BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0025.p (315 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6K0.1 B3K6K0_9BACI Molybdenum cofactor synthesis domain protein 399 e-109 A8VZ50.1 A8VZ50_9BACI Molybdopterin biosynthesis enzyme-like pro... 288 5e-76 C5D759.1 C5D759_9BACI Molybdenum cofactor synthesis domain protein 286 2e-75 Q9K8I5.1 Q9K8I5_BACHD Molybdopterin biosynthesis 280 1e-73 C3J1T3.1 C3J1T3_9BACI Molybdenum cofactor synthesis domain protein 280 2e-73 >B3K6K0.1 B3K6K0_9BACI Molybdenum cofactor synthesis domain protein Length = 429 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 204/311 (65%), Positives = 238/311 (76%) Query: 1 MTGAQVPAGADTVVMLEATESREEGGRLQVGIRKPQAAGKNVTPRGFELKEGELVLPAGR 60 MTGAQVP GAD VVMLEATE R E G VG ++ GKN+TP GFEL+EG+++L G Sbjct: 116 MTGAQVPEGADAVVMLEATELRVEDGVTYVGFKRSIEKGKNITPLGFELQEGDMILRRGT 175 Query: 61 MIKAGDIAVLAAFGIPLVQVIRRPRVGIFATGTELLDVHEPLVPGKIRNSNSPMLEALVR 120 I G+I+VLA FGI V V R+P VGIFATGTELLD+ EPL PGKIRNSN+ ML + +R Sbjct: 176 RIGPGEISVLATFGIHKVGVYRQPVVGIFATGTELLDITEPLEPGKIRNSNTYMLASQIR 235 Query: 121 ECGGEPVMLGAIVDDIEQARSKVQIALESYDVVITTGGVSVGDYDIMGDLIRENSGDMLF 180 E GG PV++ AI D IE AR KV+ AL YD+V+TTGGVSVGDYDIMG+L+ DMLF Sbjct: 236 EAGGVPVIMEAIPDHIELARQKVEEALRDYDIVVTTGGVSVGDYDIMGELVTSGGLDMLF 295 Query: 181 NKVTMRPGSVTTAAVRGGTLLLALSGNPGACFVGFHLFARPAILQMQGADQPFLPEWTAV 240 NKVTMRPGSVTTAAV+ G LL ALSGNPGACFVGF LF RP+I +M G +Q +L EWTA Sbjct: 296 NKVTMRPGSVTTAAVKEGKLLFALSGNPGACFVGFLLFVRPSIRKMMGMEQLYLTEWTAE 355 Query: 241 LGADYNKVNNYTRFVRARLEIHEGQLHAYPAVIDESSVMVTIKDSDCLIVIPPEERGVSA 300 LG+DY KVNN+TRFVR L+ G+L A PA +DESSVM+TIKDSDCLIVIPPE RG Sbjct: 356 LGSDYAKVNNFTRFVRGSLQAVNGKLVATPAALDESSVMITIKDSDCLIVIPPELRGAVK 415 Query: 301 GNSAKVLKLPG 311 G + +VL LPG Sbjct: 416 GQAVQVLVLPG 426 >A8VZ50.1 A8VZ50_9BACI Molybdopterin biosynthesis enzyme-like protein Length = 428 Score = 288 bits (737), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 144/312 (46%), Positives = 201/312 (64%) Query: 1 MTGAQVPAGADTVVMLEATESREEGGRLQVGIRKPQAAGKNVTPRGFELKEGELVLPAGR 60 MTG +P D VVM E +E G + I++ + G V+ +G E EGE V+ G Sbjct: 103 MTGTIMPDDCDAVVMFELANDYQENGNSYIDIKRQFSPGDFVSKQGEETSEGETVIKKGT 162 Query: 61 MIKAGDIAVLAAFGIPLVQVIRRPRVGIFATGTELLDVHEPLVPGKIRNSNSPMLEALVR 120 ++ AG IAVLA FG V VIR+PR+GIFATGTELLDV+EPL PGKIRNSN+ M+ + VR Sbjct: 163 IVTAGVIAVLATFGYEYVPVIRKPRIGIFATGTELLDVNEPLEPGKIRNSNAYMIISQVR 222 Query: 121 ECGGEPVMLGAIVDDIEQARSKVQIALESYDVVITTGGVSVGDYDIMGDLIRENSGDMLF 180 + GGEP+ G ++DD + + ALE D ++TTGGVSVGD+D + + + D+LF Sbjct: 223 KAGGEPMYFGKLMDDFDLCYDAISSALEDVDALVTTGGVSVGDFDFLPAIYDKLGADVLF 282 Query: 181 NKVTMRPGSVTTAAVRGGTLLLALSGNPGACFVGFHLFARPAILQMQGADQPFLPEWTAV 240 NK+ MRPGSVTT AV G L LSGNP ACFVGF L+ARP + + +++P+L Sbjct: 283 NKIAMRPGSVTTVAVFDGKPLFGLSGNPSACFVGFELYARPWVRRFMKSEKPYLQTIRGT 342 Query: 241 LGADYNKVNNYTRFVRARLEIHEGQLHAYPAVIDESSVMVTIKDSDCLIVIPPEERGVSA 300 L AD+ K N +TRF+R+R++ +L+A P +D+S V+ ++ SDCL+ +P RG ++ Sbjct: 343 LTADFPKPNPFTRFIRSRVKYEGNRLYAEPIGMDKSQVVTSLAYSDCLVAVPGGSRGYTS 402 Query: 301 GNSAKVLKLPGE 312 G+ +L L E Sbjct: 403 GDEVDILLLEAE 414 >C5D759.1 C5D759_9BACI Molybdenum cofactor synthesis domain protein Length = 419 Score = 286 bits (731), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 144/312 (46%), Positives = 204/312 (65%) Query: 1 MTGAQVPAGADTVVMLEATESREEGGRLQVGIRKPQAAGKNVTPRGFELKEGELVLPAGR 60 MTGAQ+P G D VVMLE + E G+ + I++P G N++ +G + K+GE+++ G Sbjct: 103 MTGAQIPDGCDAVVMLELAKQYERDGKTYMSIKRPFQPGDNISFQGEDAKKGEVLVQKGT 162 Query: 61 MIKAGDIAVLAAFGIPLVQVIRRPRVGIFATGTELLDVHEPLVPGKIRNSNSPMLEALVR 120 I G A+LA FG V+V R+PR+GIFATG+ELLDV EPLVPGKIRNSN+ M++A V Sbjct: 163 FINPGVQALLATFGYARVKVARKPRIGIFATGSELLDVSEPLVPGKIRNSNAYMIQAQVV 222 Query: 121 ECGGEPVMLGAIVDDIEQARSKVQIALESYDVVITTGGVSVGDYDIMGDLIRENSGDMLF 180 G EPV G + DD++ +++Q AL D +ITTGGVSVGDYD + + ++LF Sbjct: 223 RSGAEPVYFGKLADDVDTCFTEIQKALPQVDFLITTGGVSVGDYDYLPAIYERLGAEVLF 282 Query: 181 NKVTMRPGSVTTAAVRGGTLLLALSGNPGACFVGFHLFARPAILQMQGADQPFLPEWTAV 240 NKV MRPGSVTT A G LL LSGNP AC+VG+ LF RPA+ + +P+L + TA Sbjct: 283 NKVAMRPGSVTTVAQLNGKLLFGLSGNPSACYVGYELFVRPAVRTRLFSPKPYLRKATAT 342 Query: 241 LGADYNKVNNYTRFVRARLEIHEGQLHAYPAVIDESSVMVTIKDSDCLIVIPPEERGVSA 300 L AD+ K N +TRFVR+ + + +G+L P D+S+++ ++ ++ L+V+P RG + Sbjct: 343 LMADFPKPNPFTRFVRSYVAVEDGRLTVSPVGTDKSNIVTSLAKANALMVLPGGTRGFAK 402 Query: 301 GNSAKVLKLPGE 312 G++ V L E Sbjct: 403 GDTVDVWLLEDE 414 >Q9K8I5.1 Q9K8I5_BACHD Molybdopterin biosynthesis Length = 423 Score = 280 bits (715), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 148/312 (47%), Positives = 200/312 (64%) Query: 1 MTGAQVPAGADTVVMLEATESREEGGRLQVGIRKPQAAGKNVTPRGFELKEGELVLPAGR 60 MTGAQ+P G D VVM E T+ E G + +++ G N++ G + KEG ++ GR Sbjct: 103 MTGAQMPEGTDAVVMFELTKEISEAGESFIEVKRSFQPGDNISFCGEDAKEGTPLVEKGR 162 Query: 61 MIKAGDIAVLAAFGIPLVQVIRRPRVGIFATGTELLDVHEPLVPGKIRNSNSPMLEALVR 120 I AG A+LA FG V V + P++GIFATGTELL+V EPLVPGKIRNSN+ M+ + V+ Sbjct: 163 QIDAGIKALLATFGYAKVPVYKMPKIGIFATGTELLEVDEPLVPGKIRNSNAYMVASQVK 222 Query: 121 ECGGEPVMLGAIVDDIEQARSKVQIALESYDVVITTGGVSVGDYDIMGDLIRENSGDMLF 180 + G EPV LG +VDD +Q + AL DV++TTGGVSVGDYD + + + ++LF Sbjct: 223 QIGAEPVYLGKLVDDFDQCYDAIATALADVDVLVTTGGVSVGDYDYLPAIYEKLGANVLF 282 Query: 181 NKVTMRPGSVTTAAVRGGTLLLALSGNPGACFVGFHLFARPAILQMQGADQPFLPEWTAV 240 NK+ MRPGSVTT A R G LL LSGNP ACFVGF L RP I ++QPFL A Sbjct: 283 NKIAMRPGSVTTVAEREGQLLFGLSGNPSACFVGFELLVRPFIHVGFCSEQPFLKRVKAT 342 Query: 241 LGADYNKVNNYTRFVRARLEIHEGQLHAYPAVIDESSVMVTIKDSDCLIVIPPEERGVSA 300 LG D+ K N +TRFVR+++E +L P +D+S V+ ++ +++ L+++P RG A Sbjct: 343 LGRDFPKPNPFTRFVRSQVEFKIDRLIVKPTGLDKSGVVTSLANANGLLMLPGGTRGFQA 402 Query: 301 GNSAKVLKLPGE 312 G+ VL L GE Sbjct: 403 GDEVDVLLLKGE 414 >C3J1T3.1 C3J1T3_9BACI Molybdenum cofactor synthesis domain protein Length = 419 Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 141/309 (45%), Positives = 206/309 (66%) Query: 1 MTGAQVPAGADTVVMLEATESREEGGRLQVGIRKPQAAGKNVTPRGFELKEGELVLPAGR 60 MTGAQ+P G D VVMLE + E G+ + I++P G N++ +G + K+G+ ++ G Sbjct: 103 MTGAQIPEGCDAVVMLELAKQYERDGKTYMAIKRPFRPGDNISFQGEDAKKGQPLVEKGT 162 Query: 61 MIKAGDIAVLAAFGIPLVQVIRRPRVGIFATGTELLDVHEPLVPGKIRNSNSPMLEALVR 120 I G A+LA FG V+V ++PR+GIFATG+ELLDV EPLVPGKIRNSN+ M+EA V Sbjct: 163 RINPGVAALLATFGYAEVKVAKKPRIGIFATGSELLDVSEPLVPGKIRNSNAYMIEAQVF 222 Query: 121 ECGGEPVMLGAIVDDIEQARSKVQIALESYDVVITTGGVSVGDYDIMGDLIRENSGDMLF 180 + G EP+ LG + DD++ V+ AL+ D++ITTGGVSVGD+D + + + ++LF Sbjct: 223 KSGAEPIYLGQLADDLDACFHAVRQALDQVDMLITTGGVSVGDFDYLPAIYKRLGANVLF 282 Query: 181 NKVTMRPGSVTTAAVRGGTLLLALSGNPGACFVGFHLFARPAILQMQGADQPFLPEWTAV 240 NK+ MRPGSVTT A G LL LSGNP AC+VG+ LF RP + + +P+L + A Sbjct: 283 NKIAMRPGSVTTVAEIDGKLLFGLSGNPSACYVGYELFVRPVVRTRLFSAKPYLKKAKAT 342 Query: 241 LGADYNKVNNYTRFVRARLEIHEGQLHAYPAVIDESSVMVTIKDSDCLIVIPPEERGVSA 300 LGAD+ K N +TRFVR+R+E +G+L P +D+S+++ ++ ++ L+V+P RG + Sbjct: 343 LGADFPKPNPFTRFVRSRVEAVDGRLVVKPVGMDKSNIVTSLAFANALMVLPGGTRGFAV 402 Query: 301 GNSAKVLKL 309 G+ +V L Sbjct: 403 GDEVEVWLL 411 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.138 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,888,835,657 Number of extensions: 80355105 Number of successful extensions: 204705 Number of sequences better than 1.0e-05: 2000 Number of HSP's gapped: 200628 Number of HSP's successfully gapped: 2003 Length of query: 315 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 180 Effective length of database: 1,788,859,178 Effective search space: 321994652040 Effective search space used: 321994652040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)