIAGNRVITLGTAIEQHFLVTQDWGM 240 TTFRRVIFPLT GV+SGC AVFIPALSLFMITRLIAGNRVITLGTAIE+HFLVTQDWGM Sbjct: 181 TTFRRVIFPLTADGVKSGCQAVFIPALSLFMITRLIAGNRVITLGTAIEEHFLVTQDWGM 240 Query: 241 GSTVAVFLIVIMALFMLMTGS-SRRGVRQ 268 GST+ VFLI+ M L M +TGS +RG R+ Sbjct: 241 GSTIGVFLIIAMILIMFLTGSKKKRGARK 269 >Q8Y8T5.1 Q8Y8T5_LISMO Lmo0808 protein Length = 269 Score = 358 bits (920), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 173/269 (64%), Positives = 209/269 (77%), Gaps = 1/269 (0%) Query: 1 MKNKGKAYFLIPYYLWIALFVIAPVLLVVYYSLFDLDGHLTLDNYVNFFTPVYMKMMLNS 60 M + + +L+PY LWI LFV+AP+LL+VYYS FD+DG+ T+DNY++FFTPVY+KM +S Sbjct: 1 MNRRTRTVYLVPYVLWILLFVVAPILLIVYYSFFDVDGNFTVDNYIHFFTPVYLKMTASS 60 Query: 61 FWYAFLITLFSLLVAYPAAYLLTRTKHKQXXXXXXXXXXXXXXXXKTYAFIGIFGTFGPV 120 FWYAFLIT+F+LL++YP AYLLT+ KHKQ K YAFIGIFGT+G Sbjct: 61 FWYAFLITVFTLLISYPTAYLLTKLKHKQLWLLLIILPTWINLLLKAYAFIGIFGTYGAA 120 Query: 121 NHFFGLLGLGEQQILFTGXXXXXXXXYIFIPFMILPIFSALEELNLSLVDAARDLGASGW 180 N F +LG+G +QILFT YIFIPFMILPIF+A+EE+N +L+ A+RDLGAS Sbjct: 121 NQFLEILGIGSKQILFTDFSFLFVSTYIFIPFMILPIFNAIEEINPTLIQASRDLGASSL 180 Query: 181 TTFRRVIFPLTISGVRSGCMAVFIPALSLFMITRLIAGNRVITLGTAIEQHFLVTQDWGM 240 TTFRRVIFPLT GV+SGC AVFIPALSLFMITRLIAGNRVITLGTAIE+HFLVTQDWGM Sbjct: 181 TTFRRVIFPLTADGVKSGCQAVFIPALSLFMITRLIAGNRVITLGTAIEEHFLVTQDWGM 240 Query: 241 GSTVAVFLIVIMALFMLMTGS-SRRGVRQ 268 GST+ VFLI+ M L M +TGS +RG R+ Sbjct: 241 GSTIGVFLIIAMILIMFLTGSKKKRGARK 269 >B8DGF9.1 B8DGF9_LISMH Spermidine/putrescine ABC transporter, permease protein Length = 269 Score = 358 bits (920), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 173/269 (64%), Positives = 209/269 (77%), Gaps = 1/269 (0%) Query: 1 MKNKGKAYFLIPYYLWIALFVIAPVLLVVYYSLFDLDGHLTLDNYVNFFTPVYMKMMLNS 60 M + + +L+PY LWI LFV+AP+LL+VYYS FD+DG+ T+DNY++FFTPVY+KM +S Sbjct: 1 MNRRTRTVYLVPYVLWILLFVVAPILLIVYYSFFDVDGNFTVDNYIHFFTPVYLKMTASS 60 Query: 61 FWYAFLITLFSLLVAYPAAYLLTRTKHKQXXXXXXXXXXXXXXXXKTYAFIGIFGTFGPV 120 FWYAFLIT+F+LL++YP AYLLT+ KHKQ K YAFIGIFGT+G Sbjct: 61 FWYAFLITVFTLLISYPTAYLLTKLKHKQLWLLLIILPTWINLLLKAYAFIGIFGTYGAA 120 Query: 121 NHFFGLLGLGEQQILFTGXXXXXXXXYIFIPFMILPIFSALEELNLSLVDAARDLGASGW 180 N F +LG+G +QILFT YIFIPFMILPIF+A+EE+N +L+ A+RDLGAS Sbjct: 121 NQFLEILGIGSKQILFTDFSFLFVSTYIFIPFMILPIFNAIEEINPTLIQASRDLGASSL 180 Query: 181 TTFRRVIFPLTISGVRSGCMAVFIPALSLFMITRLIAGNRVITLGTAIEQHFLVTQDWGM 240 TTFRRVIFPLT GV+SGC AVFIPALSLFMITRLIAGNRVITLGTAIE+HFLVTQDWGM Sbjct: 181 TTFRRVIFPLTADGVKSGCQAVFIPALSLFMITRLIAGNRVITLGTAIEEHFLVTQDWGM 240 Query: 241 GSTVAVFLIVIMALFMLMTGS-SRRGVRQ 268 GST+ VFLI+ M L M +TGS +RG R+ Sbjct: 241 GSTIGVFLIIAMILIMFLTGSKKKRGARK 269 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.333 0.146 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,365,877,490 Number of extensions: 50070788 Number of successful extensions: 241873 Number of sequences better than 1.0e-05: 2809 Number of HSP's gapped: 239729 Number of HSP's successfully gapped: 2824 Length of query: 268 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 135 Effective length of database: 1,807,701,208 Effective search space: 244039663080 Effective search space used: 244039663080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 130 (54.7 bits)