BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0031.p (169 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6J6.1 B3K6J6_9BACI Putative uncharacterized protein 185 1e-45 A6CJT9.1 A6CJT9_9BACI Putative uncharacterized protein 119 1e-25 C0Z5W3.1 C0Z5W3_BREBN Putative uncharacterized protein 114 3e-24 Q2BCT0.1 Q2BCT0_9BACI Putative uncharacterized protein 106 6e-22 C0D5R1.1 C0D5R1_9CLOT Putative uncharacterized protein 104 3e-21 >B3K6J6.1 B3K6J6_9BACI Putative uncharacterized protein Length = 167 Score = 185 bits (470), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 83/159 (52%), Positives = 116/159 (72%) Query: 3 LGIELVPKEQRHIISRLMQFYLYDFTRYLELEVDRDGAFPAYPGLEAYWNSGTNKFAYLF 62 +GIELVPK ++ +I LMQ YLYDFT+YL++ V+ G F YP L+ +W K+ +L Sbjct: 9 MGIELVPKRKQAVIVNLMQLYLYDFTKYLDISVNDQGLFLPYPDLDEFWKKRERKYPFLI 68 Query: 63 TVDDNIAGFALVDRLLRSSEGQFYMTEFFVMQKYRRSGVGTWAAHRLFDMFPGDWKVSQI 122 T D AGFAL++R+ ++E +YMTEFFVMQKYRR+G+GTWAA LF+ F G WKV+Q+ Sbjct: 69 TFDQRPAGFALIERMDNAAEADYYMTEFFVMQKYRRTGLGTWAATWLFNQFQGRWKVTQV 128 Query: 123 RANTPARNFWHRVIGAYTGGEFKERFNPKQGNPSQYFST 161 +N PA+ FW +VI +YTGG ++E +P + NPSQYF++ Sbjct: 129 SSNIPAQAFWRKVIESYTGGRYEEYVDPVRFNPSQYFNS 167 >A6CJT9.1 A6CJT9_9BACI Putative uncharacterized protein Length = 158 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 61/161 (37%), Positives = 93/161 (57%), Gaps = 3/161 (1%) Query: 1 MELGIELVPKEQRHIISRLMQFYLYDFTRYLELEVDRDGAFPAYPGLEAYWNSGTNKFAY 60 ME+ + ++ +I LMQ+Y YDF+ +++ V G F YP L+ YW ++ + Sbjct: 1 MEVKLTEAALAEKEVIKNLMQYYFYDFSEFIDTAVMTKGKFGEYPYLDNYWEEPA-RYPF 59 Query: 61 LFTVDDNIAGFALVDRLLRSSEGQFYMTEFFVMQKYRRSGVGTWAAHRLFDMFPGDWKVS 120 L T + AGF LV + + + EFF+M+K+RR G+G AA ++FD F G W+VS Sbjct: 60 LLTSEGEYAGFVLVRYIEEGDTYYYSIAEFFIMKKFRRKGLGREAAFKIFDRFKGCWEVS 119 Query: 121 QIRANTPARNFWHRVIGAYTGGEFKERFNPKQGNPSQYFST 161 QI+ N PA FW + I YTGG++ ER G+ +Q FS+ Sbjct: 120 QIKRNGPANIFWRKTINEYTGGDWVER--ETDGHFAQLFSS 158 >C0Z5W3.1 C0Z5W3_BREBN Putative uncharacterized protein Length = 164 Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 60/149 (40%), Positives = 84/149 (56%), Gaps = 7/149 (4%) Query: 3 LGIELVPKEQRHIISRLMQFYLYDFTRYLELEVDRDGAFPAYPGLEAYWNSGTNKFAYLF 62 IE VP EQ+H + +L++ Y YDFT + EVD DG F Y E YW + + Sbjct: 5 FSIERVPFEQKHALKQLLELYTYDFTEFEPFEVDDDGLF-GYDYFEKYWVE-PERHPFFI 62 Query: 63 TVDDNIAGFALVDRLLRSSEGQF----YMTEFFVMQKYRRSGVGTWAAHRLFDMFPGDWK 118 V+ +AGF LV R+L S + + EFF+M++YRR G+G +H++F MFPG W+ Sbjct: 63 KVNGKLAGFVLV-RMLTSPDANLPSVHSIAEFFIMKRYRRLGIGKAVSHQIFKMFPGAWE 121 Query: 119 VSQIRANTPARNFWHRVIGAYTGGEFKER 147 V Q+ N PA FW I YT ++ER Sbjct: 122 VFQLENNMPAIGFWRASICDYTANHYEER 150 >Q2BCT0.1 Q2BCT0_9BACI Putative uncharacterized protein Length = 160 Score = 106 bits (265), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 55/147 (37%), Positives = 80/147 (54%), Gaps = 6/147 (4%) Query: 1 MELGIELVPKEQRHIISRLMQFYLYDFTRYLELEVDRDGAFPAYPGLEAYWNSGTNKFAY 60 ME I E + L+QFY+YDF+ +++ V+ +G F YP L YW F Y Sbjct: 1 MEYEIIKAGAEHEEALQNLLQFYIYDFSEFIDAYVEENGRFSEYP-LSGYWTE-EGHFPY 58 Query: 61 LFTVDDNIAGFALVDRLLRSSEGQFYMTEFFVMQKYRRSGVGTWAAHRLFDMFPGDWKVS 120 + +D+ AGF LV ++ + EFF+++KYRR G+G A +F + G W++ Sbjct: 59 IIKLDERYAGFVLVTEDSQA----LSINEFFILKKYRREGLGKQVAKDIFGLHKGRWEIF 114 Query: 121 QIRANTPARNFWHRVIGAYTGGEFKER 147 QI N PA+ FW VI YT G+F ER Sbjct: 115 QIEKNKPAQGFWRCVIDEYTNGDFTER 141 >C0D5R1.1 C0D5R1_9CLOT Putative uncharacterized protein Length = 173 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 86/142 (60%), Gaps = 3/142 (2%) Query: 1 MELGIELVPKEQRHIISRLMQFYLYDFTRYLELEVDRDGAFPAYPGLEAYWNSGTNKFAY 60 M + ++ E + + L++ YLY+F+ + + +VD +G + YP L+AYW ++ + Sbjct: 1 MNVCLKAAVPEDKETLGNLLEKYLYEFSEWEDQDVDGNGLY-GYPYLDAYWTD-EKRYPF 58 Query: 61 LFTVDDNIAGFALVDRL-LRSSEGQFYMTEFFVMQKYRRSGVGTWAAHRLFDMFPGDWKV 119 L VD +AGFALV+ + +E + + EFFVM+KYR+ GVG AA +LF FPG W++ Sbjct: 59 LILVDGKLAGFALVNCYPIVDTEADYTIAEFFVMRKYRKRGVGRQAAFQLFGRFPGKWQL 118 Query: 120 SQIRANTPARNFWHRVIGAYTG 141 N + FW+R++G YTG Sbjct: 119 KYYLENRASSVFWNRIVGEYTG 140 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.140 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,098,238,040 Number of extensions: 45694380 Number of successful extensions: 95424 Number of sequences better than 1.0e-05: 111 Number of HSP's gapped: 95358 Number of HSP's successfully gapped: 111 Length of query: 169 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 44 Effective length of database: 1,883,069,328 Effective search space: 82855050432 Effective search space used: 82855050432 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 126 (53.1 bits)