BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0043.p (302 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZHE7.1 C0ZHE7_BREBN Putative uncharacterized protein 224 7e-57 C3BGD9.1 C3BGD9_9BACI Oligopeptide ABC transporter, solute-bindi... 185 4e-45 C2QNY1.1 C2QNY1_BACCE Oligopeptide ABC transporter, solute-bindi... 183 2e-44 B3Z352.1 B3Z352_BACCE Putative ABC transporter, substrate-bindin... 183 2e-44 Q73CY2.1 Q73CY2_BACC1 ABC transporter, substrate-binding protein... 183 2e-44 >C0ZHE7.1 C0ZHE7_BREBN Putative uncharacterized protein Length = 596 Score = 224 bits (571), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 120/262 (45%), Positives = 157/262 (59%), Gaps = 6/262 (2%) Query: 14 DTLRIIRNRRMEKLDPATVYRAFESYLIEQICSTLVIYDAKNNSFLPGLAHMWEANPEHT 73 + LRI R R +DPA V A ES+ I+QIC TLVI+D F P LA+ WE N + T Sbjct: 136 EILRIPRERAFSTIDPAFVAVAAESHFIQQICHTLVIFDLATQDFKPQLAYAWERNLDMT 195 Query: 74 SYIFYLRKRVRFHHGRFLTSKDVKETLLRLTDRQSPVSWHYRDIVSVELQGDHRIRIDLA 133 ++ FYLRK VRFHHGR LT +DV T+ RL SP W DI +E + D I L Sbjct: 196 AWTFYLRKGVRFHHGRVLTGEDVTYTVQRLIQLDSPYRWQVDDIDWIEQRNDGAITFHLR 255 Query: 134 RPNLFFLHLFSCVHMSIVPYDVDFLHQPI-GTGPYRLLDYNEKVLVLAAFDDYYAIRPLL 192 +PN FFLHL SC+ MSI+P+DV F I GTGP+R++++ E LVLAAFDDYY R +L Sbjct: 256 KPNGFFLHLVSCIGMSILPHDVLFSESAIVGTGPFRMVEFTEDRLVLAAFDDYYRERAIL 315 Query: 193 DRVEIWYVPELGYNDRTYQLPDXXXXXXXXXXXXCANLSIDYPALGCRYIMMNFRRNGWQ 252 DRVEIW VP + + YQL + S++ +GC Y+ NFR+ G Q Sbjct: 316 DRVEIWRVPGSCSSKQRYQLS-----LAEDEATEDDSKSLEVQEVGCHYLNFNFRKPGIQ 370 Query: 253 HHPLFRQMLRMLYHPEALVREL 274 H FRQ +++L P ++R+L Sbjct: 371 HDFAFRQAIKLLIDPVQMIRDL 392 >C3BGD9.1 C3BGD9_9BACI Oligopeptide ABC transporter, solute-binding protein Length = 583 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 102/264 (38%), Positives = 145/264 (54%), Gaps = 10/264 (3%) Query: 14 DTLRIIRNRRMEKLDPATVYRAFESYLIEQICSTLVIYDAKNNSFLPGLAHMWEANPEHT 73 D L+I +R++ LDPA ES+LI QI TLV Y+ P LAH WE + + Sbjct: 125 DVLKIPCSRKILPLDPAFAAVTTESHLISQIFDTLVTYNYVTEEIEPHLAHTWEISDDQL 184 Query: 74 SYIFYLRKRVRFHHGRFLTSKDVKETLLRLTDRQSPVSWHYRDIVSVELQGDHRIRIDLA 133 ++ FYLRK ++FHHG L+SKDV+ + RL QSP +W +IV +E +I L Sbjct: 185 TWTFYLRKGIQFHHGTILSSKDVQFSFERLQRVQSPYTWLTEEIVQIETPSPLQISFHLR 244 Query: 134 RPNLFFLHLFSCVHMSIVPYDVDFL-HQPIGTGPYRLLDYNEKVLVLAAFDDYYAIRPLL 192 +PNLFFLH S + ++I+P+DV H +GTGP++L Y E +VL AF +Y+ R LL Sbjct: 245 KPNLFFLHYVSSMQLAILPHDVTIQNHHYMGTGPFKLHSYYEDQVVLEAFTNYFKERALL 304 Query: 193 DRVEIWYVPELGYNDRTYQLPDXXXXXXXXXXXXCANLSIDYPALGCRYIMMNFRRNGWQ 252 DR+E+W +PE Y+LP+ + GC Y NF + G Sbjct: 305 DRIELWRIPEHAQIHTHYELPN---------TEHTKEHEVQIEETGCIYAAFNFTKPGPH 355 Query: 253 HHPLFRQMLRMLYHPEALVRELGG 276 H FR+ R LY E+++R+L G Sbjct: 356 HDIYFRKAWRQLYDVESIIRDLQG 379 >C2QNY1.1 C2QNY1_BACCE Oligopeptide ABC transporter, solute-binding protein Length = 562 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 104/264 (39%), Positives = 148/264 (56%), Gaps = 10/264 (3%) Query: 14 DTLRIIRNRRMEKLDPATVYRAFESYLIEQICSTLVIYDAKNNSFLPGLAHMWEANPEHT 73 D L+I +R++ LDPA V ES+L QI TLV+Y+ P +AH WE + + Sbjct: 132 DILKIPISRKIFPLDPAFVAVTTESHLTNQIFDTLVVYNDVTEKMEPHIAHTWELSEDGL 191 Query: 74 SYIFYLRKRVRFHHGRFLTSKDVKETLLRLTDRQSPVSWHYRDIVSVELQGDHRIRIDLA 133 ++ FYLRK V FH+ LTSKDV+ + RL + SP W +IV +E +IR LA Sbjct: 192 TWTFYLRKDVYFHNETVLTSKDVRFSFERLKEIHSPFEWLTEEIVQIETPSSLQIRFHLA 251 Query: 134 RPNLFFLHLFSCVHMSIVPYDVDFL-HQPIGTGPYRLLDYNEKVLVLAAFDDYYAIRPLL 192 +PNLFFLH S + ++I+P+DV+ H IGTGP++L Y+E +VL AF Y+ R LL Sbjct: 252 KPNLFFLHYVSSIQLAILPHDVNIQNHHYIGTGPFKLAHYSEDNIVLEAFTHYFKERALL 311 Query: 193 DRVEIWYVPELGYNDRTYQLPDXXXXXXXXXXXXCANLSIDYPALGCRYIMMNFRRNGWQ 252 DR+E W +P+ D Y+LP+ N+ I+ +GC Y NF + G Sbjct: 312 DRIEFWGIPDHVQIDADYELPNEEENERH-------NIQIE--EIGCIYAGFNFTKPGPH 362 Query: 253 HHPLFRQMLRMLYHPEALVRELGG 276 H FR+ R LY E ++R + G Sbjct: 363 HDIYFRKAWRELYDVETILRSIEG 386 >B3Z352.1 B3Z352_BACCE Putative ABC transporter, substrate-binding protein Length = 579 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 147/264 (55%), Gaps = 10/264 (3%) Query: 14 DTLRIIRNRRMEKLDPATVYRAFESYLIEQICSTLVIYDAKNNSFLPGLAHMWEANPEHT 73 D L+I +R++ LDPA V ES+L QI TLV+Y+ P +AH WE + + Sbjct: 125 DVLKIPISRKIFPLDPAFVAVTTESHLTSQIFDTLVVYNDVTEKMEPHIAHTWELSEDGL 184 Query: 74 SYIFYLRKRVRFHHGRFLTSKDVKETLLRLTDRQSPVSWHYRDIVSVELQGDHRIRIDLA 133 ++ FYLRK + FH+ LTSKDV+ + RL + SP W +IV +E +IR LA Sbjct: 185 TWTFYLRKDIHFHNETILTSKDVQFSFERLKEVHSPFEWLTEEIVQIETPSPLQIRFHLA 244 Query: 134 RPNLFFLHLFSCVHMSIVPYDVDFL-HQPIGTGPYRLLDYNEKVLVLAAFDDYYAIRPLL 192 +PNLFFLH S + ++I+P DV H IGTGP++L Y+E +VL AF Y+ R LL Sbjct: 245 KPNLFFLHYVSSIQLAILPRDVSIENHHYIGTGPFKLAHYSEDNIVLEAFTHYFKERALL 304 Query: 193 DRVEIWYVPELGYNDRTYQLPDXXXXXXXXXXXXCANLSIDYPALGCRYIMMNFRRNGWQ 252 DR+E W +P+ D Y+LP+ N+ I+ +GC Y+ NF + G Sbjct: 305 DRIEFWGIPDHVQIDADYELPNEEENERH-------NIQIE--EIGCIYVGFNFTKPGPH 355 Query: 253 HHPLFRQMLRMLYHPEALVRELGG 276 H FR+ R LY E ++R + G Sbjct: 356 HDMYFRKAWRELYDVETILRSIEG 379 >Q73CY2.1 Q73CY2_BACC1 ABC transporter, substrate-binding protein, putative Length = 579 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 147/264 (55%), Gaps = 10/264 (3%) Query: 14 DTLRIIRNRRMEKLDPATVYRAFESYLIEQICSTLVIYDAKNNSFLPGLAHMWEANPEHT 73 D L+I +R++ LDPA V ES+L QI TLV+Y+ P +AH WE + + Sbjct: 125 DILKIPISRKLFPLDPAFVAVTTESHLTGQIFDTLVVYNDVTEKMEPHIAHTWELSEDGL 184 Query: 74 SYIFYLRKRVRFHHGRFLTSKDVKETLLRLTDRQSPVSWHYRDIVSVELQGDHRIRIDLA 133 ++ FYLRK + FH+ LTSKDV+ + RL + SP W +IV +E +IR LA Sbjct: 185 TWTFYLRKDIHFHNETVLTSKDVQFSFERLKEVHSPFEWLTEEIVQIETPSPLQIRFHLA 244 Query: 134 RPNLFFLHLFSCVHMSIVPYDVDF-LHQPIGTGPYRLLDYNEKVLVLAAFDDYYAIRPLL 192 +PNLFFLH S + ++I+P DV H IGTGP++L Y+E +VL AF Y+ R LL Sbjct: 245 KPNLFFLHYVSSIQLAILPRDVSIQTHHYIGTGPFKLAHYSEDNIVLEAFTHYFKERALL 304 Query: 193 DRVEIWYVPELGYNDRTYQLPDXXXXXXXXXXXXCANLSIDYPALGCRYIMMNFRRNGWQ 252 DR+E W +P+ D Y+LP+ N+ I+ +GC Y NF ++G Sbjct: 305 DRIEFWGIPDHVQIDADYELPNEEKNERH-------NIQIE--EIGCIYASFNFTKSGPH 355 Query: 253 HHPLFRQMLRMLYHPEALVRELGG 276 H FR+ R LY E ++R + G Sbjct: 356 HDIYFRKAWRELYDVETILRSIEG 379 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.143 0.458 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,873,715,792 Number of extensions: 74882478 Number of successful extensions: 167687 Number of sequences better than 1.0e-05: 1459 Number of HSP's gapped: 167410 Number of HSP's successfully gapped: 1459 Length of query: 302 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 167 Effective length of database: 1,788,859,178 Effective search space: 298739482726 Effective search space used: 298739482726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)