BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0405.0002.p (401 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DAA4.1 B1DAA4_9BACL ROK family protein 289 3e-76 B1DCZ9.1 B1DCZ9_9BACL ROK family protein 282 4e-74 B8FTN1.1 B8FTN1_DESHD ROK family protein 181 2e-43 Q24T99.1 Q24T99_DESHY Putative uncharacterized protein 176 3e-42 A5N1R7.1 A5N1R7_CLOK5 Predicted transcriptional regulator 176 4e-42 >B1DAA4.1 B1DAA4_9BACL ROK family protein Length = 397 Score = 289 bits (740), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 155/374 (41%), Positives = 213/374 (56%), Gaps = 3/374 (0%) Query: 11 SRTKEMYLSVRKKGTVSKQTLLEESGLTVSTLTRIXXXXXXXXXXXEVGFGESTGGRRPT 70 S + +Y + G ++K LLE +T ST+TR+ G G S GGR+P Sbjct: 10 SHKQLIYDYIANLGPIAKAELLEAHDITSSTMTRLLDDMAKEGLILVTGLGPSKGGRKPL 69 Query: 71 LYETNPAYGYVFGLEISRTFSRXXXXXXXXXXXDEYSWPMDEQATPERLIESVHAQVLRM 130 LY+ NP YGY+FGLEISR S W MDE TPERL+ + +L Sbjct: 70 LYQINPDYGYIFGLEISRFTSTLGLFDLNMNQKSVVRWRMDETMTPERLVAHTVSLMLAF 129 Query: 131 LEQASIDISQVIGLGIGAVGPLDRKEGMILQPAGFAAPGWSQVPVKERLEQLLDVPVCLD 190 ++ +I S+++GLGIGAVGPLDR G+I+ P F A GW QVP+ E+ +P L+ Sbjct: 130 MKDHAISQSRILGLGIGAVGPLDRSSGVIVNPQYFPAKGWQQVPICALFEEAAGLPTLLE 189 Query: 191 NGANTALLGEYWAGGDRRQHQLLYLHAGIGLRSAIMNEGRILYGVIDTEGAVGQMIIEXX 250 NGANTAL+GE+W+ LY+ AGI LRSA+M+ GRI+YG +D EG++GQMII+ Sbjct: 190 NGANTALVGEHWSIRQENVEHALYVSAGISLRSAMMSHGRIVYGKVDMEGSIGQMIID-V 248 Query: 251 XXXXXXXXXXXXAWESYVSIRTLEMQAREEWKRGRPTLLRELAGRPEDIEFAHLVEALQA 310 + E++ S++ LE Q R K G LL + PE + + L A Sbjct: 249 DGPRLEESGNYGSLETFASVQALERQVRTRLKVGGSLLLNNVV--PEKVNLDTITAGLNA 306 Query: 311 GDSVVNGIFGQAAAYCGIGLANLINILHPEEVILGGPLFSAADFFYREATRTALEKTYYR 370 GD + +F Q+A+Y G+GLANLIN HPE +ILGG L SA+ +YR AT A++KTYY Sbjct: 307 GDPFIREMFRQSASYFGVGLANLINTFHPELIILGGALISASPMYYRVATEVAVKKTYYG 366 Query: 371 GQYKVRFTQGSLSD 384 Y +F+ G L + Sbjct: 367 EAYIPQFSMGRLKE 380 >B1DCZ9.1 B1DCZ9_9BACL ROK family protein Length = 400 Score = 282 bits (722), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 168/390 (43%), Positives = 224/390 (57%), Gaps = 7/390 (1%) Query: 16 MYLSVRKKGTVSKQTLLEESGLTVSTLTRIXXXXXXXXXXXEVGFGESTGGRRPTLYETN 75 +Y + ++G VS+ L++E + S++TR+ E G G STGGRRP LYETN Sbjct: 11 VYTYIAQRGVVSRAELIKEFSMPSSSMTRLLDEMIEGNKLREHGRGSSTGGRRPILYETN 70 Query: 76 PAYGYVFGLEISRTFSRXXXXXXXXXXXDEYSWPMDEQATPERLIESVHAQVLRMLEQAS 135 P YGY+FGLEISR +S W MDE TP + V V R L++ Sbjct: 71 PTYGYLFGLEISRIYSSIGLYDMHMNRLSAIRWKMDESMTPGVFLNRVQEAVQRFLQENG 130 Query: 136 IDISQVIGLGIGAVGPLDRKEGMILQPAGFAAPGWSQVPVKERLEQLLDVPVCLDNGANT 195 + S V+G+G+GAVGPLDR+ G+IL P F A GW +P+ E LE+ L PV LDNGANT Sbjct: 131 LQPSSVVGMGVGAVGPLDRERGLILDPVYFPAQGWHNLPICELLEERLGFPVLLDNGANT 190 Query: 196 ALLGEYWAGGDRRQHQLLYLHAGIGLRSAIMNEGRILYGVIDTEGAVGQMIIEXXXXXXX 255 AL+GE+WA +LY+H G GLRSA+M+ G+++YG D EGA+G+MII+ Sbjct: 191 ALVGEHWALRSEHYQHMLYVHVGAGLRSAVMSNGQLVYGATDMEGAIGRMIIQ-AGDLSQ 249 Query: 256 XXXXXXXAWESYVSIRTLEMQAREEWKRGRPTLLRELAGRPEDIE------FAHLVEALQ 309 + ES+VS+ +E + RE G T RE+ G D + F L+ AL Sbjct: 250 PGSAINGSLESFVSVHAIENEVRELALAGTLTHGREVRGSGSDSDNGEIWSFEKLLHALT 309 Query: 310 AGDSVVNGIFGQAAAYCGIGLANLINILHPEEVILGGPLFSAADFFYREATRTALEKTYY 369 AGD +V F QAAAY GIGLANLIN+LHPE+VILGG L +A + + A A TYY Sbjct: 310 AGDIMVQEKFKQAAAYLGIGLANLINVLHPEKVILGGALINAHESVFETAVEVARSHTYY 369 Query: 370 RGQYKVRFTQGSLSDTXXXXXXXXLILNQL 399 QYK F++G L + ++L QL Sbjct: 370 YPQYKPLFSKGLLKEEAVAAGAAVMVLKQL 399 >B8FTN1.1 B8FTN1_DESHD ROK family protein Length = 406 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 107/358 (29%), Positives = 178/358 (49%), Gaps = 7/358 (1%) Query: 23 KGTVSKQTLLEESGLTVSTLTRIXXXXXXXXXXXEVGFGESTGGRRPTLYETNPAYGYVF 82 KG ++K L + +GL ++TL R+ GESTGGR+P +Y+ NP YV Sbjct: 29 KGGMTKSQLAKVAGLKLTTLNRMMLPLEKADLILPTETGESTGGRKPVIYDVNPRRYYVI 88 Query: 83 GLEISRTFSRXXXXXXXXXXXDEYSWPMDEQATPERLIESVHAQVLRMLEQASIDISQVI 142 G++ISR +S+ ++ + MD ++P+ + + + R++E+ VI Sbjct: 89 GIDISRLYSQVVLTNLKMELIEKDRFDMDRNSSPQATLNRILDWIGRVMEKRGH--GYVI 146 Query: 143 GLGIGAVGPLDRKEGMILQPAGFAAPGWSQVPVKERLEQLLDVPVCLDNGANTALLGEYW 202 G+GIG VGPLDR+ G+IL P F A GW +P+K +E+ +PV +DNGAN A+L E Sbjct: 147 GVGIGTVGPLDRQSGIILNPENFEAQGWENIPLKAIVEERTGLPVIIDNGANGAVLAETR 206 Query: 203 AGGDRRQHQLLYLHAGIGLRSAIMNEGRILYGVIDTEGAVGQMIIEXXXXXXXXXXXXXX 262 G + ++YL+ G+G+R+ +++ G ++ + D + M+I+ Sbjct: 207 YGSGKGMKSVIYLNCGVGIRTGVISSGTLVRTINDADDTFAHMVID--VNGKPCHCGNQG 264 Query: 263 AWESYVSIRTLEMQAREEWKRGRPTLLRELAGRPEDIEFAHLVEALQAGDSVVNGIFGQA 322 E Y SI + EE +G+ + A RP + + L + D++ + A Sbjct: 265 CVERYSSIYAIMEALAEEMPQGKDRRNHK-ADRP--VSYLELCREAEENDTIARQVLQNA 321 Query: 323 AAYCGIGLANLINILHPEEVILGGPLFSAADFFYREATRTALEKTYYRGQYKVRFTQG 380 A G GLAN I +L+P V+L GPL + FY A + + + F++G Sbjct: 322 AVRMGTGLANFIQLLNPGLVVLSGPLILHSQLFYEVCVEAAKRRRPWDKGGHLVFSRG 379 >Q24T99.1 Q24T99_DESHY Putative uncharacterized protein Length = 397 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 108/363 (29%), Positives = 178/363 (49%), Gaps = 12/363 (3%) Query: 23 KGTVSKQTLLEESGLTVSTLTRIXXXXXXXXXXXEVGFGESTGGRRPTLYETNPAYGYVF 82 KG ++K L + +GL ++TL R+ GESTGGR+P +Y+ NP YV Sbjct: 15 KGGMTKSQLAKVAGLKLTTLNRMMLPLEKEDLILPTETGESTGGRKPVIYDVNPRRYYVI 74 Query: 83 GLEISRTFSRXXXXXXXXXXXDEYSWPMDEQATPERLIESVHAQVLRMLEQASIDISQVI 142 G++ISR +S+ ++ + MD ++P+ + + + R++E+ VI Sbjct: 75 GIDISRLYSQVVLTNLKMELLEKDRFDMDRNSSPQATLNRILDWIGRIMEKRGH--GYVI 132 Query: 143 GLGIGAVGPLDRKEGMILQPAGFAAPGWSQVPVKERLEQLLDVPVCLDNGANTALLGEYW 202 G+GIG VGPLDR+ G+IL P F A GW +P+K +E+ +PV +DNGAN A+L E Sbjct: 133 GVGIGTVGPLDRQSGIILNPENFEAQGWENIPLKAIVEERTGLPVIIDNGANGAVLAETR 192 Query: 203 AGGDRRQHQLLYLHAGIGLRSAIMNEGRILYGVIDTEGAVGQMIIEXXXXXXXXXXXXXX 262 G + ++YL+ G+G+R+ +++ G ++ + D + M+I+ Sbjct: 193 YGSGKGMKSVIYLNCGVGIRTGVISSGTLVRTINDADDTFAHMVID--VNGKPCHCGNQG 250 Query: 263 AWESYVSIRTL-----EMQAREEWKRGRPTLLRELAGRPEDIEFAHLVEALQAGDSVVNG 317 E Y SI + E EE +G+ + A RP + + L + D+ Sbjct: 251 CVERYSSIYAIMEALAEEMTPEEMPQGKDRRNHK-ADRP--VSYLELCREAEESDTTARK 307 Query: 318 IFGQAAAYCGIGLANLINILHPEEVILGGPLFSAADFFYREATRTALEKTYYRGQYKVRF 377 + AA G GLAN I +L+P V+L GPL + FY A + + + F Sbjct: 308 VLENAAVRMGTGLANFIQLLNPGLVVLSGPLILHSQLFYEVCVEAAKRRRPWDKGGHLVF 367 Query: 378 TQG 380 ++G Sbjct: 368 SRG 370 >A5N1R7.1 A5N1R7_CLOK5 Predicted transcriptional regulator Length = 402 Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 105/354 (29%), Positives = 181/354 (51%), Gaps = 7/354 (1%) Query: 14 KEMYLSVRKKGTVSKQTLLEESGLTVSTLTRIXXXXXXXXXXXEVGFGESTGGRRPTLYE 73 K+++ ++K G +SK + + + ++TL + E GESTGGRRP LY+ Sbjct: 16 KKIFNLLQKNGRLSKNKISSRTDIKLTTLNYVMEPLEKSKMIVESCIGESTGGRRPILYD 75 Query: 74 TNPAYGYVFGLEISRTFSRXXXXXXXXXXXDEYSWPMDEQATPERLIESVHAQVLRMLEQ 133 N Y+ G++IS +++ + + MD+ TP ++ V + R Sbjct: 76 ININDFYIIGIDISILYTQVVITNLKMEILYKELFNMDDSYTPCETVKKVVEIINRAYAN 135 Query: 134 ASIDISQVIGLGIGAVGPLDRKEGMILQPAGFAAPGWSQVPVKERLEQLLDVPVCLDNGA 193 ++ +++G+G+G+VGPLD K G+I P F A W+ VP+K+ LE+ L PV ++NGA Sbjct: 136 LNLSHMKLLGIGVGSVGPLDIKNGIIKNPVDFFADKWTDVPIKKMLEEKLKHPVIVENGA 195 Query: 194 NTALLGEYWAGGDRRQHQLLYLHAGIGLRSAIMNEGRILYGVIDTEGAVGQMIIEXXXXX 253 N A++ EY+ G R + + + GIG+R+ ++ G ++ + D E A G M I+ Sbjct: 196 NAAVVAEYFYGVGRGIENIAFFNCGIGIRTGTISSGHLIRTINDEEEAFGHMTID--IDG 253 Query: 254 XXXXXXXXXAWESYVSIRTLEMQAREEWKRGRPTLLRELAGRP-EDIEFAHLVEALQAGD 312 E Y +I+ + ++ K+GR T++ +P E+I++ + A + GD Sbjct: 254 EKCKCGNYGCLECYSTIKAIIKNISKKIKKGRHTIIN----KPVEEIDYKDVCLAAEMGD 309 Query: 313 SVVNGIFGQAAAYCGIGLANLINILHPEEVILGGPLFSAADFFYREATRTALEK 366 + I AA G GL+N I +L P+ VIL GPL + FY ++ L+ Sbjct: 310 ELSIDIITDAALILGSGLSNYIKLLSPKLVILTGPLIINSKLFYEVCVKSTLKN 363 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,120,818,904 Number of extensions: 82685297 Number of successful extensions: 167887 Number of sequences better than 1.0e-05: 1915 Number of HSP's gapped: 166435 Number of HSP's successfully gapped: 1915 Length of query: 401 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 263 Effective length of database: 1,760,596,133 Effective search space: 463036782979 Effective search space used: 463036782979 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)