BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0045.p (137 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B7H7P0.1 B7H7P0_BACC4 Putative uncharacterized protein 194 2e-48 C3E3L1.1 C3E3L1_BACTU 3-demethylubiquinone-9 3-methyltransferase 194 2e-48 Q81DD6.1 Q81DD6_BACCR PhnB protein 192 7e-48 C2PF69.1 C2PF69_BACCE 3-demethylubiquinone-9 3-methyltransferase 192 7e-48 A9VFW6.1 A9VFW6_BACWK 3-demethylubiquinone-9 3-methyltransferase 192 9e-48 >B7H7P0.1 B7H7P0_BACC4 Putative uncharacterized protein Length = 135 Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 85/135 (62%), Positives = 108/135 (80%) Query: 1 MSDTQPGISTFLMFEGQAEEAMNFYVSLFDRSEVTSIKRYGPGEAGAEGTVMHASFTIKG 60 MS+T I+TFLMFEG+AEEAMNFY SLFD+SE+ SI RY G EGTV+HA+FT+ G Sbjct: 1 MSNTNQKITTFLMFEGKAEEAMNFYTSLFDQSEIVSISRYDENGPGKEGTVIHATFTLNG 60 Query: 61 ASFMCIDSHVKHGFSFTPSISLYVNCTSEAELDTVFEQLSQGGNVLMPLGEYPFSRKFGW 120 FMCIDS+V H F+FTP++SLYV C +E E+DTVF +L+Q G +LMPLG YPFS+KFGW Sbjct: 61 QEFMCIDSYVNHNFTFTPAMSLYVTCETEEEIDTVFHKLAQDGAILMPLGSYPFSKKFGW 120 Query: 121 VADRFGVTWQLNLPD 135 + D++GV+WQL L + Sbjct: 121 LNDKYGVSWQLTLAE 135 >C3E3L1.1 C3E3L1_BACTU 3-demethylubiquinone-9 3-methyltransferase Length = 135 Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 85/135 (62%), Positives = 108/135 (80%) Query: 1 MSDTQPGISTFLMFEGQAEEAMNFYVSLFDRSEVTSIKRYGPGEAGAEGTVMHASFTIKG 60 MS+T I+TFLMFEG+AEEAMNFY SLFD+SE+ SI RY G EGTV+HA+FT+ G Sbjct: 1 MSNTNQKITTFLMFEGKAEEAMNFYTSLFDQSEIVSISRYDENGPGKEGTVIHATFTLNG 60 Query: 61 ASFMCIDSHVKHGFSFTPSISLYVNCTSEAELDTVFEQLSQGGNVLMPLGEYPFSRKFGW 120 FMCIDS+V H F+FTP++SLYV C +E E+DTVF +L+Q G +LMPLG YPFS+KFGW Sbjct: 61 QEFMCIDSYVNHNFTFTPAMSLYVTCETEEEIDTVFHKLAQDGAILMPLGSYPFSKKFGW 120 Query: 121 VADRFGVTWQLNLPD 135 + D++GV+WQL L + Sbjct: 121 LNDKYGVSWQLTLAE 135 >Q81DD6.1 Q81DD6_BACCR PhnB protein Length = 135 Score = 192 bits (488), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 84/135 (62%), Positives = 107/135 (79%) Query: 1 MSDTQPGISTFLMFEGQAEEAMNFYVSLFDRSEVTSIKRYGPGEAGAEGTVMHASFTIKG 60 MS+ I+TFLMFEG+AEEAMNFY SLFD+SE+ SI RY G EGTV+HA+FT+ G Sbjct: 1 MSNANQKITTFLMFEGKAEEAMNFYTSLFDQSEIVSISRYDENGPGKEGTVIHATFTLNG 60 Query: 61 ASFMCIDSHVKHGFSFTPSISLYVNCTSEAELDTVFEQLSQGGNVLMPLGEYPFSRKFGW 120 FMCIDS+V H F+FTP++SLYV C +E E+DTVF +L+Q G +LMPLG YPFS+KFGW Sbjct: 61 QEFMCIDSYVNHNFTFTPAMSLYVTCETEEEIDTVFHKLAQDGAILMPLGSYPFSKKFGW 120 Query: 121 VADRFGVTWQLNLPD 135 + D++GV+WQL L + Sbjct: 121 LNDKYGVSWQLTLAE 135 >C2PF69.1 C2PF69_BACCE 3-demethylubiquinone-9 3-methyltransferase Length = 135 Score = 192 bits (488), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 86/135 (63%), Positives = 108/135 (80%) Query: 1 MSDTQPGISTFLMFEGQAEEAMNFYVSLFDRSEVTSIKRYGPGEAGAEGTVMHASFTIKG 60 MS I+TFLMFEG+AEEAMNFY SLFD+SE+ SI RY G EGTV+HA+FT+ G Sbjct: 1 MSKPNQKITTFLMFEGKAEEAMNFYTSLFDQSEIVSISRYDENGPGKEGTVIHATFTLNG 60 Query: 61 ASFMCIDSHVKHGFSFTPSISLYVNCTSEAELDTVFEQLSQGGNVLMPLGEYPFSRKFGW 120 FMCIDS+VKHGF+FTPS+SLYV C +E E++ VF +L+Q G+VLMPLG YPFS+KFGW Sbjct: 61 QEFMCIDSYVKHGFTFTPSMSLYVTCGTEEEIEAVFHKLAQDGSVLMPLGSYPFSKKFGW 120 Query: 121 VADRFGVTWQLNLPD 135 + D++GV+WQL L + Sbjct: 121 LNDKYGVSWQLTLAE 135 >A9VFW6.1 A9VFW6_BACWK 3-demethylubiquinone-9 3-methyltransferase Length = 137 Score = 192 bits (487), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 85/137 (62%), Positives = 108/137 (78%) Query: 1 MSDTQPGISTFLMFEGQAEEAMNFYVSLFDRSEVTSIKRYGPGEAGAEGTVMHASFTIKG 60 M +T I+TFLMFEG+AEEAMNFY SLF++SE+ SI RY G EGTV+HA+FT+ G Sbjct: 1 MGNTNQKITTFLMFEGKAEEAMNFYTSLFNQSEIVSISRYDENGPGKEGTVIHATFTLNG 60 Query: 61 ASFMCIDSHVKHGFSFTPSISLYVNCTSEAELDTVFEQLSQGGNVLMPLGEYPFSRKFGW 120 FMCIDS+VKH F+FTP++SLYV C +E E++TVF +L+Q G VLMPLG YPFS+KFGW Sbjct: 61 QEFMCIDSYVKHDFTFTPAMSLYVTCDTEKEIETVFNKLAQDGKVLMPLGSYPFSKKFGW 120 Query: 121 VADRFGVTWQLNLPDPE 137 + D++GV+WQL L E Sbjct: 121 LNDKYGVSWQLTLAGDE 137 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 852,987,967 Number of extensions: 31590968 Number of successful extensions: 63110 Number of sequences better than 1.0e-05: 716 Number of HSP's gapped: 62570 Number of HSP's successfully gapped: 743 Length of query: 137 Length of database: 3,060,696,203 Length adjustment: 101 Effective length of query: 36 Effective length of database: 2,109,173,688 Effective search space: 75930252768 Effective search space used: 75930252768 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)