BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0402.0033.p
         (157 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1IFI7.1 B1IFI7_CLOBK DNA-binding response regulator                  176   7e-43
A5I774.1 A5I774_CLOBH Two-component response regulator                174   2e-42
A7FYU5.1 A7FYU5_CLOB1 DNA-binding response regulator                  173   5e-42
A7G8F9.1 A7G8F9_CLOBH DNA-binding response regulator                  173   5e-42
C3KUW6.1 C3KUW6_CLOB6 DNA-binding response regulator                  170   3e-41

>B1IFI7.1 B1IFI7_CLOBK DNA-binding response regulator
          Length = 230

 Score =  176 bits (445), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 80/119 (67%), Positives = 100/119 (84%)

Query: 1   MCTRILIVDDDRTIVDFLSIFLEREGYSISSCYDGVTALDYIRAEAFQLILLDIMMPAMN 60
           M  +ILIVDDD+TIV+FL IFL +EGY +   Y+G  ALD IR+E F LIL+DIMMP ++
Sbjct: 1   MSYKILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60

Query: 61  GFDLISRIREISEIPVIFLTAKDQQEDKIRGFIAGCDDYVTKPFDLTELSLRISAILKR 119
           GF+ I RIR+++ IP+IFLTAKD Q+DKI+GFI+GCDDY+TKPFDL ELSLR+SAILKR
Sbjct: 61  GFEAIKRIRKLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKR 119


>A5I774.1 A5I774_CLOBH Two-component response regulator
          Length = 230

 Score =  174 bits (442), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 80/119 (67%), Positives = 99/119 (83%)

Query: 1   MCTRILIVDDDRTIVDFLSIFLEREGYSISSCYDGVTALDYIRAEAFQLILLDIMMPAMN 60
           M  +ILIVDDD+TIV+FL IFL +EGY +   Y+G  ALD IR+E F LIL+DIMMP ++
Sbjct: 1   MSYKILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60

Query: 61  GFDLISRIREISEIPVIFLTAKDQQEDKIRGFIAGCDDYVTKPFDLTELSLRISAILKR 119
           GF+ I RIR ++ IP+IFLTAKD Q+DKI+GFI+GCDDY+TKPFDL ELSLR+SAILKR
Sbjct: 61  GFEAIKRIRRLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKR 119


>A7FYU5.1 A7FYU5_CLOB1 DNA-binding response regulator
          Length = 230

 Score =  173 bits (438), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 79/119 (66%), Positives = 98/119 (82%)

Query: 1   MCTRILIVDDDRTIVDFLSIFLEREGYSISSCYDGVTALDYIRAEAFQLILLDIMMPAMN 60
           M  +ILIVDDD+TIV+FL IFL +EGY +   Y+G  ALD IR+E F LIL+DIMMP ++
Sbjct: 1   MSYKILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60

Query: 61  GFDLISRIREISEIPVIFLTAKDQQEDKIRGFIAGCDDYVTKPFDLTELSLRISAILKR 119
           GF+ I RIR ++ IP+IFLT KD Q+DKI+GFI+GCDDY+TKPFDL ELSLR+SAILKR
Sbjct: 61  GFEAIKRIRRLTNIPIIFLTTKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKR 119


>A7G8F9.1 A7G8F9_CLOBH DNA-binding response regulator
          Length = 230

 Score =  173 bits (438), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 79/119 (66%), Positives = 98/119 (82%)

Query: 1   MCTRILIVDDDRTIVDFLSIFLEREGYSISSCYDGVTALDYIRAEAFQLILLDIMMPAMN 60
           M  +ILIVDDD+TIV+FL IFL +EGY +   Y+G  ALD IR+E F LIL+DIMMP ++
Sbjct: 1   MSYKILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60

Query: 61  GFDLISRIREISEIPVIFLTAKDQQEDKIRGFIAGCDDYVTKPFDLTELSLRISAILKR 119
           GF+ I RIR ++ IP+IFLT KD Q+DKI+GFI+GCDDY+TKPFDL ELSLR+SAILKR
Sbjct: 61  GFEAIKRIRRLTNIPIIFLTTKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKR 119


>C3KUW6.1 C3KUW6_CLOB6 DNA-binding response regulator
          Length = 230

 Score =  170 bits (431), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 78/119 (65%), Positives = 98/119 (82%)

Query: 1   MCTRILIVDDDRTIVDFLSIFLEREGYSISSCYDGVTALDYIRAEAFQLILLDIMMPAMN 60
           M  +ILIVDDD+TIV+FL IFL +EGY +   Y+G  ALD IR+E F LIL+DIMMP ++
Sbjct: 1   MSYKILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60

Query: 61  GFDLISRIREISEIPVIFLTAKDQQEDKIRGFIAGCDDYVTKPFDLTELSLRISAILKR 119
           GF  I  I++++ IP+IFLTAKD Q+DKI+GFI+GCDDY+TKPFDL ELSLR+SAILKR
Sbjct: 61  GFGAIKGIKKLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKR 119


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.327    0.142    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 704,796,812
Number of extensions: 23376145
Number of successful extensions: 153752
Number of sequences better than 1.0e-05: 31592
Number of HSP's gapped: 140754
Number of HSP's successfully gapped: 31810
Length of query: 157
Length of database: 3,060,696,203
Length adjustment: 118
Effective length of query: 39
Effective length of database: 1,949,016,433
Effective search space: 76011640887
Effective search space used: 76011640887
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 125 (52.8 bits)