BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0405.0011.p (174 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8FRD9.1 B8FRD9_DESHD Transcriptional regulator, MarR family 77 4e-13 Q24Z25.1 Q24Z25_DESHY Putative uncharacterized protein 75 2e-12 Q97E33.1 Q97E33_CLOAB Transcriptional regulator, MarR/EmrR family 68 3e-10 A7VQ95.1 A7VQ95_9CLOT Putative uncharacterized protein 67 6e-10 Q8Y9C6.1 Q8Y9C6_LISMO Lmo0606 protein 66 1e-09 >B8FRD9.1 B8FRD9_DESHD Transcriptional regulator, MarR family Length = 152 Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 10/150 (6%) Query: 4 QDSQERKLLIALENIKRLTTRTQLFASIPRAEFLXXXXFVINASMQKAEQEKETSPGVMI 63 Q+S+ +LL +++ ++L+ + IP E + M K + G+ I Sbjct: 2 QESKTVRLLESIKKFRQLSLNFRGNGEIPHREIM----------MLKLIKHHSGEGGITI 51 Query: 64 SKLSELLQISRPTASQMISSMEEKGYTRRVMSTSDRRVIYICLTEKGQAVLQMNLTRYSG 123 S LS L+IS+P SQMI+S+E+K Y R+ SDRR++Y+ LTE G+ L + Sbjct: 52 SSLSAHLEISKPAVSQMINSLEDKNYVERITPKSDRRMVYVRLTELGEEALGVAFHEMQK 111 Query: 124 VLNEIIEKVGRKEIDQLIFLCDRFQEVVNE 153 L +EK+G +++ LI L D+ ++ E Sbjct: 112 KLEIYLEKMGEEDMATLIALLDKLHRIMKE 141 >Q24Z25.1 Q24Z25_DESHY Putative uncharacterized protein Length = 146 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 10/144 (6%) Query: 10 KLLIALENIKRLTTRTQLFASIPRAEFLXXXXFVINASMQKAEQEKETSPGVMISKLSEL 69 +LL +++ ++L+ + IP E + M K + G+ IS LS Sbjct: 2 RLLESIKKFRQLSLNFRGNGEIPHREIM----------MLKLIKHHSGEGGITISSLSAH 51 Query: 70 LQISRPTASQMISSMEEKGYTRRVMSTSDRRVIYICLTEKGQAVLQMNLTRYSGVLNEII 129 L+IS+P SQMI+S+E+K Y R+ SDRR++Y+ LTE G+ L + L + Sbjct: 52 LEISKPAVSQMINSLEDKNYVERITPKSDRRMVYVRLTELGEEALGVAFHEMQKKLEIYL 111 Query: 130 EKVGRKEIDQLIFLCDRFQEVVNE 153 EK+G +++ LI L D+ ++ E Sbjct: 112 EKMGEEDMATLIALLDKLHRIMKE 135 >Q97E33.1 Q97E33_CLOAB Transcriptional regulator, MarR/EmrR family Length = 150 Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 12/133 (9%) Query: 5 DSQER----KLLIALENIKRLTTRTQLFASIPRAEFLXXXXFVINASMQKAEQEKETSPG 60 D++E+ KLL+AL I+++ + I AE + I S++ E G Sbjct: 2 DNKEKEIADKLLLALNQIRKIKFHPKHVDGITHAEMMLL--VCIQKSLEVEE------GG 53 Query: 61 VMISKLSELLQISRPTASQMISSMEEKGYTRRVMSTSDRRVIYICLTEKGQAVLQMNLTR 120 V +S+LS+ L+I+ PT +Q I+SME+ G+ R M +DRRV+ + +TEKG +L+ Sbjct: 54 VKVSQLSKRLKIASPTVTQQINSMEKNGFVERSMDLNDRRVVRVHITEKGDELLKKAEKN 113 Query: 121 YSGVLNEIIEKVG 133 + + +IE +G Sbjct: 114 FWKFIEGLIEYMG 126 >A7VQ95.1 A7VQ95_9CLOT Putative uncharacterized protein Length = 159 Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 71/125 (56%), Gaps = 3/125 (2%) Query: 18 IKRLTTRTQLFASIPRAEFLXXXXF-VINASMQKAEQEKETSPGVMISKLSELLQISRPT 76 ++ LT +F +P + F V+ Q+ +++ V ++LSE++++++P Sbjct: 12 LESLTNMHHVFRCLPPTGVINKGEFYVLQHVFQQMDRKGVNY--VTPTELSEVMEVTKPA 69 Query: 77 ASQMISSMEEKGYTRRVMSTSDRRVIYICLTEKGQAVLQMNLTRYSGVLNEIIEKVGRKE 136 S+M++ +E+KGY R + DRR +Y+ LTEKGQ V + ++ +N II ++G + Sbjct: 70 ISKMLNVLEDKGYIERQQDSKDRRAVYVTLTEKGQGVREESMKIVREAVNRIIRQMGDQA 129 Query: 137 IDQLI 141 D+LI Sbjct: 130 ADRLI 134 >Q8Y9C6.1 Q8Y9C6_LISMO Lmo0606 protein Length = 153 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 57/98 (58%) Query: 55 KETSPGVMISKLSELLQISRPTASQMISSMEEKGYTRRVMSTSDRRVIYICLTEKGQAVL 114 K P + +S L +L+IS+P+ +QMI S+E KG +RV + D+R +Y+ LTE G V Sbjct: 48 KSRGPKIRVSDLGHMLRISKPSVTQMIQSLEGKGLIKRVQNPEDKRSMYVELTEVGAGVS 107 Query: 115 QMNLTRYSGVLNEIIEKVGRKEIDQLIFLCDRFQEVVN 152 + L + ++ E +G ++ +LI L ++ + +N Sbjct: 108 EKMLDEFQASFEDMQEFLGEDDMKKLITLLEKLTDYLN 145 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.131 0.346 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 779,274,397 Number of extensions: 24380999 Number of successful extensions: 89907 Number of sequences better than 1.0e-05: 87 Number of HSP's gapped: 90191 Number of HSP's successfully gapped: 87 Length of query: 174 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 48 Effective length of database: 1,873,648,313 Effective search space: 89935119024 Effective search space used: 89935119024 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)