BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0035.p (511 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1FM17.1 C1FM17_CLOBJ Sensor histidine kinase EC=2.7.3.- 318 9e-85 B1QI04.1 B1QI04_CLOBO Sensor protein EC=2.7.13.3 318 9e-85 B1Q9N1.1 B1Q9N1_CLOBO Sensor protein EC=2.7.13.3 318 9e-85 A5I773.1 A5I773_CLOBH Sensor protein EC=2.7.13.3 317 1e-84 A7FYU4.1 A7FYU4_CLOB1 Sensor protein EC=2.7.13.3 316 3e-84 >C1FM17.1 C1FM17_CLOBJ Sensor histidine kinase EC=2.7.3.- Length = 448 Score = 318 bits (815), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 160/360 (44%), Positives = 247/360 (68%), Gaps = 8/360 (2%) Query: 150 AGGFVIGNPEEEQVYNIIFFTPKEGINIS-YNNSSGTKLQETRKLGNGLYLVAAS-TITY 207 + G ++ + EE +Y I T KEG+ + Y+++ ++ET+K+ + LY+V + ++ Sbjct: 95 SNGEILSSNNEENMYTIRKSTIKEGLELKRYDDNIIINIRETKKISDNLYIVINNDSVID 154 Query: 208 TENPVSAXXXXXXXXXXXXXXXXXIRYMRTLEQGTHTLYATDFEARIPLKYNNELSTMAA 267 + + ++Y+ ++++G + LY++DFE +IPLKYNNEL+++A Sbjct: 155 GDFIIMCTGLFAFMIIFAILAKGRLKYIISIKKGVNKLYSSDFEDKIPLKYNNELTSLAI 214 Query: 268 ALNDMAEQIVVSRSKEKDFLLNISHDLRTPLTSIMGFLSLLKEKSYDSEPEKERYIEVLE 327 ALNDM +I ++ EK+FLLNISHDLRTPLTSI+GFL+LLK+K YD+E E+E YI +E Sbjct: 215 ALNDMGGKIKENKENEKEFLLNISHDLRTPLTSILGFLNLLKQKKYDTEEEREGYINTIE 274 Query: 328 ERTGYLKKLIDEFFEISQLKWKPAVLNKSRVNMQELLRQVVEGYHPQSRDRRIETVLLLP 387 E++ YLK LIDEFF+ S LKWK LNK +N+QE+LRQ+ +G++PQ ++ +I + P Sbjct: 275 EQSLYLKTLIDEFFQFSTLKWKNVKLNKENINLQEILRQISDGFYPQLKENKISVSMNFP 334 Query: 388 DQSVHVEIDADLFVRVLENLLSNAFKYSRADTELTIRLREPVAENRRQCLLRLEMWSTPA 447 ++S++ E+D D F+RVLEN++SNA KYS TE+++ L EN+ + + +E W+TP Sbjct: 335 EKSLYKEVDVDKFMRVLENVISNAIKYSHKGTEISLNL----YENKDKIV--MEFWNTPI 388 Query: 448 QAMENGELNRLFDRFYKGDSSRTGEGAGLGLSIAAEIIRLHGGRLDAQIEGERLGMMIEL 507 +A++ EL+ LF RFYK D SR +GAGLGLSIA E ++LHGG L A ++ ERLG++I+L Sbjct: 389 EALKEDELDFLFKRFYKKDLSRGNKGAGLGLSIALEAVKLHGGELYAVMKNERLGIIIKL 448 >B1QI04.1 B1QI04_CLOBO Sensor protein EC=2.7.13.3 Length = 448 Score = 318 bits (815), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 160/360 (44%), Positives = 247/360 (68%), Gaps = 8/360 (2%) Query: 150 AGGFVIGNPEEEQVYNIIFFTPKEGINIS-YNNSSGTKLQETRKLGNGLYLVAAS-TITY 207 + G ++ + EE +Y I T KEG+ + Y+++ ++ET+K+ + LY+V + ++ Sbjct: 95 SNGEILSSNNEENMYTIRKSTIKEGLELKRYDDNIIINIRETKKISDNLYIVINNDSVID 154 Query: 208 TENPVSAXXXXXXXXXXXXXXXXXIRYMRTLEQGTHTLYATDFEARIPLKYNNELSTMAA 267 + + ++Y+ ++++G + LY++DFE +IPLKYNNEL+++A Sbjct: 155 GDFIIMCTGLFAFMIIFAILAKGRLKYIISIKKGVNKLYSSDFEDKIPLKYNNELTSLAI 214 Query: 268 ALNDMAEQIVVSRSKEKDFLLNISHDLRTPLTSIMGFLSLLKEKSYDSEPEKERYIEVLE 327 ALNDM +I ++ EK+FLLNISHDLRTPLTSI+GFL+LLK+K YD+E E+E YI +E Sbjct: 215 ALNDMGGKIKENKENEKEFLLNISHDLRTPLTSILGFLNLLKQKKYDTEEEREGYINTIE 274 Query: 328 ERTGYLKKLIDEFFEISQLKWKPAVLNKSRVNMQELLRQVVEGYHPQSRDRRIETVLLLP 387 E++ YLK LIDEFF+ S LKWK LNK +N+QE+LRQ+ +G++PQ ++ +I + P Sbjct: 275 EQSLYLKTLIDEFFQFSTLKWKNVKLNKENINLQEILRQISDGFYPQLKENKISVSMNFP 334 Query: 388 DQSVHVEIDADLFVRVLENLLSNAFKYSRADTELTIRLREPVAENRRQCLLRLEMWSTPA 447 ++S++ E+D D F+RVLEN++SNA KYS TE+++ L EN+ + + +E W+TP Sbjct: 335 EKSLYKEVDVDKFMRVLENVISNAIKYSHKGTEISLNL----YENKDKIV--MEFWNTPI 388 Query: 448 QAMENGELNRLFDRFYKGDSSRTGEGAGLGLSIAAEIIRLHGGRLDAQIEGERLGMMIEL 507 +A++ EL+ LF RFYK D SR +GAGLGLSIA E ++LHGG L A ++ ERLG++I+L Sbjct: 389 EALKEDELDFLFKRFYKKDLSRGNKGAGLGLSIALEAVKLHGGELYAVMKNERLGIIIKL 448 >B1Q9N1.1 B1Q9N1_CLOBO Sensor protein EC=2.7.13.3 Length = 448 Score = 318 bits (815), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 160/360 (44%), Positives = 247/360 (68%), Gaps = 8/360 (2%) Query: 150 AGGFVIGNPEEEQVYNIIFFTPKEGINIS-YNNSSGTKLQETRKLGNGLYLVAAS-TITY 207 + G ++ + EE +Y I T KEG+ + Y+++ ++ET+K+ + LY+V + ++ Sbjct: 95 SNGEILSSNNEENMYTIRKSTIKEGLELKRYDDNIIINIRETKKISDNLYIVINNDSVID 154 Query: 208 TENPVSAXXXXXXXXXXXXXXXXXIRYMRTLEQGTHTLYATDFEARIPLKYNNELSTMAA 267 + + ++Y+ ++++G + LY++DFE +IPLKYNNEL+++A Sbjct: 155 GDFIIMCTGLFAFMIIFAILAKGRLKYIISIKKGVNKLYSSDFEDKIPLKYNNELTSLAI 214 Query: 268 ALNDMAEQIVVSRSKEKDFLLNISHDLRTPLTSIMGFLSLLKEKSYDSEPEKERYIEVLE 327 ALNDM +I ++ EK+FLLNISHDLRTPLTSI+GFL+LLK+K YD+E E+E YI +E Sbjct: 215 ALNDMGGKIKENKENEKEFLLNISHDLRTPLTSILGFLNLLKQKKYDTEEEREGYINTIE 274 Query: 328 ERTGYLKKLIDEFFEISQLKWKPAVLNKSRVNMQELLRQVVEGYHPQSRDRRIETVLLLP 387 E++ YLK LIDEFF+ S LKWK LNK +N+QE+LRQ+ +G++PQ ++ +I + P Sbjct: 275 EQSLYLKTLIDEFFQFSTLKWKNVKLNKENINLQEILRQISDGFYPQLKENKISVSMNFP 334 Query: 388 DQSVHVEIDADLFVRVLENLLSNAFKYSRADTELTIRLREPVAENRRQCLLRLEMWSTPA 447 ++S++ E+D D F+RVLEN++SNA KYS TE+++ L EN+ + + +E W+TP Sbjct: 335 EKSLYKEVDVDKFMRVLENVISNAIKYSHKGTEISLNL----YENKDKIV--MEFWNTPI 388 Query: 448 QAMENGELNRLFDRFYKGDSSRTGEGAGLGLSIAAEIIRLHGGRLDAQIEGERLGMMIEL 507 +A++ EL+ LF RFYK D SR +GAGLGLSIA E ++LHGG L A ++ ERLG++I+L Sbjct: 389 EALKEDELDFLFKRFYKKDLSRGNKGAGLGLSIALEAVKLHGGELYAVMKNERLGIIIKL 448 >A5I773.1 A5I773_CLOBH Sensor protein EC=2.7.13.3 Length = 461 Score = 317 bits (813), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 185/509 (36%), Positives = 291/509 (57%), Gaps = 58/509 (11%) Query: 7 RKFKTGLVGELVLIFIXXXXXXXXXXXXXXHFL------IGSALFYPVQTDAERIMNYRE 60 RK + L EL+L+F+ L I LF D I Y + Sbjct: 3 RKLRIALTTELMLLFVISLIITIFGMMMVLGSLNISSYNINKFLFPEHFKDKVIIEEYEK 62 Query: 61 KVGNPLAAWLDARAGEAVIPRQLEQELREKFPPGYSKSFRAAXXXXXXXXXXQGELLQAN 120 VG + + + +P +++++L+++FP + +G+ L Sbjct: 63 TVGRRVDRVIKGNINQLKVPHKMDEKLKKEFPYNF-----------------RGKTL--- 102 Query: 121 SNVVIVRSGESLPGGKALHSATEYPPAPEAGGFVIGNPEEEQVYNIIFFTPKEGINIS-Y 179 V I+ S G ++ + EE +Y I T KEG+ + Y Sbjct: 103 --VYIINSN----------------------GEILSSNNEENMYTIRKSTIKEGLELKRY 138 Query: 180 NNSSGTKLQETRKLGNGLYLVAAS-TITYTENPVSAXXXXXXXXXXXXXXXXXIRYMRTL 238 +++ ++ET+K+ + LY+V + ++ + + ++Y+ ++ Sbjct: 139 DDNIIINIRETKKISDNLYIVINNDSVIDGDFIIMCTGLFAFMIIFAILAKGRLKYIISI 198 Query: 239 EQGTHTLYATDFEARIPLKYNNELSTMAAALNDMAEQIVVSRSKEKDFLLNISHDLRTPL 298 ++G + LY++DFE +IPLKYNNEL+++A ALNDM +I ++ EK+FLLNISHDLRTPL Sbjct: 199 KKGVNKLYSSDFEDKIPLKYNNELTSLAIALNDMGGKIKENKENEKEFLLNISHDLRTPL 258 Query: 299 TSIMGFLSLLKEKSYDSEPEKERYIEVLEERTGYLKKLIDEFFEISQLKWKPAVLNKSRV 358 TSI+GFL+LLK+K YD E E+E YI +EE++ YLK LIDEFF+ S LKWK LNK + Sbjct: 259 TSILGFLNLLKQKKYDIEEEREGYINTIEEQSLYLKTLIDEFFQFSTLKWKNVKLNKENI 318 Query: 359 NMQELLRQVVEGYHPQSRDRRIETVLLLPDQSVHVEIDADLFVRVLENLLSNAFKYSRAD 418 N+QE+LRQ+ +G++PQ ++ +I + P++S++ E+D D F+RVLEN++SNA KYS Sbjct: 319 NLQEILRQISDGFYPQLKENKISVSMNFPEKSLYKEVDVDKFMRVLENVISNAIKYSHKG 378 Query: 419 TELTIRLREPVAENRRQCLLRLEMWSTPAQAMENGELNRLFDRFYKGDSSRTGEGAGLGL 478 TE+++ L EN+ + + +E W+TP +A++ EL+ LF RFYK D SR +GAGLGL Sbjct: 379 TEISLNL----YENKDKIV--MEFWNTPIEALKEDELDFLFKRFYKKDLSRGNKGAGLGL 432 Query: 479 SIAAEIIRLHGGRLDAQIEGERLGMMIEL 507 SIA E ++LHGG L A ++ ERLG++I+L Sbjct: 433 SIALEAVKLHGGELYAVMKNERLGIIIKL 461 >A7FYU4.1 A7FYU4_CLOB1 Sensor protein EC=2.7.13.3 Length = 448 Score = 316 bits (810), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 160/360 (44%), Positives = 246/360 (68%), Gaps = 8/360 (2%) Query: 150 AGGFVIGNPEEEQVYNIIFFTPKEGINIS-YNNSSGTKLQETRKLGNGLYLVAAS-TITY 207 + G ++ + EE +Y I T KEG+ + Y+++ ++ET+K+ + LY+V + ++ Sbjct: 95 SNGEILSSNNEENMYTIRKSTIKEGLELKRYDDNIIINIRETKKISDNLYIVINNDSVID 154 Query: 208 TENPVSAXXXXXXXXXXXXXXXXXIRYMRTLEQGTHTLYATDFEARIPLKYNNELSTMAA 267 + + ++Y+ ++++G + LY++DFE +IPLKYNNEL+++A Sbjct: 155 GDFIIMCTGLFAFMIIFAILAKGRLKYIISIKKGVNKLYSSDFEDKIPLKYNNELTSLAI 214 Query: 268 ALNDMAEQIVVSRSKEKDFLLNISHDLRTPLTSIMGFLSLLKEKSYDSEPEKERYIEVLE 327 ALNDM +I ++ EK+FLLNISHDLRTPLTSI+GFL+LLK+K YD E E+E YI +E Sbjct: 215 ALNDMGGKIKENKENEKEFLLNISHDLRTPLTSILGFLNLLKQKKYDIEEEREGYINTIE 274 Query: 328 ERTGYLKKLIDEFFEISQLKWKPAVLNKSRVNMQELLRQVVEGYHPQSRDRRIETVLLLP 387 E++ YLK LIDEFF+ S LKWK LNK +N+QE+LRQ+ +G++PQ ++ +I + P Sbjct: 275 EQSLYLKTLIDEFFQFSTLKWKNVKLNKENINLQEILRQISDGFYPQLKENKISVSMNFP 334 Query: 388 DQSVHVEIDADLFVRVLENLLSNAFKYSRADTELTIRLREPVAENRRQCLLRLEMWSTPA 447 ++S++ E+D D F+RVLEN++SNA KYS TE+++ L EN+ + + +E W+TP Sbjct: 335 EKSLYKEVDVDKFMRVLENVISNAIKYSHKGTEISLNL----YENKDKIV--MEFWNTPI 388 Query: 448 QAMENGELNRLFDRFYKGDSSRTGEGAGLGLSIAAEIIRLHGGRLDAQIEGERLGMMIEL 507 +A++ EL+ LF RFYK D SR +GAGLGLSIA E ++LHGG L A ++ ERLG++I+L Sbjct: 389 EALKEDELDFLFKRFYKKDLSRGNKGAGLGLSIALEAVKLHGGELYAVMKNERLGIIIKL 448 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,779,226,102 Number of extensions: 110561103 Number of successful extensions: 373697 Number of sequences better than 1.0e-05: 22048 Number of HSP's gapped: 338660 Number of HSP's successfully gapped: 22147 Length of query: 511 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 371 Effective length of database: 1,741,754,103 Effective search space: 646190772213 Effective search space used: 646190772213 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)