BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0407.0003.p (223 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DE83.1 B1DE83_9BACL Putative uncharacterized protein 211 3e-53 B1D9L5.1 B1D9L5_9BACL Putative uncharacterized protein 197 6e-49 Q2BET6.1 Q2BET6_9BACI Putative uncharacterized protein 155 3e-36 B1DFE1.1 B1DFE1_9BACL Putative uncharacterized protein 130 1e-28 B1DEB9.1 B1DEB9_9BACL Putative uncharacterized protein 129 1e-28 >B1DE83.1 B1DE83_9BACL Putative uncharacterized protein Length = 223 Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 111/222 (50%), Positives = 145/222 (65%), Gaps = 10/222 (4%) Query: 3 FEEAHLQFLNGHLADRPAGERRGRLERGHQHAETLFLRNVWWPLRGHFTGLHPEYEVTDW 62 FEEAH QFL HL R GER+GRL RGH AE L L+NVWWPL G F LHPEYEV DW Sbjct: 4 FEEAHQQFLTKHLELR-GGERKGRLVRGHNFAEKLILQNVWWPLFGSFEHLHPEYEVYDW 62 Query: 63 RGRSYFADFAWLPGYVKLLIEIKGYASHVRDMDRQKYCNELNRETFLYAMGYHVISFAYD 122 +S F DFA+LP Y K IE G+ SHV+DMDR+K+ LNR+TFL MG+ +I F++D Sbjct: 63 NRKSQFLDFAFLPPYGKFGIECDGFQSHVKDMDREKFSYSLNRDTFLKGMGWTMIHFSFD 122 Query: 123 DVEQRPELCMTLLRMVLG----RFQPSDAPVSRVLLMEQEIIRLAVQLARPIRPQDVKEH 178 DV+ RPE+C LL+ ++ PS PV L+E+EI+R A QL+RPIRP+D+ ++ Sbjct: 123 DVQNRPEICRMLLQGIINPRLIHSAPSPDPVQ---LLEKEILRYAFQLSRPIRPKDIIDY 179 Query: 179 FNITYKTAIRILRSLTEKGWLLPSADTKEQRIVRYELARGVL 220 + ++TA L++L+ KG L P + R RYE+ L Sbjct: 180 LQVDFRTARNKLQTLSNKGLLKPIISGTQIR--RYEITERAL 219 >B1D9L5.1 B1D9L5_9BACL Putative uncharacterized protein Length = 227 Score = 197 bits (501), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 98/202 (48%), Positives = 134/202 (66%), Gaps = 4/202 (1%) Query: 3 FEEAHLQFLNGHLADRPAGERRGRLERGHQHAETLFLRNVWWPLRGHFTGLHPEYEVTDW 62 +EEAH +F+ H+ R GERRGRL RGH AE LFL+NVWWPL G+F LHPEYEV DW Sbjct: 7 YEEAHRRFIETHMEGR-TGERRGRLARGHNFAEKLFLQNVWWPLLGNFEHLHPEYEVYDW 65 Query: 63 RGRSYFADFAWLPGYVKLLIEIKGYASHVRDMDRQKYCNELNRETFLYAMGYHVISFAYD 122 +S F DFA+LP IE G+ SHV+DMDR+++ LNR+TFL MG+ +I F++D Sbjct: 66 NRKSQFVDFAYLPPQGMFAIECDGFQSHVKDMDRERFSYSLNRDTFLTGMGWKMIHFSFD 125 Query: 123 DVEQRPELCMTLLRMVLGRFQPSDAPVSRVLLM---EQEIIRLAVQLARPIRPQDVKEHF 179 DV+ PE+CM LL+ VLG LL+ E++I+R A + + P+D+ +HF Sbjct: 126 DVQNHPEICMMLLKHVLGTHIIRGRQNVASLLVPSAERDILRFAFHMGGRVGPKDLSDHF 185 Query: 180 NITYKTAIRILRSLTEKGWLLP 201 I+++TA + L+SL+ KG L P Sbjct: 186 GISFRTARKRLQSLSAKGMLKP 207 >Q2BET6.1 Q2BET6_9BACI Putative uncharacterized protein Length = 243 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 76/217 (35%), Positives = 131/217 (60%), Gaps = 3/217 (1%) Query: 3 FEEAHLQFLNGHLADRPAGERRGRLERGHQHAETLFLRNVWWPLRGHFTGLHPEYEVTDW 62 FEE + FL+ HL R GER RLE GH+HAE LFL+ VWWP+ F LHPEYE+ ++ Sbjct: 26 FEEEYQAFLHSHLQAR-TGERLRRLEEGHKHAEMLFLKQVWWPVFYQFNYLHPEYEIDNY 84 Query: 63 RGRSYFADFAWLPGYVKLLIEIKGYASHVRDMDRQKYCNELNRETFLYAMGYHVISFAYD 122 + DFA++ +K+ +E+ GY H++++ R ++ + L R+ L + VI F++D Sbjct: 85 NDGKRYLDFAYIRPGIKVCLEVDGYGPHLKNISRWQFSDSLERQNQLVIDRWTVIRFSFD 144 Query: 123 DVEQRPELCMTLLRMVLGRFQPSDAPVSRVLLMEQEIIRLAVQLARPIRPQDVKEHFNIT 182 V++ P C +++ V+GR+ + + + +E+E++RL ++ I P++V+++ ++ Sbjct: 145 QVKENPRRCQQVVQQVIGRWMGDELDQTSLSFLEKEVLRLVIRKGEDISPKEVEKYLKLS 204 Query: 183 YKTAIRILRSLTEKGWLLPSADTKEQRIVRYELARGV 219 KT ++L L EK L+P++ T QRI Y + V Sbjct: 205 AKTVKKVLSQLVEKKMLIPASGT--QRIRSYRVGYQV 239 >B1DFE1.1 B1DFE1_9BACL Putative uncharacterized protein Length = 225 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 127/228 (55%), Gaps = 15/228 (6%) Query: 1 LIFEEAHLQFLNGHLADRPAGERRGRLERGHQHAETLFLRNVWWPLRGHFTGLHPEYEVT 60 + FE H ++ HL + G+ + RL +GH HAE LFL+NVW+ +F LHPEY+V Sbjct: 1 MSFESVHQKWYEMHLK-KLNGKDKERLMQGHAHAERLFLKNVWFTAFRNFENLHPEYKVA 59 Query: 61 DWRGRSYFADFAWLPGYVKLLIEIKGYASHVRDMDRQKYCNELNRETFLYAMGYHVISFA 120 D+R + + DFA+L +KL IEI G+ H+ R + ++ R+ L G+ ++ F+ Sbjct: 60 DFRDGARYLDFAYLKYPLKLSIEIDGFGPHLSQASRNHFSDDRIRQNHLVIDGWRILRFS 119 Query: 121 YDDVEQRPELCMTLLRMVLGRF-------QPSDAPVSRVLLMEQEIIRLAVQLARPIRPQ 173 YDD+ RP +C +++ + + + SDA +++ E++RLA++ +P+R + Sbjct: 120 YDDICDRPRMCEQIVQQFMSTWLDRHYTERSSDA------IIQHEVLRLALRTEKPLRAR 173 Query: 174 DVKEHFNITYKTAIRILRSLTEKGWLLPSADTKEQRIVRYELARGVLE 221 +V + + +TA ILR L + LLP K QR+ Y + + L+ Sbjct: 174 EVSTYLTVHIETARSILRELAKLNLLLPCGGGK-QRVHSYVVNKENLD 220 >B1DEB9.1 B1DEB9_9BACL Putative uncharacterized protein Length = 231 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/197 (40%), Positives = 107/197 (54%), Gaps = 2/197 (1%) Query: 20 AGERRGRLERGHQHAETLFLRNVWWPLRGHFTGLHPEYEVTDWRGRSYFADFAWLPGYVK 79 G R R +HAE LFL+ VWWP G LH EYEV D++ F D+A+L K Sbjct: 31 GGSERKRRISEERHAEDLFLKQVWWPAIGQLDHLHAEYEVDDYKDGQRFLDYAYLREPYK 90 Query: 80 LLIEIKGYASHVRDMDRQKYCNELNRETFLYAMGYHVISFAYDDVEQRPELCMTLLRMVL 139 + IEI GY H RD DR+++ + L R+ L G+ VI F+YDDV+ +P C L+ + Sbjct: 91 ICIEIDGYGPHFRDADRRQFADNLMRQNHLILDGWMVIRFSYDDVKSKPRQCQQFLQQLF 150 Query: 140 GRFQPSDAPVSRVLLMEQEIIRLAVQLARPIRPQDVKEHFNITYKTAIRILRSLTEKGWL 199 G+ S AP + L ++EI+R +PI P++VKE + K A LR L EK L Sbjct: 151 GKL-FSLAPDRNLSLQQKEILRYMSITQKPISPKEVKELLQVGNKAARMRLRELVEKK-L 208 Query: 200 LPSADTKEQRIVRYELA 216 L SA T R+ Y L Sbjct: 209 LVSASTGSSRVRFYSLT 225 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.141 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,368,981,068 Number of extensions: 55014611 Number of successful extensions: 135458 Number of sequences better than 1.0e-05: 9 Number of HSP's gapped: 135449 Number of HSP's successfully gapped: 9 Length of query: 223 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 92 Effective length of database: 1,826,543,238 Effective search space: 168041977896 Effective search space used: 168041977896 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)