BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0046.p (327 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D631.1 B1D631_9BACL Cation diffusion facilitator family transp... 489 e-136 C0Z4X9.1 C0Z4X9_BREBN Conserved hypothetical membrane protein 434 e-120 Q2BDX4.1 Q2BDX4_9BACI Putative uncharacterized protein 383 e-104 Q2BAU4.1 Q2BAU4_9BACI Putative uncharacterized protein 382 e-104 B3KBA1.1 B3KBA1_9BACI Cation diffusion facilitator family transp... 377 e-102 >B1D631.1 B1D631_9BACL Cation diffusion facilitator family transporter Length = 329 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 233/326 (71%), Positives = 277/326 (84%), Gaps = 1/326 (0%) Query: 2 EQTSESLGSLIRKGNKSSGSAAIGNTCIAVVKAVAFALTGSGSMFATMMHSIADAVNQLF 61 ++ +S SL++KGN SS +AA+GNT +A+VK VA +TGSG+MFA+ MHSIADAVNQ F Sbjct: 4 DRNKDSFWSLLKKGNTSSATAAVGNTAVAIVKGVAAVMTGSGAMFASTMHSIADAVNQGF 63 Query: 62 VFTGSVLAEKRPTRRFPDGFGRVINLFCMVAVIVVTIMAYETMLEGFHLLKHPAEESGGY 121 VF GSVLAEK+PT+RFP GFGRVINLFCM+AVIVVT+MAYET+ EGFHLL HP+E S G+ Sbjct: 64 VFAGSVLAEKKPTQRFPTGFGRVINLFCMIAVIVVTVMAYETIREGFHLLAHPSE-SHGF 122 Query: 122 WINVIVLLLSIGADGFVWVKAMNEVLHESRIEAKGLRKFTASLKNVKRAAPPTRLVFYED 181 WIN I+LL+SIG DGFV KAM E++HESR EAKGL A+ KNV RAAPPTRLVFYED Sbjct: 123 WINFIILLISIGVDGFVLHKAMKEIVHESRSEAKGLAIVAAAFKNVGRAAPPTRLVFYED 182 Query: 182 LVATSGGALAMLAVLVTAFTSFKLLDGVSSILIAFMMIGVAFRVGYDNMVGLIGVAAPPE 241 LVAT+G LA++AV+VT+ TSF LLDGVS+I+I +M+ VAFRVGYDNMVGLIGVAAP E Sbjct: 183 LVATTGAFLALIAVVVTSLTSFTLLDGVSTIMIGLLMVAVAFRVGYDNMVGLIGVAAPRE 242 Query: 242 IEERVARIIFDEPQVTDIYQMRILQEGRYYHVEGLIELKKGMTLADADDIKFKVRDKLLA 301 +EE+VA++IF +VTDIY MRILQEGRYYHVEGLIELK GMTLA+ADDIKFKVRD LL Sbjct: 243 VEEKVAQLIFSHGEVTDIYSMRILQEGRYYHVEGLIELKPGMTLAEADDIKFKVRDTLLL 302 Query: 302 DPHISDVTLGILEDNGIRNWESQTDG 327 DP I+DVT+GI+EDNG+RNW+ Q G Sbjct: 303 DPAIADVTIGIIEDNGVRNWQPQEAG 328 >C0Z4X9.1 C0Z4X9_BREBN Conserved hypothetical membrane protein Length = 325 Score = 434 bits (1116), Expect = e-120, Method: Compositional matrix adjust. Identities = 202/316 (63%), Positives = 260/316 (82%), Gaps = 1/316 (0%) Query: 7 SLGSLIRKGNKSSGSAAIGNTCIAVVKAVAFALTGSGSMFATMMHSIADAVNQLFVFTGS 66 S + ++KGN SS +AA+GNT +A+ K A +GSG+MFA+ MHS+ADAVNQ FVF GS Sbjct: 3 SFWATLKKGNTSSATAALGNTGLAIAKGFAAVYSGSGAMFASAMHSVADAVNQFFVFFGS 62 Query: 67 VLAEKRPTRRFPDGFGRVINLFCMVAVIVVTIMAYETMLEGFHLLKHPAEESGGYWINVI 126 VLAEK+PT RFP GFGRVINLFCMVAVIVVTIMAYET+++GFHL+ P + S +W+N I Sbjct: 63 VLAEKKPTPRFPSGFGRVINLFCMVAVIVVTIMAYETIIKGFHLISEPVKSSH-FWLNFI 121 Query: 127 VLLLSIGADGFVWVKAMNEVLHESRIEAKGLRKFTASLKNVKRAAPPTRLVFYEDLVATS 186 +L L++ DG+V VKAM E++HE+R+EAKG A+ +NV RAAPPTRLVFYED+VAT Sbjct: 122 ILFLAVIVDGYVLVKAMFEIVHEARVEAKGFAVIPAAFRNVGRAAPPTRLVFYEDIVATL 181 Query: 187 GGALAMLAVLVTAFTSFKLLDGVSSILIAFMMIGVAFRVGYDNMVGLIGVAAPPEIEERV 246 G LA++AV+VT FTSF LLDG+++ILI +M+GVAF+VGYDNMVGLIG+AAP EIE+RV Sbjct: 182 GALLALIAVIVTTFTSFALLDGIATILIGILMVGVAFKVGYDNMVGLIGIAAPKEIEDRV 241 Query: 247 ARIIFDEPQVTDIYQMRILQEGRYYHVEGLIELKKGMTLADADDIKFKVRDKLLADPHIS 306 A++IF +P VTDI ++RI+QEGR+YHVE +EL+ G++LA ADDIK+++RD LL DP IS Sbjct: 242 AKVIFADPDVTDINKLRIVQEGRFYHVESYVELRTGLSLAVADDIKYRIRDSLLTDPDIS 301 Query: 307 DVTLGILEDNGIRNWE 322 DVT+GILEDNG +W+ Sbjct: 302 DVTMGILEDNGEDDWK 317 >Q2BDX4.1 Q2BDX4_9BACI Putative uncharacterized protein Length = 338 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 182/315 (57%), Positives = 239/315 (75%), Gaps = 1/315 (0%) Query: 10 SLIRKGNKSSGSAAIGNTCIAVVKAVAFALTGSGSMFATMMHSIADAVNQLFVFTGSVLA 69 L++KGNKSSG AAIGNT + + K VA A++GSG+M AT +HS ADA+NQ FVF GS LA Sbjct: 23 QLLKKGNKSSGIAAIGNTVLTIAKGVAAAISGSGTMLATTLHSAADALNQGFVFIGSALA 82 Query: 70 EKRPTRRFPDGFGRVINLFCMVAVIVVTIMAYETMLEGFHLLKHPAEESGGYWINVIVLL 129 EK PT+RFP GFGRV+NLF +VAVIV+ IMAYET+ +G+ L++HP +ES +N+ ++L Sbjct: 83 EKEPTKRFPTGFGRVVNLFVLVAVIVIAIMAYETIHKGWELIQHP-KESTNILLNISIML 141 Query: 130 LSIGADGFVWVKAMNEVLHESRIEAKGLRKFTASLKNVKRAAPPTRLVFYEDLVATSGGA 189 L+IG DGF+ VKAM E+ HE+R EAKG T + KN A+PPTRLVFYEDL+AT G Sbjct: 142 LAIGVDGFILVKAMKEINHETRSEAKGFSIVTTAFKNNGLASPPTRLVFYEDLIATFGAL 201 Query: 190 LAMLAVLVTAFTSFKLLDGVSSILIAFMMIGVAFRVGYDNMVGLIGVAAPPEIEERVARI 249 LA++++L+ FT F LDGV +ILI ++ G+A ++GY+N +GLIGVAAP +E+RVA + Sbjct: 202 LALVSILLAHFTGFYFLDGVGTILIGLLLTGIAVKIGYENTIGLIGVAAPKIVEDRVANM 261 Query: 250 IFDEPQVTDIYQMRILQEGRYYHVEGLIELKKGMTLADADDIKFKVRDKLLADPHISDVT 309 I +P V DI MRILQEGR +HVE IEL+ G++LADADDIKF+VRD LL D I D T Sbjct: 262 ILSDPDVVDILDMRILQEGRRFHVESYIELRAGLSLADADDIKFRVRDLLLTDTDIGDAT 321 Query: 310 LGILEDNGIRNWESQ 324 LGILE + ++ W+ + Sbjct: 322 LGILETDNVQTWKDE 336 >Q2BAU4.1 Q2BAU4_9BACI Putative uncharacterized protein Length = 318 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 179/316 (56%), Positives = 242/316 (76%), Gaps = 1/316 (0%) Query: 7 SLGSLIRKGNKSSGSAAIGNTCIAVVKAVAFALTGSGSMFATMMHSIADAVNQLFVFTGS 66 SL + +++GNKSSG AA+GNT +A+ K VA A++GSG+MFAT +HS+ADA+NQ FVF GS Sbjct: 2 SLLAFLKRGNKSSGIAAVGNTALAIAKGVAAAISGSGAMFATTLHSVADALNQGFVFFGS 61 Query: 67 VLAEKRPTRRFPDGFGRVINLFCMVAVIVVTIMAYETMLEGFHLLKHPAEESGGYWINVI 126 ++EK T+RFP GFGRV+NLF ++AVIV++IMAYET+ +G+ L+ HP ES W+N+I Sbjct: 62 AISEKEATKRFPSGFGRVVNLFVLIAVIVISIMAYETIHKGWDLIVHP-HESSDLWLNII 120 Query: 127 VLLLSIGADGFVWVKAMNEVLHESRIEAKGLRKFTASLKNVKRAAPPTRLVFYEDLVATS 186 +++L+I DG V VKAM E+ HE++ AKG FT S KNV+ AAPPTRLVFYED++AT Sbjct: 121 IMILAILTDGGVLVKAMKEIAHETKSGAKGFSVFTTSFKNVRLAAPPTRLVFYEDIIATF 180 Query: 187 GGALAMLAVLVTAFTSFKLLDGVSSILIAFMMIGVAFRVGYDNMVGLIGVAAPPEIEERV 246 G LA++++++ T F LDGV +ILI F+++G+A ++GY+N +GLIGVAAP EIE+RV Sbjct: 181 GALLALISIILAHLTGFYFLDGVGTILIGFLLVGIAIKIGYENTLGLIGVAAPKEIEDRV 240 Query: 247 ARIIFDEPQVTDIYQMRILQEGRYYHVEGLIELKKGMTLADADDIKFKVRDKLLADPHIS 306 A I +P V DI MRILQEGR YH+E IELK G++LA ADDI ++VRDKL DP + Sbjct: 241 ADTILSDPDVVDIKDMRILQEGRKYHIESYIELKAGLSLAIADDIIYRVRDKLFKDPDVG 300 Query: 307 DVTLGILEDNGIRNWE 322 DV +GILE + I W+ Sbjct: 301 DVRMGILETDNITTWK 316 >B3KBA1.1 B3KBA1_9BACI Cation diffusion facilitator family transporter Length = 311 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 180/296 (60%), Positives = 234/296 (79%), Gaps = 1/296 (0%) Query: 31 VVKAVAFALTGSGSMFATMMHSIADAVNQLFVFTGSVLAEKRPTRRFPDGFGRVINLFCM 90 ++K +A +++GSG+MFA+ MHS+ADAVNQ FVF GSVLAE++PT++FP GFGRVINL CM Sbjct: 11 IIKGIAASISGSGTMFASAMHSVADAVNQGFVFVGSVLAERKPTKKFPTGFGRVINLVCM 70 Query: 91 VAVIVVTIMAYETMLEGFHLLKHPAEESGGYWINVIVLLLSIGADGFVWVKAMNEVLHES 150 VAVIVVTIMAYET+L+GF LLKHP EE+ +W+N IVL +++ DG + VKAM E++ E+ Sbjct: 71 VAVIVVTIMAYETILKGFKLLKHP-EEATNFWLNFIVLAIAVIIDGSILVKAMKEIMKET 129 Query: 151 RIEAKGLRKFTASLKNVKRAAPPTRLVFYEDLVATSGGALAMLAVLVTAFTSFKLLDGVS 210 R EA GL A+ KN RAAPPTRLVFYED+VAT G A++A++ F +F +LDG++ Sbjct: 130 RAEASGLSLLPAAFKNAGRAAPPTRLVFYEDIVATLGALFALIAIVFAHFFNFLILDGIA 189 Query: 211 SILIAFMMIGVAFRVGYDNMVGLIGVAAPPEIEERVARIIFDEPQVTDIYQMRILQEGRY 270 +ILI +M+GVAF+VGYDNMVGLIGVAAP ++EE+++ II +P V DI ++RILQEGR Sbjct: 190 TILIGCLMVGVAFKVGYDNMVGLIGVAAPKDVEEKISGIILADPDVRDINRLRILQEGRN 249 Query: 271 YHVEGLIELKKGMTLADADDIKFKVRDKLLADPHISDVTLGILEDNGIRNWESQTD 326 YHVE IELKKGMTLA+A K ++ L DP+ISDVTLGILED+GI+ W + D Sbjct: 250 YHVEAYIELKKGMTLAEAGQSKMRINALLTQDPNISDVTLGILEDDGIKLWNPRED 305 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,856,154,147 Number of extensions: 73653136 Number of successful extensions: 196878 Number of sequences better than 1.0e-05: 343 Number of HSP's gapped: 196711 Number of HSP's successfully gapped: 343 Length of query: 327 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 191 Effective length of database: 1,779,438,163 Effective search space: 339872689133 Effective search space used: 339872689133 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)