BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0407.0002.p (274 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K810.1 B3K810_9BACI Methyltransferase type 11 301 3e-80 B7DP36.1 B7DP36_9BACL Methyltransferase type 11 246 2e-63 C1PS49.1 C1PS49_ALIAC Methylase involved in ubiquinone/menaquino... 244 6e-63 C3XAC5.1 C3XAC5_OXAFO Methyltransferase type 11 229 2e-58 A9AWK7.1 A9AWK7_HERA2 Methyltransferase type 11 172 2e-41 >B3K810.1 B3K810_9BACI Methyltransferase type 11 Length = 293 Score = 301 bits (772), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 150/280 (53%), Positives = 184/280 (65%), Gaps = 7/280 (2%) Query: 2 IPAGNSKPNIERFLGFQDEYDRYRPEAPPIVVELLTQYLGRRPSLVADVGCGTGLSTFLW 61 +P GN N++RF GF+D YD++RPEAP VV LLT YL R+PS+V D+GCGTGLS+F W Sbjct: 14 VPEGNRASNVDRFTGFEDTYDQHRPEAPQEVVALLTGYLERKPSVVVDLGCGTGLSSFAW 73 Query: 62 KDAADTVTGVEPNPDMXXXXXXXXXXXXXXXXXX-------XFIQGFSNQLPFSPDSVDI 114 KDAAD V GVEPN DM F+ G+SNQL S DI Sbjct: 74 KDAADQVIGVEPNDDMRGKAVAKLQTLEQEARSSGADIADIKFVSGYSNQLALKDQSADI 133 Query: 115 ITCSQSFHWMDPDSTLQEVSRCLRPGGIFAAYDCDWPLVLQPDIEARYNHLIAASDAWLA 174 ITCSQSFHWMDP STL+EVSR LR GIFA YDCDWP L +E Y+ LI ++A + Sbjct: 134 ITCSQSFHWMDPASTLKEVSRVLRDEGIFAVYDCDWPPSLTWRVEQAYHGLIERAEAIID 193 Query: 175 ELQPAAEQARKWDKEGHLSRMKASGVFTYAREIVFHNTENCDAQRYVGLMLSQGGIQTVL 234 + EQA K +K HL ++ SG+F +++EIVFH+ E A RY GL +SQGGIQTV Sbjct: 194 DHVEPQEQAYKGNKNEHLKHIRESGLFRFSKEIVFHHMEPFTADRYTGLAVSQGGIQTVF 253 Query: 235 KLDPAVLTQDIAGFTADVEQFFQGRTLPVLISYRMRVGVK 274 KL P L +IA F A VE+ FQGRTLPV++SYRMR+G+K Sbjct: 254 KLKPNELNDNIAQFHALVEEHFQGRTLPVMLSYRMRLGIK 293 >B7DP36.1 B7DP36_9BACL Methyltransferase type 11 Length = 275 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 125/267 (46%), Positives = 161/267 (60%), Gaps = 2/267 (0%) Query: 8 KPNIERFLGFQDEYDRYRPEAPPIVVELLTQYLGRRPSLVADVGCGTGLSTFLWKDAADT 67 + NIERF GF YD YRPEAP V ELL YLG +P V D+G GTGLSTF W+ A Sbjct: 6 RNNIERFSGFAKLYDTYRPEAPETVRELLIAYLGHKPDTVIDLGSGTGLSTFPWRHEARR 65 Query: 68 VTGVEPNPDMXXXXXXXXXXXXXXXXXXXFIQGFSNQLPFSPDSVDIITCSQSFHWMDPD 127 V GVEPN DM F+QG S +P S S D++TCSQSFHWMDP Sbjct: 66 VIGVEPNDDMRAQAERRAMDLGADNVT--FLQGVSTAIPCSDASADLVTCSQSFHWMDPQ 123 Query: 128 STLQEVSRCLRPGGIFAAYDCDWPLVLQPDIEARYNHLIAASDAWLAELQPAAEQARKWD 187 TL+EV+R LRPGG+FAAYDCDWP + + Y L+ ++A + P +QARKW Sbjct: 124 PTLREVARVLRPGGVFAAYDCDWPPSCCLETDVAYEKLLQCAEASIRRHVPERDQARKWP 183 Query: 188 KEGHLSRMKASGVFTYAREIVFHNTENCDAQRYVGLMLSQGGIQTVLKLDPAVLTQDIAG 247 KE HL +++ASG+F++A+E+VFH A +VG+ LSQG +Q+ L+ + ++I Sbjct: 184 KEQHLDQIRASGLFSFAKEVVFHVETRLGADAFVGIALSQGQVQSALRRRLPDIEEEILT 243 Query: 248 FTADVEQFFQGRTLPVLISYRMRVGVK 274 F V F PV SYR+R+GVK Sbjct: 244 FETRVRAAFGDGEKPVWFSYRLRLGVK 270 >C1PS49.1 C1PS49_ALIAC Methylase involved in ubiquinone/menaquinone biosynthesis Length = 276 Score = 244 bits (623), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 124/267 (46%), Positives = 161/267 (60%), Gaps = 2/267 (0%) Query: 8 KPNIERFLGFQDEYDRYRPEAPPIVVELLTQYLGRRPSLVADVGCGTGLSTFLWKDAADT 67 + NIERF GF YD YRPEAP V ELL YLG++P V D+G GTGLSTF W+ A Sbjct: 6 RNNIERFSGFAKLYDTYRPEAPETVRELLIAYLGKKPDTVVDLGSGTGLSTFPWRHDARR 65 Query: 68 VTGVEPNPDMXXXXXXXXXXXXXXXXXXXFIQGFSNQLPFSPDSVDIITCSQSFHWMDPD 127 V GVEPN DM F+ G S +P S S D++TCSQSFHWMDP Sbjct: 66 VIGVEPNDDMRAQAERRAMDLGADNVT--FLPGVSTAIPCSDASADLVTCSQSFHWMDPQ 123 Query: 128 STLQEVSRCLRPGGIFAAYDCDWPLVLQPDIEARYNHLIAASDAWLAELQPAAEQARKWD 187 TL+EV+R L PGG+FAAYDCDWP + + Y L+ ++A + P EQARKW Sbjct: 124 PTLREVARVLGPGGVFAAYDCDWPPSCCLETDVAYEKLLQCAEASIRRHVPEREQARKWP 183 Query: 188 KEGHLSRMKASGVFTYAREIVFHNTENCDAQRYVGLMLSQGGIQTVLKLDPAVLTQDIAG 247 KE HL +++ASG+F++A+E+VFH A +VG+ LSQG +Q+ L+ + Q+I+ Sbjct: 184 KEHHLDQIRASGLFSFAKEVVFHVETRLGADAFVGIALSQGQVQSALRRRLPDIEQEISA 243 Query: 248 FTADVEQFFQGRTLPVLISYRMRVGVK 274 F V F P+ SYR+R+GVK Sbjct: 244 FETRVRAAFGDGDRPIWFSYRLRLGVK 270 >C3XAC5.1 C3XAC5_OXAFO Methyltransferase type 11 Length = 266 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 116/269 (43%), Positives = 154/269 (57%), Gaps = 14/269 (5%) Query: 10 NIERFLGFQDEYDRYRPEAPPIVVELLTQYLGRRPSLVADVGCGTGLSTFLWKDAADTVT 69 N RF GF D YD+ RP P V+++ YLGR+P V D+GCGTGLS+ +WK + +T Sbjct: 8 NAGRFTGFADVYDQARPAMPFYPVKIIRTYLGRKPQQVVDLGCGTGLSSLVWKGQCEKLT 67 Query: 70 GVEPNPDMXXXXXXXXXXXXXXXXXXXFIQGFSNQLPFSPDSVDIITCSQSFHWMDPDST 129 G+EP+ DM F +GFS SVD + CSQSFHWM+P+ST Sbjct: 68 GIEPSDDMLAVAKLKETEGIS------FKKGFSGATGLENASVDAVVCSQSFHWMEPEST 121 Query: 130 LQEVSRCLRPGGIFAAYDCDWPLVLQPDIEARYNHLIAASDAWLAELQPAAEQAR----K 185 L EV+R L+PGG+FA DCDWP V E Y L + E++ + + Sbjct: 122 LAEVNRILKPGGVFATVDCDWPPVCHWQAEKAYTELFRK----VLEIEETNLDVKNSFVR 177 Query: 186 WDKEGHLSRMKASGVFTYAREIVFHNTENCDAQRYVGLMLSQGGIQTVLKLDPAVLTQDI 245 W+KEGHL+ ++ SGVFTYAREIVF NTE C ++R L SQGG+QT+LK P ++ +D+ Sbjct: 178 WNKEGHLANIRRSGVFTYAREIVFSNTEKCTSERLAELAKSQGGLQTILKKAPEMIEKDL 237 Query: 246 AGFTADVEQFFQGRTLPVLISYRMRVGVK 274 F V F + YRMR+GVK Sbjct: 238 VVFEKAVSATFGQDEFDIDFGYRMRIGVK 266 >A9AWK7.1 A9AWK7_HERA2 Methyltransferase type 11 Length = 267 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 96/272 (35%), Positives = 145/272 (53%), Gaps = 23/272 (8%) Query: 14 FLGFQDEYDRYRPEAPPIVVELLTQYLGRR-PSLVADVGCGTGLSTFLWKDAADTVTGVE 72 ++G YD+ RP P +++++LTQ + P LV D+GCGTG ST +W + A V G+E Sbjct: 8 WVGEAKRYDQTRPTPPLVLIDILTQLIHIPCPELVVDLGCGTGRSTTIWNERAAQVIGIE 67 Query: 73 PNPDMXXXXXXXXXXXXXXXXXXXFIQGFSNQLPFSPDSVDIITCSQSFHWMDPDSTLQE 132 P+ M + G ++Q F +SVDI+TC+Q+FHWM+P +TL E Sbjct: 68 PSEPMRSVAIQNLATLTSSTTIS-YQDGVAHQTGFESNSVDIVTCAQAFHWMEPTATLAE 126 Query: 133 VSRCLRPGGIFAAYDCDWPLVLQ-------PDIEARYNHLIAASDAWLAELQPAAEQARK 185 ++R LRPGG+FAAYD WP + +++ R+ HLIA PA Sbjct: 127 IARILRPGGVFAAYDYSWPPTIHWEIDQIFQEVDRRFEHLIATRGT------PAERPG-- 178 Query: 186 WDKEGHLSRMKASGVFTYAREIVFHNTENCDAQRYVGLMLSQGGIQTVLKLDPAVLTQDI 245 W KE HL RM+ S VF + +E+V H+ E DA R++GL+LS G +L +T+ Sbjct: 179 WAKEQHLERMQQSRVFQHTQELVLHHCEYGDANRFIGLILSSGYSH---QLKHGTVTEQE 235 Query: 246 AGF---TADVEQFFQGRTLPVLISYRMRVGVK 274 GF + + +P SY +R+G++ Sbjct: 236 IGFDRLRQVAHELIGKQPIPWYFSYHVRIGIR 267 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,612,267,439 Number of extensions: 60948957 Number of successful extensions: 139667 Number of sequences better than 1.0e-05: 187 Number of HSP's gapped: 140138 Number of HSP's successfully gapped: 187 Length of query: 274 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 140 Effective length of database: 1,798,280,193 Effective search space: 251759227020 Effective search space used: 251759227020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)