BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0039.p (312 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z5Y7.1 C0Z5Y7_BREBN Putative uncharacterized protein 321 5e-86 A3ZSM9.1 A3ZSM9_9PLAN Probable oxidoreductase (Fragment) 83 4e-14 A6CAV5.1 A6CAV5_9PLAN Probable oxidoreductase 78 8e-13 B1D5C8.1 B1D5C8_9BACL Oxidoreductase domain protein 78 1e-12 Q8Y3N5.1 Q8Y3N5_LISMO Lmo2800 protein 77 2e-12 >C0Z5Y7.1 C0Z5Y7_BREBN Putative uncharacterized protein Length = 312 Score = 321 bits (823), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 164/312 (52%), Positives = 206/312 (66%), Gaps = 4/312 (1%) Query: 1 MNIGILGTGFGAYHASLLAKMEGVTRIVIFGRNEAKLGKLKEELGVXXXXXXXXXXXXXX 60 MNI +LGTGFGAYHA LL KM+GV R+V+FGRNE+KL KL+EEL V Sbjct: 1 MNIAVLGTGFGAYHAHLLKKMDGVDRVVVFGRNESKLQKLQEELHVEITDHIDEIMRDPT 60 Query: 61 XXXXXXXXXSHLHSQYAIQALKAGKHVFCETPVCLSRADALALRQAEERYGQRIMVNQFI 120 S LH Q+A++AL+ GKHVFCETPVC + DA A++ A +R G++++VNQFI Sbjct: 61 IDVVDICLPSQLHRQFAVEALENGKHVFCETPVCYTLDDAQAMKHARDRSGKKLLVNQFI 120 Query: 121 KFDHAYTRLYESVNSGQYGKLLHVTLKRETAPLWGDLGLSKIAANLMIHELDMVTWLLGN 180 KFD AY L + +YG+LL ++LKRETAPLWGDLGLS I NLMIHELD VTWL G Sbjct: 121 KFDPAYAYLRSAQTENKYGQLLSLSLKRETAPLWGDLGLSSITTNLMIHELDFVTWLFGR 180 Query: 181 PPISSIWGSSSKD-GQALVHADFDTPQFSAEILVSSQMPEAYPFTVGYEAYFEQAKLVFH 239 S WG+ S D Q++V + F P AEI+ SSQMP +YPFTVGYEAYFE+AKLVF Sbjct: 181 NASMSAWGAESLDKKQSIVRSCFCYPDAYAEIVASSQMPTSYPFTVGYEAYFEKAKLVFQ 240 Query: 240 EVDYPDGKVEATLYEYGXXXXXXXEIVLDQGNPYEKSLRYALQSFTDGTPSIISLEHXXX 299 E D G+ E+ L+EY E+VL NPYE+SLR+A+Q FTD T SII ++H Sbjct: 241 EAD-SHGQTESFLWEY--TSSGKNELVLQPVNPYEESLRHAIQCFTDHTQSIIDVDHAVE 297 Query: 300 XXXXXFEITRKL 311 + ++L Sbjct: 298 SLELALALQKQL 309 >A3ZSM9.1 A3ZSM9_9PLAN Probable oxidoreductase (Fragment) Length = 381 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 106/232 (45%), Gaps = 11/232 (4%) Query: 72 LHSQYAIQALKAGKHVFCETPVCLSRADALALRQAEERYGQRIMVNQFIKFDHAYTRLYE 131 +H+ + IQA +AGKHV E P+ +S ADA + +A ++ G+ +M + F Y + Sbjct: 122 IHADFTIQAFEAGKHVLVEKPIAVSAADAKRMVKASQKSGKLLMTAHSLPFFPEYNFALK 181 Query: 132 SVNSGQYGKLLHVTLKRETA-PLWGD--LGLSKIAA---NLMIHELDMVTWLLGNPPISS 185 + SGQYGKLL + KR + P W D K+ +L IH+ + L G P + Sbjct: 182 AARSGQYGKLLGGSFKRSISDPTWVDGFWDAEKVGGPMVDLQIHDSHWIRLLFGMPTAVT 241 Query: 186 IWGSSSKDGQALVHADFDTPQFSAEILVSSQMPE--AYPFTVGYEAYFEQAKLVFHEVDY 243 G D V + F+ S + +++ + + + F G+E +FE+A L+F Sbjct: 242 SQGRMRGDVVEYVSSQFEFADRSLVVNLNAGVIDQPSRSFAHGFEIHFEKATLLFDFCVI 301 Query: 244 PDGKVEATLYEYGXXXXXXXEIVLDQGNPYE---KSLRYALQSFTDGTPSII 292 D V + + L G+P E ++ A S GTPS I Sbjct: 302 DDQPVLSMPLTVIPKKGKSKQPKLAGGDPVEAFIAEMKEAATSIETGTPSDI 353 >A6CAV5.1 A6CAV5_9PLAN Probable oxidoreductase Length = 353 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 8/177 (4%) Query: 70 SHLHSQYAIQALKAGKHVFCETPVCLSRADALALRQAEERYGQRIMVNQFIKFDHAYTRL 129 + +H Q A+ +++AGKH E P+ + A + +A E+ G + MV Q + F + Sbjct: 86 TQMHEQVALDSIRAGKHTLVEKPIAIDLKAANKMVKAAEKAGVQFMVAQVLPFFPEFQFA 145 Query: 130 YESVNSGQYGKLLHVTLKRETA-PLWGD-----LGLSKIAANLMIHELDMVTWLLGNPPI 183 E V S +YGKLL +R A P W + L +L IH+ +++ + G P Sbjct: 146 VECVRSNKYGKLLAAHFRRVMAPPKWSENIEDFQKLGGWGIDLHIHDNHLISLMCGVPTK 205 Query: 184 SSIWGSSSKDGQALVHA--DFDTPQFSAEILVSSQMPEAYPFTVGYEAYFEQAKLVF 238 + G +K VH D+D P + + F GYE YFE A ++F Sbjct: 206 VTSRGIENKGFINHVHTVYDYDDPNLAVSCVSGGIATRGLEFAHGYELYFEDATVLF 262 >B1D5C8.1 B1D5C8_9BACL Oxidoreductase domain protein Length = 340 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/235 (25%), Positives = 106/235 (45%), Gaps = 31/235 (13%) Query: 70 SHLHSQYAIQALKAGKHVFCETPVCLSRADALALRQAEERYGQRIMVNQFIKFDHAYTRL 129 + LH Q L +G HV CE P+ ++ + + A E G+++M+ Q ++F AY L Sbjct: 89 TFLHRDVTTQCLSSGVHVLCEKPMAMNAEECDVMIAAAEASGKQLMIGQCLRFWPAYVYL 148 Query: 130 YESVNSGQYGKLLHVTLKRETA-PLWGDLGLSKIAA-----NLMIHELDMVTWLLGNPPI 183 E V+SG++G + R P WG L ++ +H+ D+V WL G P Sbjct: 149 RELVSSGKFGNVTSAYFYRGGGTPSWGPWVLVNEKGGGALLDMHVHDTDVVNWLFGKPEA 208 Query: 184 SSIWGSS--SKDGQALVHADFDTPQFSAEILVSSQMPEA----YPFTVGYEAYFEQAKLV 237 S +G + + G +V + +++ +VS+Q+ + F +GY+ FE + Sbjct: 209 VSCYGRNVIAGSGYDIVSTHY---RYADNKIVSAQVDWTLNGDFGFEMGYKVNFEHGNVQ 265 Query: 238 FHEVDY---PDGKVEATLYEYGXXXXXXXEIVLDQGNPYEKSLRYALQSFTDGTP 289 F P+ + T+ E+ DQG Y++ +Y +++ G P Sbjct: 266 FDGASVKMNPNDEAGFTV-----------ELPADQGYYYQQ--KYFIEALIQGLP 307 >Q8Y3N5.1 Q8Y3N5_LISMO Lmo2800 protein Length = 333 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/195 (21%), Positives = 90/195 (46%), Gaps = 5/195 (2%) Query: 1 MNIGILGTG-FGAYHASLLAKMEGVTRIVIFGRNEAKLGKLKEELGVXXXXXXXXXXXXX 59 + +G++G G G YHA + K+ V + I N+ + ++ E+ Sbjct: 5 IKVGVIGVGQMGQYHAEIYQKLPQVELVAICEYNDERRAEMAEKFQCKAYKDYHELLANT 64 Query: 60 XXXXXXXXXXSHLHSQYAIQALKAGKHVFCETPVCLSRADALALRQAEERYGQRIMVNQF 119 ++H +A+K KH+ E P+ D A+ + + Y + V Sbjct: 65 EIEAVSIVLPDNMHRDCVEEAVKYKKHILLEKPLAKELEDGKAMYELTKDYDKVFTVGFL 124 Query: 120 IKFDHAYTRLYESVNSGQYGKLLHVTLKRETAPLWGD---LGLSKIAANLMIHELDMVTW 176 ++FD + + + +++G+ G ++H+ +R +P+ G +G S ++ ++MIH++D + W Sbjct: 125 LRFDPRFNMIKQRLDNGELGDIIHLYCRR-NSPITGPKRYIGASDLSMHVMIHDIDYINW 183 Query: 177 LLGNPPISSIWGSSS 191 + + P+ I S S Sbjct: 184 YMDSEPVKVIAKSRS 198 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,643,582,132 Number of extensions: 61541208 Number of successful extensions: 133871 Number of sequences better than 1.0e-05: 408 Number of HSP's gapped: 134278 Number of HSP's successfully gapped: 408 Length of query: 312 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 177 Effective length of database: 1,788,859,178 Effective search space: 316628074506 Effective search space used: 316628074506 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)