BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0405.0004.p (297 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D4X3.1 B1D4X3_9BACL ABC transporter related 419 e-115 Q65NQ7.1 Q65NQ7_BACLD Putative uncharacterized protein 414 e-114 B4BKA6.1 B4BKA6_9BACI ABC transporter-related protein 367 e-100 A4IN43.1 A4IN43_GEOTN ABC transporter ATP-binding protein 366 1e-99 C2VEZ0.1 C2VEZ0_BACCE ABC transporter ATP-binding protein 364 5e-99 >B1D4X3.1 B1D4X3_9BACL ABC transporter related Length = 300 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 204/292 (69%), Positives = 230/292 (78%), Gaps = 1/292 (0%) Query: 1 MLKVEGLSKRFSNGRGIDNVSFTVHQGEVFGFLGPNGAGKSTTIRHIMGFMQPDRGSVTI 60 ML V+GL+K F G+GI +VSFTV QGEVFGFLGPNGAGKSTTIRHIMGFM+PDRGS +I Sbjct: 1 MLVVDGLTKLFPGGKGITDVSFTVKQGEVFGFLGPNGAGKSTTIRHIMGFMKPDRGSASI 60 Query: 61 GGLDAWKGQGTVQKLTGYLPGEINFIDGMTGTSFLNFMTSMQGMKDTSKRDRLIQRLQFD 120 GLD WK QGTVQ+L GYLPGEI FI+GMTG FL F+ MQ + ++R LI+RLQFD Sbjct: 61 KGLDTWKQQGTVQRLVGYLPGEIAFIEGMTGKEFLAFLARMQRVDSAARRKELIERLQFD 120 Query: 121 AATPIRKMSKGMKQKVGIVAAFMHSPKLIILDEPTSGLDPLMQRVFIELVLEEKAAGTTF 180 +TPIRKMSKGMKQKVGIVAAFMH P+LIILDEPTSGLDPLMQ++FIELVLEEKA GTTF Sbjct: 121 VSTPIRKMSKGMKQKVGIVAAFMHRPELIILDEPTSGLDPLMQQLFIELVLEEKARGTTF 180 Query: 181 LMSSHSFQEIERTCDRAAIIKDGRIVTVKNIHELQSMQRKLFXXXXXXXXXXXXXXXSG- 239 LMSSHSF EIERTCDRAAIIKDG IV NIHELQSMQRKL SG Sbjct: 181 LMSSHSFPEIERTCDRAAIIKDGVIVATNNIHELQSMQRKLVAIVFEHPEDAEAFAQSGR 240 Query: 240 LQVESHEGNRVRIAIQGDYAAFTQELAHYAVRSIDISTQNLEDIFMNYYDRD 291 + VES +G RV +A+QG+Y E A Y VRS+DI+ QNLED+FM YYDR+ Sbjct: 241 VPVESRDGRRVTVAVQGNYNELIHEAAKYKVRSLDITAQNLEDVFMQYYDRN 292 >Q65NQ7.1 Q65NQ7_BACLD Putative uncharacterized protein Length = 295 Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust. Identities = 197/290 (67%), Positives = 235/290 (81%) Query: 1 MLKVEGLSKRFSNGRGIDNVSFTVHQGEVFGFLGPNGAGKSTTIRHIMGFMQPDRGSVTI 60 ML VE L+K+FSNG+GI ++SF V +GEVFGFLGPNGAGKSTTIRHIMGFM+PD+G + + Sbjct: 1 MLTVERLTKKFSNGKGIFDLSFHVQKGEVFGFLGPNGAGKSTTIRHIMGFMKPDQGDIKV 60 Query: 61 GGLDAWKGQGTVQKLTGYLPGEINFIDGMTGTSFLNFMTSMQGMKDTSKRDRLIQRLQFD 120 G+D K QG +Q+ GYLPGEI FI+GMTG FL+FM M G+KDT+KR+ LI+RLQFD Sbjct: 61 NGMDVLKQQGDIQRHIGYLPGEIAFIEGMTGKQFLDFMADMHGLKDTAKRNDLIERLQFD 120 Query: 121 AATPIRKMSKGMKQKVGIVAAFMHSPKLIILDEPTSGLDPLMQRVFIELVLEEKAAGTTF 180 TPIRKMSKGMKQKVGIVAAFMHSP++IILDEPTSGLDPLMQ+VFIE+VLEEKA GTTF Sbjct: 121 VHTPIRKMSKGMKQKVGIVAAFMHSPEVIILDEPTSGLDPLMQKVFIEIVLEEKAKGTTF 180 Query: 181 LMSSHSFQEIERTCDRAAIIKDGRIVTVKNIHELQSMQRKLFXXXXXXXXXXXXXXXSGL 240 LMSSHSF EIERTCDRAAIIKDG I+ VK+IHELQSMQRK+F S L Sbjct: 181 LMSSHSFPEIERTCDRAAIIKDGIIIAVKDIHELQSMQRKVFEVTFENTGDIPAFMNSSL 240 Query: 241 QVESHEGNRVRIAIQGDYAAFTQELAHYAVRSIDISTQNLEDIFMNYYDR 290 Q+ES NRV++A+ G++ F +E A Y +R ID S+Q+LE+IFMNYY+R Sbjct: 241 QIESRTDNRVKVAVLGNHDQFIKETAKYHIRHIDASSQSLEEIFMNYYNR 290 >B4BKA6.1 B4BKA6_9BACI ABC transporter-related protein Length = 295 Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust. Identities = 174/290 (60%), Positives = 216/290 (74%) Query: 1 MLKVEGLSKRFSNGRGIDNVSFTVHQGEVFGFLGPNGAGKSTTIRHIMGFMQPDRGSVTI 60 M++++ L+K F NGRGI +V+FTV QGEVFGFLGPNGAGKSTTIRH++GF++P +G I Sbjct: 1 MIELQQLTKVFPNGRGIFDVTFTVRQGEVFGFLGPNGAGKSTTIRHLLGFLKPTKGRAFI 60 Query: 61 GGLDAWKGQGTVQKLTGYLPGEINFIDGMTGTSFLNFMTSMQGMKDTSKRDRLIQRLQFD 120 G D W+ V+ L GYLPGEI F +GMTG L+ + M+ MK T RD LI+RLQ D Sbjct: 61 HGFDCWRESVRVKALVGYLPGEIAFPEGMTGMELLDLLAGMRRMKTTRYRDELIERLQLD 120 Query: 121 AATPIRKMSKGMKQKVGIVAAFMHSPKLIILDEPTSGLDPLMQRVFIELVLEEKAAGTTF 180 PIRKMSKG KQKVG+VAA MH+P++IILDEPTSGLDPLMQ+ FI+L+ EEK G T Sbjct: 121 TRLPIRKMSKGTKQKVGLVAALMHNPEVIILDEPTSGLDPLMQQTFIDLLREEKQKGKTI 180 Query: 181 LMSSHSFQEIERTCDRAAIIKDGRIVTVKNIHELQSMQRKLFXXXXXXXXXXXXXXXSGL 240 +SSH F EIERTCDR AI+KDGR++ V ++HELQSMQRKLF S L Sbjct: 181 FLSSHIFPEIERTCDRVAIMKDGRLMAVNDVHELQSMQRKLFDVMLSREEEVAQLLSSPL 240 Query: 241 QVESHEGNRVRIAIQGDYAAFTQELAHYAVRSIDISTQNLEDIFMNYYDR 290 +V H+G RV IA+QGDY AF +ELA Y V+++D+ TQ+LEDIFM+YYDR Sbjct: 241 EVIHHDGRRVCIAVQGDYNAFIRELAQYQVQNLDLRTQSLEDIFMHYYDR 290 >A4IN43.1 A4IN43_GEOTN ABC transporter ATP-binding protein Length = 311 Score = 366 bits (940), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 174/290 (60%), Positives = 216/290 (74%) Query: 1 MLKVEGLSKRFSNGRGIDNVSFTVHQGEVFGFLGPNGAGKSTTIRHIMGFMQPDRGSVTI 60 M++++ L+K F NGRGI +V+FTV QGEVFGFLGPNGAGKSTTIRH++GF++P +G I Sbjct: 19 MIELQQLTKVFPNGRGIFDVTFTVRQGEVFGFLGPNGAGKSTTIRHLLGFLKPTKGRAFI 78 Query: 61 GGLDAWKGQGTVQKLTGYLPGEINFIDGMTGTSFLNFMTSMQGMKDTSKRDRLIQRLQFD 120 G D W+ V+ L GYLPGEI F +GMTG L+ + M+ MK T RD LI+RLQ D Sbjct: 79 HGFDCWRESVRVKALVGYLPGEIAFPEGMTGMELLDLLAGMRRMKTTRYRDELIERLQLD 138 Query: 121 AATPIRKMSKGMKQKVGIVAAFMHSPKLIILDEPTSGLDPLMQRVFIELVLEEKAAGTTF 180 PIRKMSKG KQKVG+VAA MH+P++IILDEPTSGLDPLMQ+ FI+L+ EEK G T Sbjct: 139 TRLPIRKMSKGTKQKVGLVAALMHNPEVIILDEPTSGLDPLMQQTFIDLLREEKQKGKTI 198 Query: 181 LMSSHSFQEIERTCDRAAIIKDGRIVTVKNIHELQSMQRKLFXXXXXXXXXXXXXXXSGL 240 +SSH F EIERTCDR AI+KDGR++ V ++HELQSMQRKLF S L Sbjct: 199 FLSSHIFPEIERTCDRVAIMKDGRLMAVNDVHELQSMQRKLFDVMLSREEEVAQLLSSPL 258 Query: 241 QVESHEGNRVRIAIQGDYAAFTQELAHYAVRSIDISTQNLEDIFMNYYDR 290 +V H+G RV IA+QGDY AF +ELA Y V+++D+ TQ+LEDIFM+YYDR Sbjct: 259 EVIHHDGRRVCIAVQGDYNAFIRELAQYQVQNLDLRTQSLEDIFMHYYDR 308 >C2VEZ0.1 C2VEZ0_BACCE ABC transporter ATP-binding protein Length = 297 Score = 364 bits (935), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 171/297 (57%), Positives = 217/297 (73%) Query: 1 MLKVEGLSKRFSNGRGIDNVSFTVHQGEVFGFLGPNGAGKSTTIRHIMGFMQPDRGSVTI 60 M+ V+ ++K+FSNG+G+ +++F V +GEVFG+LGPNGAGKSTTIR++MGF++P G TI Sbjct: 1 MISVQDVTKQFSNGKGLFHITFDVKEGEVFGYLGPNGAGKSTTIRNLMGFIKPTAGKATI 60 Query: 61 GGLDAWKGQGTVQKLTGYLPGEINFIDGMTGTSFLNFMTSMQGMKDTSKRDRLIQRLQFD 120 GLD W +Q+ GYLPGEI+FIDGM G FL M M+G+KDT +RD LI RLQFD Sbjct: 61 FGLDCWNEAAKIQREVGYLPGEISFIDGMNGLEFLKLMQGMRGLKDTKRRDELIDRLQFD 120 Query: 121 AATPIRKMSKGMKQKVGIVAAFMHSPKLIILDEPTSGLDPLMQRVFIELVLEEKAAGTTF 180 TPIRKMSKGMKQKVGIVAAFMH P+++ILDEPTSGLDPLMQ+VFIEL++EEK G T Sbjct: 121 VKTPIRKMSKGMKQKVGIVAAFMHDPEVLILDEPTSGLDPLMQQVFIELIVEEKQRGKTI 180 Query: 181 LMSSHSFQEIERTCDRAAIIKDGRIVTVKNIHELQSMQRKLFXXXXXXXXXXXXXXXSGL 240 LMSSH F EIERTCDR AIIKDGR+VTV+NIH+LQSM+R++ L Sbjct: 181 LMSSHIFTEIERTCDRVAIIKDGRLVTVENIHDLQSMRRQVIDVTVSSQEEIESLTKCNL 240 Query: 241 QVESHEGNRVRIAIQGDYAAFTQELAHYAVRSIDISTQNLEDIFMNYYDRDREVTAE 297 Q E+ +G I +QG+Y Q L++Y V ++ +LE +FM+YYD+ VT E Sbjct: 241 QFEAVKGREASIIVQGNYQTVLQTLSNYNVTALQTRAMDLEHLFMHYYDKKEGVTHE 297 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,564,782,763 Number of extensions: 60024185 Number of successful extensions: 431181 Number of sequences better than 1.0e-05: 65026 Number of HSP's gapped: 376195 Number of HSP's successfully gapped: 68781 Length of query: 297 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 162 Effective length of database: 1,788,859,178 Effective search space: 289795186836 Effective search space used: 289795186836 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)