BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0030.p (367 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6J8.1 B3K6J8_9BACI Integrase family protein 338 7e-91 C0ZCR1.1 C0ZCR1_BREBN Putative recombinase 221 1e-55 B3K6J7.1 B3K6J7_9BACI Integrase domain protein SAM domain protein 201 9e-50 Q3F1E8.1 Q3F1E8_BACTI DNA integration/recombination/inversion pr... 176 5e-42 C3IUP7.1 C3IUP7_BACTU DNA integration/recombination/inversion pr... 174 2e-41 >B3K6J8.1 B3K6J8_9BACI Integrase family protein Length = 229 Score = 338 bits (866), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 171/229 (74%), Positives = 183/229 (79%), Gaps = 3/229 (1%) Query: 136 MAKVEIKRIXXXXKPKDTAAKLKGKILEDEELLEFVGYIYDGYGRDVEANKQAYYSFQLN 195 MAKVEIKRI KPKDTAAKLKGKILE+EEL +F+ YI++GYG DVE NKQA Y+ + N Sbjct: 1 MAKVEIKRIH---KPKDTAAKLKGKILEEEELQDFITYIHEGYGHDVENNKQALYAHEQN 57 Query: 196 RERDACIASLILNSGLRVSEXXXXXXXXXXXXXXXXYVYRKGNNDETFKTPVYFREQAKD 255 + RDACIASLILNSGLRVSE +VYRKGNNDETFKTPVYFR QAKD Sbjct: 58 KVRDACIASLILNSGLRVSEVVNLNLADIDLNNKMLHVYRKGNNDETFKTPVYFRAQAKD 117 Query: 256 DXXXXXXXXXXXXKTPKKEKALFIALPNGSHEGKRMTKRAIQEMIIKYAKRFGKPYLTVH 315 D K PKKEKALF+AL NG +EG+RMTKRAIQ MIIKYAKRFGKP LTVH Sbjct: 118 DLEHYLQLRQTRYKVPKKEKALFVALRNGQNEGQRMTKRAIQAMIIKYAKRFGKPSLTVH 177 Query: 316 KLRHSFATDYYLQNDIYKTKEQLGHASTETTEVYAHLTDKTMSEAIERR 364 KLRHSFATDYYLQNDIYKTKEQLGHASTETTEVYAHLTDKTMSEAIERR Sbjct: 178 KLRHSFATDYYLQNDIYKTKEQLGHASTETTEVYAHLTDKTMSEAIERR 226 >C0ZCR1.1 C0ZCR1_BREBN Putative recombinase Length = 399 Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 133/376 (35%), Positives = 207/376 (55%), Gaps = 25/376 (6%) Query: 5 LSIQKNSDRKLLDEKVLLMPWFVQQFIDFKRPDL-SPSTLLEYIRDYESFFGWLRAEGLT 63 +S+ K D L + V PW+V++FI+ K+ SPSTLL Y+RD+ FF W+ EGL+ Sbjct: 30 MSVTKQRDALQLLQTVGSYPWYVEKFIEHKKAKKNSPSTLLGYLRDFSFFFRWMMTEGLS 89 Query: 64 QAASLAEITLLDLETLHMDSIVGYRLHL---------------TTRAEGTNTRVTVSRKL 108 A+ + +I L DL L +++ Y L+L T A+ + T+SRK+ Sbjct: 90 TASDMKDIPLSDLNDLRKETVESYILYLQESHLYERSALLSNPTKSAKKEYSDRTISRKI 149 Query: 109 SALRSLFHYLSQIAEDENFYPLLKRNIMAKVEIKRIXXXXKPKDTAAKLKGKILEDEELL 168 S+L+SLFHYLS +AEDEN L RN++AK+E++ P A ++ KIL D+E+ Sbjct: 150 SSLKSLFHYLSALAEDENGESYLTRNVLAKIELE--ITELTPLARAHAIRAKILIDDEIY 207 Query: 169 EFVGYIYDGYGRDVEANKQAYYSFQLNRERDACIASLILNSGLRVSEXXXXXXXXXXXXX 228 +FV ++Y+GY + K+ Y Q NR+RD + ++IL+ G RVSE Sbjct: 208 QFVDFVYNGYLAHCDTEKKKQYHMQ-NRDRDTALIAMILSGGFRVSEIVSLDLSDIIMEK 266 Query: 229 XXXYVYRKGNNDETFKTPVYFREQAKDDXXXXXXXXXXXXKTPKKEKALFIALPNGSHEG 288 + RKG ++ +F + K+ P+ E A+F+A+ + G Sbjct: 267 NQLKLIRKGKKEDA----PFFSDWGKEHLAKYLQLRDKYNPEPQ-EDAVFLAVSPANPNG 321 Query: 289 KRMTKRAIQEMIIKYAKRFGKPYLTVHKLRHSFATDYY-LQNDIYKTKEQLGHASTETTE 347 R+ R++Q+++ KYAK FG P L+VHKLRHSFAT + L D ++ + QLGH+ ETT Sbjct: 322 HRIEVRSVQKLVKKYAKAFGIPDLSVHKLRHSFATQFLRLNPDPHQLQAQLGHSKIETTM 381 Query: 348 VYAHLTDKTMSEAIER 363 YAH+ + + +A+ R Sbjct: 382 QYAHVLEDALGKAVNR 397 >B3K6J7.1 B3K6J7_9BACI Integrase domain protein SAM domain protein Length = 149 Score = 201 bits (511), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 94/123 (76%), Positives = 110/123 (89%) Query: 5 LSIQKNSDRKLLDEKVLLMPWFVQQFIDFKRPDLSPSTLLEYIRDYESFFGWLRAEGLTQ 64 ++IQK+ DR LDEK MPWFVQQFID+K PDLSPSTLLEY+RDYE+FF WLR+EGL+Q Sbjct: 1 MNIQKDIDRARLDEKAPAMPWFVQQFIDYKLPDLSPSTLLEYVRDYETFFNWLRSEGLSQ 60 Query: 65 AASLAEITLLDLETLHMDSIVGYRLHLTTRAEGTNTRVTVSRKLSALRSLFHYLSQIAED 124 AAS ++TLL+LETL MDSI GYRL+LTTR EGTN+R+TVSRKLS+LRSLFHYLSQIAED Sbjct: 61 AASNRDVTLLELETLRMDSITGYRLYLTTRREGTNSRITVSRKLSSLRSLFHYLSQIAED 120 Query: 125 ENF 127 E+F Sbjct: 121 EDF 123 >Q3F1E8.1 Q3F1E8_BACTI DNA integration/recombination/inversion protein Length = 368 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 120/376 (31%), Positives = 189/376 (50%), Gaps = 21/376 (5%) Query: 3 KFLSIQKNSDRKLLDEKVLLMPWFVQQFIDFKRPDLSPSTLLEYIRDYESFFGWLRAEGL 62 K + +++ D + L++ P+++ ++I L+P+T+L Y D + FF W + Sbjct: 2 KIMRLERQKDSEKLEKLRPSFPYYISEYIQVSLDQLTPTTVLSYTIDIQDFFEWFWHTFV 61 Query: 63 TQAASLAEITLLDLETLHMDSIVGYRLHLTTRAEG----------TNTRVTVSRKLSALR 112 + + EI+L DLE L I YR HL R + N T+SRK+SALR Sbjct: 62 PEKPGIKEISLEDLERLIEIDISHYRSHLKYREDSHNIGNRYYKTKNKDTTISRKISALR 121 Query: 113 SLFHYLSQIAEDENFYPLLKRNIMAKVEIKRIXXXXKPKDTAAKLKGKILEDEELLEFVG 172 SLF YL++ E P L +N++ ++ + K A KLK I+ EEL EF Sbjct: 122 SLFEYLTKNTNRETGRPYLSKNVLENTKVFSTKVSVRAK--AQKLKNNIIRLEELTEFQD 179 Query: 173 YIYDGYGRDVEANKQAYYSFQLNRERDACIASLILNSGLRVSEXXXXXXXXXXXXXXXXY 232 +I +GYG++ +N + Y +++NR RDA I SL+L SG+RV E Sbjct: 180 FILEGYGKEQISNMEKAY-WKINRHRDAAIISLLLTSGIRVGELSSLRLKDVIFDSRKLV 238 Query: 233 VYRKGNNDETFKTPVYFREQAKDDXXXXXXXXXXXXKTPKKEKA-LFIALPNGSHEGKRM 291 V RK + ++ V+F +Q + K K + LF+ G + + Sbjct: 239 VERKRSKEDV----VFFSKQTLEYIVQYLEVRESHYKADDKPTSPLFVTKYAG--KINPI 292 Query: 292 TKRAIQEMIIKYAKRFGKPYLTVHKLRHSFATDYYLQN-DIYKTKEQLGHASTETTEVYA 350 +K +Q+MI+KYAK +GKP LT H LRHSF T+ + + +I +E LGH+S TT++Y Sbjct: 293 SKNTVQKMIMKYAKIYGKPELTAHILRHSFGTNVFKKTKNIRGVQEALGHSSINTTQIYT 352 Query: 351 HLTDKTMSEAIERRLE 366 H+ + E I+ E Sbjct: 353 HMFEDDERELIDEVFE 368 >C3IUP7.1 C3IUP7_BACTU DNA integration/recombination/inversion protein Length = 365 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 119/374 (31%), Positives = 188/374 (50%), Gaps = 21/374 (5%) Query: 5 LSIQKNSDRKLLDEKVLLMPWFVQQFIDFKRPDLSPSTLLEYIRDYESFFGWLRAEGLTQ 64 + +++ D + L++ P+++ ++I L+P+T+L Y D + FF W + + Sbjct: 1 MRLERQKDSEKLEKLRPSFPYYISEYIQVSLDQLTPTTVLSYTIDIQDFFEWFWHTFVPE 60 Query: 65 AASLAEITLLDLETLHMDSIVGYRLHLTTRAEG----------TNTRVTVSRKLSALRSL 114 + EI+L DLE L I YR HL R + N T+SRK+SALRSL Sbjct: 61 KPGIKEISLEDLERLIEIDISHYRSHLKYREDSHNIGNRYYKTKNKDTTISRKISALRSL 120 Query: 115 FHYLSQIAEDENFYPLLKRNIMAKVEIKRIXXXXKPKDTAAKLKGKILEDEELLEFVGYI 174 F YL++ E P L +N++ ++ + K A KLK I+ EEL EF +I Sbjct: 121 FEYLTKNTNRETGRPYLSKNVLENTKVFSTKVSVRAK--AQKLKNNIIRLEELTEFQDFI 178 Query: 175 YDGYGRDVEANKQAYYSFQLNRERDACIASLILNSGLRVSEXXXXXXXXXXXXXXXXYVY 234 +GYG++ +N + Y +++NR RDA I SL+L SG+RV E V Sbjct: 179 LEGYGKEQISNMEKAY-WKINRHRDAAIISLLLTSGIRVGELSSLRLKDVIFDSRKLVVE 237 Query: 235 RKGNNDETFKTPVYFREQAKDDXXXXXXXXXXXXKTPKKEKA-LFIALPNGSHEGKRMTK 293 RK + ++ V+F +Q + K K + LF+ G + ++K Sbjct: 238 RKRSKEDV----VFFSKQTLEYIVQYLEVRESHYKADDKPTSPLFVTKYAG--KINPISK 291 Query: 294 RAIQEMIIKYAKRFGKPYLTVHKLRHSFATDYYLQN-DIYKTKEQLGHASTETTEVYAHL 352 +Q+MI+KYAK +GKP LT H LRHSF T+ + + +I +E LGH+S TT++Y H+ Sbjct: 292 NTVQKMIMKYAKIYGKPELTAHILRHSFGTNVFKKTKNIRGVQEALGHSSINTTQIYTHM 351 Query: 353 TDKTMSEAIERRLE 366 + E I+ E Sbjct: 352 FEDDERELIDEVFE 365 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,833,776,142 Number of extensions: 67186632 Number of successful extensions: 165920 Number of sequences better than 1.0e-05: 454 Number of HSP's gapped: 166860 Number of HSP's successfully gapped: 455 Length of query: 367 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 230 Effective length of database: 1,770,017,148 Effective search space: 407103944040 Effective search space used: 407103944040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)