BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0040.p (318 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z5Y8.1 C0Z5Y8_BREBN Putative transcriptional regulator 342 3e-92 A8MKC4.1 A8MKC4_ALKOO Helix-turn-helix type 11 domain protein 241 7e-62 C4EL37.1 C4EL37_STRRS Predicted transcriptional regulator, COG2378 160 2e-37 C4CJF0.1 C4CJF0_9CHLR Predicted transcriptional regulator, COG2378 157 1e-36 Q6N7J2.1 Q6N7J2_RHOPA Putative uncharacterized protein 153 3e-35 >C0Z5Y8.1 C0Z5Y8_BREBN Putative transcriptional regulator Length = 334 Score = 342 bits (877), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 162/310 (52%), Positives = 213/310 (68%) Query: 1 MRLHRXXXXXXXXESRGKMKANELAEALETSVRSIYRDIDVLAESGIPMVTTPGPGGGIS 60 MRLHR ESRGKMKA ELA ALETSVRSIYRDID L+++GIP+ T GPGGGI Sbjct: 17 MRLHRLIAILLLIESRGKMKAKELAIALETSVRSIYRDIDALSQAGIPIAATSGPGGGIY 76 Query: 61 LMEGYSVNLQKLHGEEVVNLYLTGMGIPFDAQSESGXXXXXXXXXXENTLPAAYQEDIHK 120 LMEGY+VNL++L+ ++VV+LYLTGMGI +E+G E TLP Y+ DI K Sbjct: 77 LMEGYTVNLKQLYVDDVVHLYLTGMGIHVGQDTETGHKLTSALLKLEKTLPQIYRPDIEK 136 Query: 121 AKNRFYYDNTPWWEERAELPCLEHLRSAVWRCRLLRIQYRKVNGELTSRILHPYGMIVKQ 180 AK RFY+D TPWWEER +P LE LR+AVWR + I YRK++G +SR + PYG++VK+ Sbjct: 137 AKKRFYFDETPWWEERVVIPNLEVLRAAVWRSSKVVIAYRKMDGSSSSRTVCPYGLVVKK 196 Query: 181 GEWYLAAFCEAAEEVRTFKCERIVSVEVMDGQYTVPADFSLEEYWLRGNDVFKQNCKQDE 240 EWYL A+CE A+EVRTFKCERI SV V + + +P FSL YW FKQ C++ E Sbjct: 197 TEWYLVAYCENAQEVRTFKCERIPSVHVREEAFEIPESFSLAGYWTNQEAAFKQACREVE 256 Query: 241 FYPVVVRAAKERQQGLRQYEIAEVKETEEYLEFTLNLYSYESACRQVMNLLNDAEIMQPP 300 ++PVV+R E+ + E+ + EY + T+NLYSYE ACR +++++ E+M+P Sbjct: 257 YFPVVIRLHAEKPAVRERLEVISAVQQGEYKQLTVNLYSYERACRDILDMIGHMEVMEPA 316 Query: 301 EIREYIKEQL 310 E+R + KE+L Sbjct: 317 ELRAFAKERL 326 >A8MKC4.1 A8MKC4_ALKOO Helix-turn-helix type 11 domain protein Length = 323 Score = 241 bits (615), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 117/320 (36%), Positives = 187/320 (58%), Gaps = 3/320 (0%) Query: 1 MRLHRXXXXXXXXESRGKMKANELAEALETSVRSIYRDIDVLAESGIPMVTTPGPGGGIS 60 MRLHR +SRG MKA +LA LETS R+IYRDID+L ESGIP+ + GP GG + Sbjct: 1 MRLHRLLGIIMLIDSRGTMKAKDLARILETSERTIYRDIDLLCESGIPIFSVSGPNGGYA 60 Query: 61 LMEGYSVNLQKLHGEEVVNLYLTGMGIPFDAQSESGXXXXXXXXXXENTLPAAYQEDIHK 120 ME Y +N L + VNL L+ MGI + +E EN++ ++E+I K Sbjct: 61 FMEDYRINANVLESGDAVNLLLSSMGIRPEEDTEMAQQLRNAIIKLENSISVEHKEEIIK 120 Query: 121 AKNRFYYDNTPWWEERAELPCLEHLRSAVWRCRLLRIQYRKVNGELTSRILHPYGMIVKQ 180 AK RF+ D+ PWW +R ++ ++ +V + L++ YRK GE++ RI+ PYG IVK Sbjct: 121 AKERFFIDSDPWWGKRIPNKNVDLIKKSVLDLKKLKVYYRKYAGEISERIIRPYGAIVKN 180 Query: 181 GEWYLAAFCEAAEEVRTFKCERIVSVEVMDGQYTVPADFSLEEYWLRGNDVFKQNCK--- 237 EWYLAA+CE ++R FKC RI S+EV+D + + +FSLE++W F ++ Sbjct: 181 SEWYLAAYCETKNDIRVFKCSRIESIEVLDESFLMDDNFSLEQFWKDSKQQFIKHTSTKT 240 Query: 238 QDEFYPVVVRAAKERQQGLRQYEIAEVKETEEYLEFTLNLYSYESACRQVMNLLNDAEIM 297 + YPV ++ +E++ L+ + + + + +++ S+++AC + L + EI+ Sbjct: 241 KPSMYPVKIKFFEEKKDKLQGFLVLSSSKVHNDWVYEIDMISFQTACNVIFPLSDRMEIL 300 Query: 298 QPPEIREYIKEQLVLLQKVY 317 +P E+++YI E+ + +Y Sbjct: 301 EPLELKKYIIEKCKKILNLY 320 >C4EL37.1 C4EL37_STRRS Predicted transcriptional regulator, COG2378 Length = 330 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 99/327 (30%), Positives = 154/327 (47%), Gaps = 15/327 (4%) Query: 1 MRLHRXXXXXXXXESRGKMKANELAEALETSVRSIYRDIDVLAESGIPMVTTPGPGGGIS 60 MR R ++RG+M A EL+E LE SVR++YRD++ L+ +G+P+ GP GG Sbjct: 4 MRASRLLSLLLLLQTRGRMTATELSEELEVSVRTVYRDVEALSSAGVPVYADRGPAGGYR 63 Query: 61 LMEGYSVNLQKLHGEEVVNLYLTGMGIPFDAQSESGXXXXXXXXXXENTLPAAYQEDIHK 120 L++GY L L EE +L+L G+ P A+ G LP + + Sbjct: 64 LLDGYRTRLNGLTAEEASSLFLAGLPGP-AAELGLGEVAANAELKLLAALPPEPRFHASR 122 Query: 121 AKNRFYYDNTPWWEERAELPCLEHLRSAVWRCRLLRIQYRKVNGELTSRILHPYGMIVKQ 180 + RF+ D W+ E P L + AVW R LR+ YR+ R+ HPYG+++K Sbjct: 123 MRERFHLDVPGWYRGADEAPFLGEVSEAVWDQRPLRMTYRRWGPRDVERLAHPYGLVLKG 182 Query: 181 GEWYLAAFCEAAEEVRTFKCERIVSVEVMDGQYTVPADFSLEEYWLRGNDVFKQNCKQDE 240 G WY+ A E RT++ RI++ E+ +G++ P DF L YW R F+ E Sbjct: 183 GSWYMVAAVGGGEP-RTYRVSRIIAAEIAEGRFERPGDFELAAYWERYAADFRARMYTAE 241 Query: 241 FYPVVVRAAKERQQGLRQYEIAEVKET----------EEYLEFTLNLYSYESACRQVMNL 290 +VR A + R A+V + ++ L + S A ++ L Sbjct: 242 ---ALVRVAPGIEAMFRYTVGADVADAALAEAGPPDDRGWVVVRLPIESVRHAHWLLLRL 298 Query: 291 LNDAEIMQPPEIREYIKEQLVLLQKVY 317 D EI++P E+R + + L +Y Sbjct: 299 GADIEILEPAELRAQMAATVAELGGLY 325 >C4CJF0.1 C4CJF0_9CHLR Predicted transcriptional regulator, COG2378 Length = 324 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 102/327 (31%), Positives = 163/327 (49%), Gaps = 17/327 (5%) Query: 1 MRLHRXXXXXXXXESRGKMKANELAEALETSVRSIYRDIDVLAESGIPMVTTPGPGGGIS 60 MR R ++RG+M A ELA+ALE SVR++YRD + LA +G+P+ GP GG Sbjct: 1 MRASRLLSLLLLLQTRGRMTARELADALEVSVRTVYRDTEALAAAGVPIYADRGPAGGYQ 60 Query: 61 LMEGYSVNLQKLHGEEVVNLYLTGMGIPFDAQSESGXXXXXXXXXXENTLPAAYQEDIHK 120 L++GY L L +E L+L G+ P A+ G E LPA + + Sbjct: 61 LLDGYRTRLTGLTPDEAEALFLAGVPGP-AAELGLGTVLATAQLKLEAALPAELRARAAR 119 Query: 121 AKNRFYYDNTPWWEERAELPCLEHLRSAVWRCRLLRIQYRKVNGELTSRILHPYGMIVKQ 180 + RFY D W+ E + P L + AVW R + ++YR+ GE+T R L P G+++K Sbjct: 120 IRERFYLDAPGWFHEEEQNPFLGAVAEAVWEQRPIWVRYRRWGGEVT-RTLEPLGLVLKA 178 Query: 181 GEWYLAAFCEAAEEVRTFKCERIVSVEVMDGQYTVPADFSLEEYWLRGNDVFKQNCKQDE 240 G WYL A +A + RT++ R++ +E+ DG++ P F L EYW ++ F +D Sbjct: 179 GVWYLVA--QAGGQPRTYRVSRMLELELQDGRFERPEGFDLAEYWRSWSEGFADRLYRDR 236 Query: 241 FYPVVVRAAKER--------QQGLRQ--YEIAEVKETEEYLEFTLNLYSYESACRQVMNL 290 VR + QG+ + E A + +++ + + S E A ++ L Sbjct: 237 ---ATVRLSPRGVVLLPYLLGQGVARMALEAAGDPDATGWVQVEIPIESVEHAVPALLQL 293 Query: 291 LNDAEIMQPPEIREYIKEQLVLLQKVY 317 DAE++ P +R + + L ++Y Sbjct: 294 GADAEVLAPQSLRARMAMTVGALARLY 320 >Q6N7J2.1 Q6N7J2_RHOPA Putative uncharacterized protein Length = 331 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 99/316 (31%), Positives = 155/316 (49%), Gaps = 13/316 (4%) Query: 1 MRLHRXXXXXXXXESRGKMKANELAEALETSVRSIYRDIDVLAESGIPMVTTPGPGGGIS 60 MR R +++G++ A ELAEA E SVR+IYRDID LA SG+P+ G GG Sbjct: 6 MRASRMLSILTTLQAKGRVTAPELAEACEVSVRTIYRDIDALAASGVPVYADRGAEGGYR 65 Query: 61 LMEGYSVNLQKLHGEEVVNLYLTGMGIPFDAQSESGXXXXXXXXXXENTLPAAYQEDIHK 120 L++GY V L L E L+L G+ P A LPA +ED + Sbjct: 66 LLDGYRVRLNGLSQSEAGALFLAGLPGPAAALGLDAAMIAAQNKLMA-ALPANVREDAGR 124 Query: 121 AKNRFYYDNTPWWEERAELPCLEHLRSAVWRCRLLRIQYRKVNGELTSRILHPYGMIVKQ 180 + RFY D W+ E E L + +AV R L++I+Y G+ R+ P G+++K Sbjct: 125 MQERFYLDAPGWFGETEEPKHLRAVAAAVLRGTLIKIRYESWRGQKRRRV-APLGLVLKG 183 Query: 181 GEWYLAAFCEAAEEVRTFKCERIVSVEVMDGQYTVPADFSLEEYW----LRGNDVFKQNC 236 G WYLA + + VRT++ R++ +D ++T PADF L YW LR N Sbjct: 184 GSWYLAGQVDGS--VRTYRIARVLDCTPLDDRFTRPADFDLAAYWQSATLRMEAELHPNV 241 Query: 237 KQDEFYPVVVRAAKERQQGL--RQYEIAEVKETEEY--LEFTLNLYSYESACRQVMNLLN 292 P+ V+ Q + E+ ++ + + + + + S+ +A +++ L Sbjct: 242 ATVRLSPLGVKLLNALSQPYVRSRTELDDIADADGWRVAKIPVGTTSWHAAA-ELLRLGP 300 Query: 293 DAEIMQPPEIREYIKE 308 +AE+++P E+R I E Sbjct: 301 EAEVLEPAELRTTIAE 316 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,756,880,851 Number of extensions: 69160973 Number of successful extensions: 164765 Number of sequences better than 1.0e-05: 554 Number of HSP's gapped: 164270 Number of HSP's successfully gapped: 556 Length of query: 318 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 183 Effective length of database: 1,788,859,178 Effective search space: 327361229574 Effective search space used: 327361229574 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)