BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0405.0003.p (334 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D4X4.1 B1D4X4_9BACL Putative uncharacterized protein 266 3e-69 Q65NQ8.1 Q65NQ8_BACLD Putative uncharacterized protein 245 5e-63 Q637N2.1 Q637N2_BACCZ ABC transporter, permease 186 2e-45 A0RGY6.1 A0RGY6_BACAH ABC transporter, permease component 186 2e-45 B3ZN36.1 B3ZN36_BACCE ABC transporter, permease protein 186 2e-45 >B1D4X4.1 B1D4X4_9BACL Putative uncharacterized protein Length = 270 Score = 266 bits (679), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 128/240 (53%), Positives = 170/240 (70%) Query: 1 MNFSLYKEMMRVNLKGIMNYAVGSAFYMLFMIWLYPGLGGSTAAIDELVKAMPEGVGNAF 60 MNF L+K+MM+++LKG+ NYA GSAFY+L M WLYPG+ +T A++EL+K+MPEGV +AF Sbjct: 1 MNFPLFKQMMKIHLKGMSNYAFGSAFYILLMFWLYPGIADNTGALNELIKSMPEGVVSAF 60 Query: 61 GLNSGFASAEAFISGEYYGXXXXXXXXXXXXXXSTQLIARLVDRGSMAYLLATPTTRRKV 120 + GF S EAFISGEYYG ST L+AR+VD+GSM+YLL+TPTTRR+V Sbjct: 61 NIQGGFGSMEAFISGEYYGLILPLLLSIFSIMLSTGLMARMVDQGSMSYLLSTPTTRRQV 120 Query: 121 AFTQGLVLVTSLFIILAVTLLSGFAGKSWFLGTKYEFDMGRFTQLNTVAFLLFFAIGGLC 180 A TQ VL T L II+ VT +G G W +G K+EF+ R+ ++N VA++LF A G+ Sbjct: 121 ALTQAGVLSTGLLIIMLVTTGAGLLGYVWLIGNKFEFNGARYLEMNAVAWMLFIAASGIS 180 Query: 181 FLISCACNDEKKALGISGAVTFGFFTLDLLGKISGKLDVLRYFTLFSFYRPAHIVQGTAE 240 FLIS NDEKKALG SG + G F LD+LGKIS ++ LRY ++F+ YRP+ I G+ + Sbjct: 181 FLISSIMNDEKKALGTSGFIVIGMFALDMLGKISDSVEWLRYISIFALYRPSDIAAGSGD 240 >Q65NQ8.1 Q65NQ8_BACLD Putative uncharacterized protein Length = 270 Score = 245 bits (625), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 128/246 (52%), Positives = 172/246 (69%) Query: 1 MNFSLYKEMMRVNLKGIMNYAVGSAFYMLFMIWLYPGLGGSTAAIDELVKAMPEGVGNAF 60 MN SLYK+M+R N+KGIM+Y VGSAFY+L ++ +YP + G+ I++++K+MPEG NAF Sbjct: 1 MNLSLYKQMLRTNMKGIMSYGVGSAFYILLILGIYPSIAGNAEDIEKMIKSMPEGFLNAF 60 Query: 61 GLNSGFASAEAFISGEYYGXXXXXXXXXXXXXXSTQLIARLVDRGSMAYLLATPTTRRKV 120 G +G + E FISGEYYG ST+L+A+ VD+GSMAY+L+ PTTR KV Sbjct: 61 GFENGLGNLEDFISGEYYGLIFIVILSIFSVMLSTKLLAKRVDQGSMAYILSAPTTRGKV 120 Query: 121 AFTQGLVLVTSLFIILAVTLLSGFAGKSWFLGTKYEFDMGRFTQLNTVAFLLFFAIGGLC 180 AFTQ VL T L II+AVT +G AG LG Y+F++ RF LN + FLLFFA+GG+ Sbjct: 121 AFTQAAVLTTGLLIIMAVTTAAGLAGYHLMLGGDYDFNVSRFLVLNLLGFLLFFAVGGIS 180 Query: 181 FLISCACNDEKKALGISGAVTFGFFTLDLLGKISGKLDVLRYFTLFSFYRPAHIVQGTAE 240 FL S NDEK+ALG+SG +TF FF+ DLLGK+S K + LR ++FS +RP IV G+ + Sbjct: 181 FLFSAISNDEKRALGLSGGITFLFFSFDLLGKLSEKTEWLRSLSVFSLFRPGDIVNGSTD 240 Query: 241 VMQICL 246 + Q+ L Sbjct: 241 IAQVSL 246 >Q637N2.1 Q637N2_BACCZ ABC transporter, permease Length = 268 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 92/241 (38%), Positives = 140/241 (58%), Gaps = 2/241 (0%) Query: 1 MNFSLYKEMMRVNLKGIMNYAVGSAFYMLFMIWLYPGLGGSTAAIDELVKAMPEGVGNAF 60 MN L+ ++ K I++YA G+A Y+ +IW++P + S ++EL+ AMP+ V Sbjct: 1 MNKQLFLASLKETQKSILSYATGAALYLWLLIWIFPSMV-SAKGLNELISAMPDSVKKIV 59 Query: 61 GLNSGFASAEAFISGEYYGXXXXXXXXXXXXXXSTQLIARLVDRGSMAYLLATPTTRRKV 120 G+ S + F++GEYY +T LIAR VD+G+MAYLLATP +R K+ Sbjct: 60 GMESPIQNVMDFLAGEYYSLLFIIILTIFCVTVATHLIARHVDKGAMAYLLATPVSRVKI 119 Query: 121 AFTQGLVLVTSLFIILAVTLLSGFAGKSWFLGTKYEFDMGRFTQLNTVAFLLFFAIGGLC 180 A TQ VL+ L II+ VT ++G G WFL + F ++N V L+F + Sbjct: 120 AITQAAVLILGLLIIVVVTYVAGIVGAEWFLQDN-NLNKELFLKINIVGGLIFLVVSAYS 178 Query: 181 FLISCACNDEKKALGISGAVTFGFFTLDLLGKISGKLDVLRYFTLFSFYRPAHIVQGTAE 240 F SC CNDE+KAL S ++T FF L+++GK+S KL+ ++ +LF+ +RP I +GT Sbjct: 179 FFFSCICNDERKALSYSASLTILFFVLNMVGKLSDKLEWMKSLSLFTLFRPKEIAEGTYN 238 Query: 241 V 241 + Sbjct: 239 I 239 >A0RGY6.1 A0RGY6_BACAH ABC transporter, permease component Length = 268 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 92/241 (38%), Positives = 140/241 (58%), Gaps = 2/241 (0%) Query: 1 MNFSLYKEMMRVNLKGIMNYAVGSAFYMLFMIWLYPGLGGSTAAIDELVKAMPEGVGNAF 60 MN L+ ++ K I++YA G+A Y+ +IW++P + S ++EL+ AMP+ V Sbjct: 1 MNKQLFLASLKETQKSILSYATGAALYLWLLIWIFPSMV-SAKGLNELISAMPDSVKKIV 59 Query: 61 GLNSGFASAEAFISGEYYGXXXXXXXXXXXXXXSTQLIARLVDRGSMAYLLATPTTRRKV 120 G+ S + F++GEYY +T LIAR VD+G+MAYLLATP +R K+ Sbjct: 60 GMESPIQNVMDFLAGEYYSLLFIIILTIFCVTVATHLIARHVDKGAMAYLLATPVSRVKI 119 Query: 121 AFTQGLVLVTSLFIILAVTLLSGFAGKSWFLGTKYEFDMGRFTQLNTVAFLLFFAIGGLC 180 A TQ VL+ L II+ VT ++G G WFL + F ++N V L+F + Sbjct: 120 AITQAAVLILGLLIIVVVTYVAGIVGAEWFLQDN-NLNKELFLKINIVGGLIFLVVSAYS 178 Query: 181 FLISCACNDEKKALGISGAVTFGFFTLDLLGKISGKLDVLRYFTLFSFYRPAHIVQGTAE 240 F SC CNDE+KAL S ++T FF L+++GK+S KL+ ++ +LF+ +RP I +GT Sbjct: 179 FFFSCICNDERKALSYSASLTILFFVLNMVGKLSDKLEWMKSLSLFTLFRPKEIAEGTYN 238 Query: 241 V 241 + Sbjct: 239 I 239 >B3ZN36.1 B3ZN36_BACCE ABC transporter, permease protein Length = 268 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 92/241 (38%), Positives = 140/241 (58%), Gaps = 2/241 (0%) Query: 1 MNFSLYKEMMRVNLKGIMNYAVGSAFYMLFMIWLYPGLGGSTAAIDELVKAMPEGVGNAF 60 MN L+ ++ K I++YA G+A Y+ +IW++P + S ++EL+ AMP+ V Sbjct: 1 MNKQLFLASLKETQKSILSYATGAALYLWLLIWIFPSMV-SAKGLNELISAMPDSVKKIV 59 Query: 61 GLNSGFASAEAFISGEYYGXXXXXXXXXXXXXXSTQLIARLVDRGSMAYLLATPTTRRKV 120 G+ S + F++GEYY +T LIAR VD+G+MAYLLATP +R K+ Sbjct: 60 GMESPIQNVMDFLAGEYYSLLFIIILTIFCVTVATHLIARHVDKGAMAYLLATPVSRVKI 119 Query: 121 AFTQGLVLVTSLFIILAVTLLSGFAGKSWFLGTKYEFDMGRFTQLNTVAFLLFFAIGGLC 180 A TQ VL+ L II+ VT ++G G WFL + F ++N V L+F + Sbjct: 120 AITQAAVLILGLLIIVVVTYVAGIVGAEWFLQDN-NLNKELFLKINIVGGLIFLVVSAYS 178 Query: 181 FLISCACNDEKKALGISGAVTFGFFTLDLLGKISGKLDVLRYFTLFSFYRPAHIVQGTAE 240 F SC CNDE+KAL S ++T FF L+++GK+S KL+ ++ +LF+ +RP I +GT Sbjct: 179 FFFSCICNDERKALSYSASLTILFFVLNMVGKLSDKLEWMKSLSLFTLFRPKEIAEGTYN 238 Query: 241 V 241 + Sbjct: 239 I 239 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.142 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,671,017,750 Number of extensions: 58198191 Number of successful extensions: 172181 Number of sequences better than 1.0e-05: 112 Number of HSP's gapped: 171962 Number of HSP's successfully gapped: 113 Length of query: 334 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 198 Effective length of database: 1,779,438,163 Effective search space: 352328756274 Effective search space used: 352328756274 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)