BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0026.p (186 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z6F9.1 C0Z6F9_BREBN Probable molybdopterin-guanine dinucleotid... 127 6e-28 B3K6J9.1 B3K6J9_9BACI Molybdopterin-guanine dinucleotide biosynt... 120 5e-26 B1DFG7.1 B1DFG7_9BACL Molybdopterin-guanine dinucleotide biosynt... 112 1e-23 Q8Y874.1 Q8Y874_LISMO Lmo1043 protein 101 3e-20 Q4ERS4.1 Q4ERS4_LISMO Molybdopterin-guanine dinucleotide biosynt... 101 4e-20 >C0Z6F9.1 C0Z6F9_BREBN Probable molybdopterin-guanine dinucleotide biosynthesis protein B Length = 171 Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 73/162 (45%), Positives = 90/162 (55%), Gaps = 9/162 (5%) Query: 16 PAVCQIVGYKNSGKTTLLCELIPLLRKKGCTVAVIKHD-GHDFEMDHEGTDTWKQRQXXX 74 P V QIVGY NSGKTTLL +LIP+L K G V VIKHD GHDFE D G DTW+ R+ Sbjct: 5 PCVLQIVGYSNSGKTTLLTKLIPILEKAGIRVGVIKHDGGHDFEWDQPGKDTWRYREAGA 64 Query: 75 XXXXXXXXXXXXXIQERTSSLAELIE--AFAGYDYVLVEGFKQEPYPKIVLLRREEDIPL 132 ++++ L+ LI+ A AG VLVEGFK+E YPK+ LLRR ED L Sbjct: 65 SLVAITSKTKTAIVEQKPQELSVLIQRLADAGAQLVLVEGFKREGYPKLALLRRPEDEEL 124 Query: 133 LEEASNIVATAFWDSIRGMELPEIPGIHRFAVNDSLEIANLL 174 L +N+V W LP F +ND +AN + Sbjct: 125 LSIVTNLVGIVGWSDKHQQGLP------FFDINDIDNVANFV 160 >B3K6J9.1 B3K6J9_9BACI Molybdopterin-guanine dinucleotide biosynthesis protein B Length = 167 Score = 120 bits (301), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 71/166 (42%), Positives = 93/166 (56%), Gaps = 13/166 (7%) Query: 18 VCQIVGYKNSGKTTLLCELIPLLRKKGCTVAVIKHDGHDFEMDHEGTDTWKQRQXXXXXX 77 V Q GYKNSGKTTL+ LIP L+++G +AVIKHDGH F+MD EGTDT+K R+ Sbjct: 3 VFQFCGYKNSGKTTLIAALIPQLKRQGMRIAVIKHDGHGFDMDREGTDTYKFREAGAEGI 62 Query: 78 XXXXXXXXXXIQERTSSLAELIEAFAGYDYVLVEGFKQEPYPKIVLLRREEDIPLLEEAS 137 ++E L LI + YD VLVEG+K P+PK+VLLR ED LL++ Sbjct: 63 AISSPGRTAMLRETELDLDTLIHMYTDYDMVLVEGYKMLPFPKLVLLRGMEDRGLLDQVE 122 Query: 138 NIVATAFWDSIRGMELPEIPGI----HRFAV-----NDSLEIANLL 174 I + L E PG+ HR AV N++ IA+L+ Sbjct: 123 EIRGIVVNPDM----LKEPPGLQEIQHRLAVPLFTWNETERIASLI 164 >B1DFG7.1 B1DFG7_9BACL Molybdopterin-guanine dinucleotide biosynthesis protein B Length = 170 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 64/157 (40%), Positives = 86/157 (54%), Gaps = 2/157 (1%) Query: 17 AVCQIVGYKNSGKTTLLCELIPLLRKKGCTVAVIKHDGHDFEMDHEGTDTWKQRQXXXXX 76 AV QI G+KN+GKTTL+C LI L +G VA +KHDGH FE + TDT K R Sbjct: 4 AVYQITGFKNAGKTTLMCRLIDYLVSQGLMVATVKHDGHSFETEPAHTDTAKHRSSGAVW 63 Query: 77 XXXXXXXXXXXIQERTSSLAELIEAFAGYDYVLVEGFKQEPYPKIVLLRREEDIPLLEEA 136 ++E+ S+L ELI ++LVEGFK E +PK+V++RR ED LL E Sbjct: 64 SAITSADRTAIVKEKPSALLELIGEAPAEAFILVEGFKTERFPKLVIVRRAEDERLLGEL 123 Query: 137 SNIVATAFWDSIRGMELPEIP-GIHRFAVNDSLEIAN 172 I A A W + ++ IP G F ++D I + Sbjct: 124 KGITAVAVWPGYK-LQKDAIPAGAVLFDIDDVQGIGD 159 >Q8Y874.1 Q8Y874_LISMO Lmo1043 protein Length = 161 Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 48/123 (39%), Positives = 73/123 (59%) Query: 17 AVCQIVGYKNSGKTTLLCELIPLLRKKGCTVAVIKHDGHDFEMDHEGTDTWKQRQXXXXX 76 A+ QI+G+KNSGKTTLL LI RK+ TV+ IKHD HDF +DH GTD++ ++ Sbjct: 3 AILQIIGFKNSGKTTLLNALIRASRKENYTVSAIKHDAHDFSVDHAGTDSYSFQESGAEA 62 Query: 77 XXXXXXXXXXXIQERTSSLAELIEAFAGYDYVLVEGFKQEPYPKIVLLRREEDIPLLEEA 136 +++ L I+ D VL+EG+K+ P+PKI+L+R + +I LL+ + Sbjct: 63 VVIANSRQYAVMEQTGIDLKTAIQKLPESDIVLIEGYKEGPFPKIILVREQAEIELLKNS 122 Query: 137 SNI 139 + Sbjct: 123 KAV 125 >Q4ERS4.1 Q4ERS4_LISMO Molybdopterin-guanine dinucleotide biosynthesis protein B Length = 161 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 48/123 (39%), Positives = 72/123 (58%) Query: 17 AVCQIVGYKNSGKTTLLCELIPLLRKKGCTVAVIKHDGHDFEMDHEGTDTWKQRQXXXXX 76 A+ QI+G+KNSGKTTLL LI RK+ TV+ IKHD HDF +DH GTD++ ++ Sbjct: 3 AILQIIGFKNSGKTTLLNALIRASRKENYTVSAIKHDAHDFSVDHAGTDSYSFQESGAEA 62 Query: 77 XXXXXXXXXXXIQERTSSLAELIEAFAGYDYVLVEGFKQEPYPKIVLLRREEDIPLLEEA 136 +++ L I+ D VL+EG+K+ P+PKI+L+R + +I LL + Sbjct: 63 VVIANSRQYAVMEQTGIDLKTAIQKLPESDIVLIEGYKEGPFPKIILVREQAEIELLNNS 122 Query: 137 SNI 139 + Sbjct: 123 KAV 125 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,046,846,827 Number of extensions: 37036620 Number of successful extensions: 131805 Number of sequences better than 1.0e-05: 611 Number of HSP's gapped: 131308 Number of HSP's successfully gapped: 611 Length of query: 186 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 58 Effective length of database: 1,854,806,283 Effective search space: 107578764414 Effective search space used: 107578764414 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)