BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0407.0005.p (275 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C5D526.1 C5D526_9BACI Ornithine carbamoyltransferase EC=2.1.3.3 333 1e-89 C1PCG8.1 C1PCG8_BACCO Binding-protein-dependent transport system... 332 2e-89 B1D9L9.1 B1D9L9_9BACL Binding-protein-dependent transport system... 327 6e-88 Q2BAW5.1 Q2BAW5_9BACI Spermidine/putrescine ABC transporter, per... 320 1e-85 Q5L220.1 Q5L220_GEOKA Spermidine/putrescine ABC transporter (Per... 317 7e-85 >C5D526.1 C5D526_9BACI Ornithine carbamoyltransferase EC=2.1.3.3 Length = 268 Score = 333 bits (853), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 164/241 (68%), Positives = 189/241 (78%) Query: 22 PILYLMYYSFNSGGTMHKFESFTLDYYREVLGDTRLMIIVINXXXXXXXXXXXXXXXXXX 81 PI+YL+YYSFNSGGTMH FE FTL++Y+EV+GDTRL IIV+N Sbjct: 22 PIIYLIYYSFNSGGTMHNFEGFTLEWYKEVIGDTRLWIIVLNTLTIALLSAAISTILGVM 81 Query: 82 XXXXXQRVRSRRAKNTLLSLNNVLIVSPDVIIGASFLILFTIVGIKLGFTSVLLSHVAFS 141 V+ R+ K LL+LNNVLIVSPDVIIGASFLILFTI+GI+LGFTSVLLSH+AFS Sbjct: 82 GALAIYYVKKRQIKQLLLTLNNVLIVSPDVIIGASFLILFTIIGIQLGFTSVLLSHIAFS 141 Query: 142 VPIAVLMILPHLQEMSPTLTDAARDLGASRRDVLTKVVLPIIKPGIFSGFFMALTYSLDD 201 VPI VLM+LP LQEMSPTL DAARDLGA++ DVLTKV+LP I PGIF+GFFMALTYSLDD Sbjct: 142 VPIVVLMVLPKLQEMSPTLIDAARDLGANQWDVLTKVILPFITPGIFAGFFMALTYSLDD 201 Query: 202 FAVTFFVTGNGYSTLSVEIYSRARQGVSLSINALSXXXXXXXXXXVIGYYFLNRRKNRPA 261 FAVTFFVTGNG+STLSVEIYSRARQG+SLSINALS VIGYYF++++ + Sbjct: 202 FAVTFFVTGNGFSTLSVEIYSRARQGISLSINALSTLLFLFTVVLVIGYYFISQKSSSLY 261 Query: 262 G 262 G Sbjct: 262 G 262 >C1PCG8.1 C1PCG8_BACCO Binding-protein-dependent transport systems inner membrane component Length = 267 Score = 332 bits (851), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 168/254 (66%), Positives = 187/254 (73%), Gaps = 8/254 (3%) Query: 22 PILYLMYYSFNSGGTMHKFESFTLDYYREVLGDTRLMIIVINXXXXXXXXXXXXXXXXXX 81 PI YLMYYSFN G MH+F FT ++Y+EV DTRLMIIVIN Sbjct: 22 PIFYLMYYSFNKAGNMHEFSGFTWEWYKEVFQDTRLMIIVINTLVIALLASAISTVIGVM 81 Query: 82 XXXXXQRVRSRRAKNTLLSLNNVLIVSPDVIIGASFLILFTIVGIKLGFTSVLLSHVAFS 141 + V+ RR KN LLSLNNVLIVSPDVIIGASFLILFTI GIKLGFTSVL+SH+AF Sbjct: 82 GALAIRFVKRRRTKNALLSLNNVLIVSPDVIIGASFLILFTIAGIKLGFTSVLVSHIAFC 141 Query: 142 VPIAVLMILPHLQEMSPTLTDAARDLGASRRDVLTKVVLPIIKPGIFSGFFMALTYSLDD 201 +PI VLM+LP LQEMSPTL DAARDLGAS+ DVL+KV+LP I PGIF+GFFMALTYSLDD Sbjct: 142 IPIVVLMVLPKLQEMSPTLIDAARDLGASQWDVLSKVILPYITPGIFAGFFMALTYSLDD 201 Query: 202 FAVTFFVTGNGYSTLSVEIYSRARQGVSLSINALSXXXXXXXXXXVIGYYFLNRRKNRPA 261 FAVTFFVTGNGYSTLSVEIYSRARQG+SL+INALS VIGYY +N+R+ R Sbjct: 202 FAVTFFVTGNGYSTLSVEIYSRARQGISLTINALSTLLFFFSIILVIGYYLVNQRQARTN 261 Query: 262 GPLSEPAAEMGVPR 275 G MGV R Sbjct: 262 G--------MGVKR 267 >B1D9L9.1 B1D9L9_9BACL Binding-protein-dependent transport systems inner membrane component Length = 267 Score = 327 bits (839), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 162/241 (67%), Positives = 185/241 (76%) Query: 22 PILYLMYYSFNSGGTMHKFESFTLDYYREVLGDTRLMIIVINXXXXXXXXXXXXXXXXXX 81 PI YL++YSFNSGG M FE FTL++Y+EV DTRL+IIV+N Sbjct: 21 PIFYLIFYSFNSGGAMRNFEGFTLEWYQEVFADTRLLIIVLNTFVIALLSSAISVIFGIA 80 Query: 82 XXXXXQRVRSRRAKNTLLSLNNVLIVSPDVIIGASFLILFTIVGIKLGFTSVLLSHVAFS 141 VR R+ KN LLSLNNVLIVSPDVIIGASFLI+FTI+GIKLGF SVLLSH+AFS Sbjct: 81 GALAIHYVRRRQPKNALLSLNNVLIVSPDVIIGASFLIMFTIIGIKLGFVSVLLSHIAFS 140 Query: 142 VPIAVLMILPHLQEMSPTLTDAARDLGASRRDVLTKVVLPIIKPGIFSGFFMALTYSLDD 201 VPI V+M+LP LQEMSPTL DAARDLGAS VLT+V++P IKPGIF+GFFMALTYSLDD Sbjct: 141 VPIVVIMVLPKLQEMSPTLIDAARDLGASSWHVLTRVIVPFIKPGIFAGFFMALTYSLDD 200 Query: 202 FAVTFFVTGNGYSTLSVEIYSRARQGVSLSINALSXXXXXXXXXXVIGYYFLNRRKNRPA 261 FAVTFFVTGNG+STLSVEIYSRARQG++LSINALS VIGYYF+N+R NR + Sbjct: 201 FAVTFFVTGNGFSTLSVEIYSRARQGIALSINALSTLIFLFTILLVIGYYFINQRNNRTS 260 Query: 262 G 262 Sbjct: 261 A 261 >Q2BAW5.1 Q2BAW5_9BACI Spermidine/putrescine ABC transporter, permease protein Length = 267 Score = 320 bits (819), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 160/241 (66%), Positives = 185/241 (76%) Query: 22 PILYLMYYSFNSGGTMHKFESFTLDYYREVLGDTRLMIIVINXXXXXXXXXXXXXXXXXX 81 PI YLM+YSFNSGGTM FE FTLD+Y+E+ D RL+IIV+N Sbjct: 22 PIFYLMFYSFNSGGTMSHFEGFTLDWYKELFADARLLIIVLNTIIIALLSAAISTIIGVA 81 Query: 82 XXXXXQRVRSRRAKNTLLSLNNVLIVSPDVIIGASFLILFTIVGIKLGFTSVLLSHVAFS 141 VR R+ K+TLLSLNN+LIVSPDVIIGASFLILFT++GIKLGFTSVLLSH+AF Sbjct: 82 GALAIFYVRKRQVKSTLLSLNNILIVSPDVIIGASFLILFTMIGIKLGFTSVLLSHIAFC 141 Query: 142 VPIAVLMILPHLQEMSPTLTDAARDLGASRRDVLTKVVLPIIKPGIFSGFFMALTYSLDD 201 VPI V+M+LP +QEMSPTL DAARDLGASR DVL+KVVLP I PGIF+GFFMALTYSLDD Sbjct: 142 VPIVVIMVLPKIQEMSPTLVDAARDLGASRFDVLSKVVLPYITPGIFAGFFMALTYSLDD 201 Query: 202 FAVTFFVTGNGYSTLSVEIYSRARQGVSLSINALSXXXXXXXXXXVIGYYFLNRRKNRPA 261 FAVTFFVTGNG++TLSVEIYS AR+GVSL+INALS VIGYYF+ ++ +P Sbjct: 202 FAVTFFVTGNGFTTLSVEIYSLARRGVSLNINALSTLLFLFTLILVIGYYFITQKNAKPT 261 Query: 262 G 262 G Sbjct: 262 G 262 >Q5L220.1 Q5L220_GEOKA Spermidine/putrescine ABC transporter (Permease) Length = 267 Score = 317 bits (812), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 160/241 (66%), Positives = 182/241 (75%) Query: 22 PILYLMYYSFNSGGTMHKFESFTLDYYREVLGDTRLMIIVINXXXXXXXXXXXXXXXXXX 81 PI+YLMYYSFNSGG MH F+SFTL +YR+VL D RL+IIV+N Sbjct: 22 PIVYLMYYSFNSGGAMHDFQSFTLKWYRDVLSDDRLLIIVLNTIVVALLSAAVATILGVI 81 Query: 82 XXXXXQRVRSRRAKNTLLSLNNVLIVSPDVIIGASFLILFTIVGIKLGFTSVLLSHVAFS 141 V+ +R KN LL+LNNVLIVSPDVIIGASFL+LFTI GIKLGFTSVLLSH+AFS Sbjct: 82 GALAVYYVKRQRTKNALLALNNVLIVSPDVIIGASFLLLFTIAGIKLGFTSVLLSHIAFS 141 Query: 142 VPIAVLMILPHLQEMSPTLTDAARDLGASRRDVLTKVVLPIIKPGIFSGFFMALTYSLDD 201 VPI VLM+LP L+EMSPTL DAARDLGAS VL+ VVLP + P I++GFFMALTYSLDD Sbjct: 142 VPIVVLMVLPKLEEMSPTLIDAARDLGASHWQVLSGVVLPFLAPSIWAGFFMALTYSLDD 201 Query: 202 FAVTFFVTGNGYSTLSVEIYSRARQGVSLSINALSXXXXXXXXXXVIGYYFLNRRKNRPA 261 FAVTFFVTGNG+STLSVEIYSRARQG+SLSINALS VIGYY L+++ R Sbjct: 202 FAVTFFVTGNGFSTLSVEIYSRARQGISLSINALSTLLFLFTMLLVIGYYVLSQKGGRLY 261 Query: 262 G 262 G Sbjct: 262 G 262 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.141 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,250,600,917 Number of extensions: 41545094 Number of successful extensions: 173794 Number of sequences better than 1.0e-05: 2821 Number of HSP's gapped: 173242 Number of HSP's successfully gapped: 2831 Length of query: 275 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 141 Effective length of database: 1,798,280,193 Effective search space: 253557507213 Effective search space used: 253557507213 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)