BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0407.0001.p (283 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z5X4.1 C0Z5X4_BREBN Putative menaquinone biosynthesis protein 412 e-113 A4J9I3.1 A4J9I3_DESRM Putative uncharacterized protein 407 e-112 B3K9S2.1 B3K9S2_9BACI Putative uncharacterized protein 404 e-111 B1I1A2.1 B1I1A2_DESAP Putative uncharacterized protein 400 e-110 B1D9G5.1 B1D9G5_9BACL Putative uncharacterized protein 393 e-107 >C0Z5X4.1 C0Z5X4_BREBN Putative menaquinone biosynthesis protein Length = 281 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 197/280 (70%), Positives = 229/280 (81%), Gaps = 1/280 (0%) Query: 5 LNIAFSPCPNDTFVFHAWAHGLVPGAPKLNVTFADIDITNGLAADGAGPEVLKISYAALP 64 + IAFSPCPNDTFVFHAWAH L+PGAPKL++ +ADIDITN LAA G GPEV+KISYAALP Sbjct: 1 MKIAFSPCPNDTFVFHAWAHDLIPGAPKLDIMYADIDITNTLAAQGEGPEVMKISYAALP 60 Query: 65 WVLEQYKLLPCGGALGRGCGPLVLTRKGAG-AIKHPRGLSGRRIAVPSERSTAYLLFRLW 123 WV++ Y LLPCGGALGRGCGPLVLT+ +G + P LS +R+AVPSERSTAYLLFRLW Sbjct: 61 WVMDNYSLLPCGGALGRGCGPLVLTQGNSGESANDPGRLSNKRVAVPSERSTAYLLFRLW 120 Query: 124 AAQQVPGGPAEIVIMPFDEIMPAVRDGQIDAGLVIHEARFTYPSYGLDLLTDLGSWWESD 183 AAQ VPGG EIV+MPF EIMPAVRDG+IDAGLVIHEARFTY +YGL L+TDLG+WWESD Sbjct: 121 AAQNVPGGVGEIVVMPFHEIMPAVRDGKIDAGLVIHEARFTYQNYGLSLMTDLGNWWESD 180 Query: 184 TGLPIPLGAIIARRDLDHEAIIGWIRSSLQYAWDHQTDSRDYVLDHAQELSPEVAKSHID 243 T LPIPLGAIIA++ +D EA+ W RSS++YAW + T S++YV+ HAQELS EVA++HI+ Sbjct: 181 TSLPIPLGAIIAKKSMDIEALTNWTRSSVEYAWANPTASQEYVMSHAQELSLEVAQAHIN 240 Query: 244 LYVNEFTMNLGDDGYXXXXXXXXXXXXEGLVPAVDPVLLR 283 LYVNEFT NLG+DGY EGLVPA D LR Sbjct: 241 LYVNEFTRNLGNDGYAAVEALLGRAAEEGLVPAFDLSTLR 280 >A4J9I3.1 A4J9I3_DESRM Putative uncharacterized protein Length = 282 Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust. Identities = 191/274 (69%), Positives = 223/274 (81%) Query: 5 LNIAFSPCPNDTFVFHAWAHGLVPGAPKLNVTFADIDITNGLAADGAGPEVLKISYAALP 64 + IAFSPCPNDTF+FHAW HGL+PGAPKL+VT+ADIDITN LAA GPEV+KISYAALP Sbjct: 1 MKIAFSPCPNDTFIFHAWVHGLIPGAPKLDVTYADIDITNSLAASSNGPEVIKISYAALP 60 Query: 65 WVLEQYKLLPCGGALGRGCGPLVLTRKGAGAIKHPRGLSGRRIAVPSERSTAYLLFRLWA 124 WVL +Y LLPCGGALG+GCGPL+LT G+IK P ++G+R+AVPSERSTAYLLFRLW Sbjct: 61 WVLSEYALLPCGGALGKGCGPLLLTSNKVGSIKDPTLIAGKRVAVPSERSTAYLLFRLWI 120 Query: 125 AQQVPGGPAEIVIMPFDEIMPAVRDGQIDAGLVIHEARFTYPSYGLDLLTDLGSWWESDT 184 AQ VPGG EIV++PF +IMPAVRDG +DAGLVIHEARFTYPS+GL LL DLG+WWE+DT Sbjct: 121 AQHVPGGVGEIVVLPFHQIMPAVRDGLVDAGLVIHEARFTYPSFGLTLLVDLGNWWEADT 180 Query: 185 GLPIPLGAIIARRDLDHEAIIGWIRSSLQYAWDHQTDSRDYVLDHAQELSPEVAKSHIDL 244 LPIPLGAIIARR D AI GWIR+S+++AW S+ YVL+HAQELSPEVA++HI L Sbjct: 181 NLPIPLGAIIARRSQDLSAIAGWIRASVKHAWTQPEVSQQYVLEHAQELSPEVAQAHIKL 240 Query: 245 YVNEFTMNLGDDGYXXXXXXXXXXXXEGLVPAVD 278 YVNEFT ++G+ GY EGLVP VD Sbjct: 241 YVNEFTEHIGEMGYQAVEALLSRAAQEGLVPKVD 274 >B3K9S2.1 B3K9S2_9BACI Putative uncharacterized protein Length = 285 Score = 404 bits (1038), Expect = e-111, Method: Compositional matrix adjust. Identities = 199/282 (70%), Positives = 225/282 (79%), Gaps = 3/282 (1%) Query: 5 LNIAFSPCPNDTFVFHAWAHGLVPGAPKLNVTFADIDITNGLAADGAGPEVLKISYAALP 64 + IAFSPCPNDTFVFHAW HGL+PGAP+L+V++ADIDITN AA ++LKISYAALP Sbjct: 1 MKIAFSPCPNDTFVFHAWVHGLIPGAPELDVSYADIDITNHWAAADREHDILKISYAALP 60 Query: 65 WVLEQYKLLPCGGALGRGCGPLVLTRKGAGAIK---HPRGLSGRRIAVPSERSTAYLLFR 121 WVL++Y LLPCGGALGRGCGPLVLT K P LSGRR+AVPSERSTAYLLFR Sbjct: 61 WVLDEYALLPCGGALGRGCGPLVLTADKLTDGKTPDSPAALSGRRVAVPSERSTAYLLFR 120 Query: 122 LWAAQQVPGGPAEIVIMPFDEIMPAVRDGQIDAGLVIHEARFTYPSYGLDLLTDLGSWWE 181 LWAAQ VPGG EIV+MPFD+IMPAVRDG IDAGLVIHEARFTY SYGL L+TDLGSWWE Sbjct: 121 LWAAQNVPGGLGEIVVMPFDQIMPAVRDGAIDAGLVIHEARFTYTSYGLKLMTDLGSWWE 180 Query: 182 SDTGLPIPLGAIIARRDLDHEAIIGWIRSSLQYAWDHQTDSRDYVLDHAQELSPEVAKSH 241 SDT LPIPLGAI+ARR LD +I WIRSS++YAW+H +SRDYVL HAQE+ P+VA +H Sbjct: 181 SDTNLPIPLGAIVARRSLDLASISSWIRSSVEYAWEHPGESRDYVLRHAQEMDPDVADAH 240 Query: 242 IDLYVNEFTMNLGDDGYXXXXXXXXXXXXEGLVPAVDPVLLR 283 IDLYVN FT LG+DGY EGLVP +DP LL+ Sbjct: 241 IDLYVNPFTAELGEDGYAAISALLNRAADEGLVPRIDPALLK 282 >B1I1A2.1 B1I1A2_DESAP Putative uncharacterized protein Length = 282 Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust. Identities = 191/279 (68%), Positives = 219/279 (78%) Query: 5 LNIAFSPCPNDTFVFHAWAHGLVPGAPKLNVTFADIDITNGLAADGAGPEVLKISYAALP 64 + I FSPCPNDTF+FHAW HGL+PGAPKL+VT+ADIDITN LAA GPEVLKISYAALP Sbjct: 1 MKIVFSPCPNDTFIFHAWVHGLIPGAPKLDVTYADIDITNSLAAGVNGPEVLKISYAALP 60 Query: 65 WVLEQYKLLPCGGALGRGCGPLVLTRKGAGAIKHPRGLSGRRIAVPSERSTAYLLFRLWA 124 WVL +Y LLPCGGALGRGCGPLVLT G P L+GRR+AVP ERSTAYLLF+LW Sbjct: 61 WVLSEYALLPCGGALGRGCGPLVLTPDRTGGANGPAALAGRRVAVPGERSTAYLLFQLWT 120 Query: 125 AQQVPGGPAEIVIMPFDEIMPAVRDGQIDAGLVIHEARFTYPSYGLDLLTDLGSWWESDT 184 A+ VP EIV++PF+EIMPAVRDG +DAGLVIHEARFTYPSYGL LL DLG WWE++T Sbjct: 121 ARHVPESVGEIVVLPFNEIMPAVRDGLVDAGLVIHEARFTYPSYGLTLLADLGRWWEAET 180 Query: 185 GLPIPLGAIIARRDLDHEAIIGWIRSSLQYAWDHQTDSRDYVLDHAQELSPEVAKSHIDL 244 GLP+PLGAIIARR LD A+ WI++SL YAW H SR+YVL AQEL+PEV ++HI L Sbjct: 181 GLPLPLGAIIARRSLDLPAVASWIQASLAYAWAHPEASREYVLSRAQELAPEVVEAHIKL 240 Query: 245 YVNEFTMNLGDDGYXXXXXXXXXXXXEGLVPAVDPVLLR 283 YVNE+TM+LG+ GY EGLVP V+P LR Sbjct: 241 YVNEYTMDLGETGYEAVATLLSRAAREGLVPEVNPAALR 279 >B1D9G5.1 B1D9G5_9BACL Putative uncharacterized protein Length = 280 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 193/280 (68%), Positives = 219/280 (78%), Gaps = 4/280 (1%) Query: 5 LNIAFSPCPNDTFVFHAWAHGLVPGAPKLNVTFADIDITNGLAADG-AGPEVLKISYAAL 63 + IAFSPCPNDTFVFHA HGLVPGAP+ +V +ADIDITN LAA G + +VLKISYAAL Sbjct: 1 MKIAFSPCPNDTFVFHALTHGLVPGAPEFDVMYADIDITNNLAASGDSDLDVLKISYAAL 60 Query: 64 PWVLEQYKLLPCGGALGRGCGPLVLTRKGAGAIKHPRGLSGRRIAVPSERSTAYLLFRLW 123 PWVL+ Y LLPCGGALGRGCGPLVLT+ ++ LSG+R+AVPSERSTAYLLFRLW Sbjct: 61 PWVLKDYALLPCGGALGRGCGPLVLTKD---KLEDASYLSGKRVAVPSERSTAYLLFRLW 117 Query: 124 AAQQVPGGPAEIVIMPFDEIMPAVRDGQIDAGLVIHEARFTYPSYGLDLLTDLGSWWESD 183 AAQ VPGG EI++MPF EIMPAVRDG+IDAGLVIHEARFTY +YGL +L DLGSWWESD Sbjct: 118 AAQNVPGGVGEIIVMPFHEIMPAVRDGKIDAGLVIHEARFTYQNYGLSMLVDLGSWWESD 177 Query: 184 TGLPIPLGAIIARRDLDHEAIIGWIRSSLQYAWDHQTDSRDYVLDHAQELSPEVAKSHID 243 TGLPIPLGAIIARR LD A+ WI S++YAW H S+DYV+ HAQE+ P VA+ HI Sbjct: 178 TGLPIPLGAIIARRSLDLGALSSWIEQSVEYAWKHPEASKDYVMQHAQEMDPSVAQQHIS 237 Query: 244 LYVNEFTMNLGDDGYXXXXXXXXXXXXEGLVPAVDPVLLR 283 LYVN+FT NLG GY EGLVPA+DP LL Sbjct: 238 LYVNDFTGNLGSSGYAAISTLLNRAADEGLVPAIDPALLE 277 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.140 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,836,308,176 Number of extensions: 83864022 Number of successful extensions: 147438 Number of sequences better than 1.0e-05: 166 Number of HSP's gapped: 146947 Number of HSP's successfully gapped: 166 Length of query: 283 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 149 Effective length of database: 1,798,280,193 Effective search space: 267943748757 Effective search space used: 267943748757 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)