BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0402.0024.p
         (102 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K6K0.1 B3K6K0_9BACI Molybdenum cofactor synthesis domain protein     96   1e-18
B4BIJ5.1 B4BIJ5_9BACI Molybdenum cofactor synthesis domain protein     75   2e-12
A4IL38.1 A4IL38_GEOTN Molybdopterin biosynthesis MoeA protein          74   3e-12
Q5L1X3.1 Q5L1X3_GEOKA Molybdopterin cofactor biosynthesis protein      72   1e-11
B1HQS9.1 B1HQS9_LYSSC Molybdopterin biosynthesis protein               71   4e-11

>B3K6K0.1 B3K6K0_9BACI Molybdenum cofactor synthesis domain protein
          Length = 429

 Score = 95.5 bits (236), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 59/85 (69%)

Query: 9  DSKFHRKALQVAEAQSRIMEYAKLLQMEKVPLDQSVGRYLAEPVYAPHPFPAFNRSGMDG 68
          + KF R+ALQV++AQ+    YA   Q E + L  S GR LA  V APHPFPAF RSGMDG
Sbjct: 13 NHKFDRRALQVSDAQALATSYADCGQEELISLQDSDGRVLASDVVAPHPFPAFARSGMDG 72

Query: 69 YALMAADTEEAGEGKRVWLDVVDNI 93
          YA+ +AD     +G++VWL+VVD+I
Sbjct: 73 YAVSSADLAPCDQGEKVWLEVVDHI 97


>B4BIJ5.1 B4BIJ5_9BACI Molybdenum cofactor synthesis domain protein
          Length = 419

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 56/89 (62%)

Query: 14  RKALQVAEAQSRIMEYAKLLQMEKVPLDQSVGRYLAEPVYAPHPFPAFNRSGMDGYALMA 73
           R  + VAEA +R+M YA + + E VPL QS GRYLAE + A H  P F+RS  DG+A+ A
Sbjct: 5   RTPIPVAEAINRVMCYAGVGEEETVPLRQSYGRYLAEDLCADHDVPPFDRSPYDGFAIRA 64

Query: 74  ADTEEAGEGKRVWLDVVDNIXXXXLRRRT 102
           AD++EAG    V  +V++ I    +  +T
Sbjct: 65  ADSQEAGLNHPVEFEVIEAIGAGQVATKT 93


>A4IL38.1 A4IL38_GEOTN Molybdopterin biosynthesis MoeA protein
          Length = 419

 Score = 74.3 bits (181), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 56/89 (62%)

Query: 14  RKALQVAEAQSRIMEYAKLLQMEKVPLDQSVGRYLAEPVYAPHPFPAFNRSGMDGYALMA 73
           R  + VAEA +R+M YA + + E VPL QS GRYLAE + A H  P F+RS  DG+A+ A
Sbjct: 5   RTPIPVAEAINRVMCYAGVGEEETVPLRQSYGRYLAEDLCADHDVPPFDRSPYDGFAIRA 64

Query: 74  ADTEEAGEGKRVWLDVVDNIXXXXLRRRT 102
           AD++EAG    V  +V++ I    +  +T
Sbjct: 65  ADSQEAGLDHPVEFEVIEAIGAGQVATKT 93


>Q5L1X3.1 Q5L1X3_GEOKA Molybdopterin cofactor biosynthesis protein
          Length = 419

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 51/80 (63%)

Query: 14 RKALQVAEAQSRIMEYAKLLQMEKVPLDQSVGRYLAEPVYAPHPFPAFNRSGMDGYALMA 73
          R  + VAEA  R+M YA + + E VPL QS GRYLAE + A H  P F+RS  DG+A+ A
Sbjct: 5  RTPIPVAEAIERVMRYAGVGEEETVPLRQSYGRYLAEDLRADHDVPPFDRSPYDGFAIRA 64

Query: 74 ADTEEAGEGKRVWLDVVDNI 93
          AD+E AG    V  +V++ I
Sbjct: 65 ADSEGAGLDHPVEFEVIETI 84


>B1HQS9.1 B1HQS9_LYSSC Molybdopterin biosynthesis protein
          Length = 429

 Score = 70.9 bits (172), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 51/80 (63%)

Query: 14 RKALQVAEAQSRIMEYAKLLQMEKVPLDQSVGRYLAEPVYAPHPFPAFNRSGMDGYALMA 73
          R+ + V+EA  R+MEYA   + E VPL Q+ GR++AE + A H  PAF+RS  DGYA+ +
Sbjct: 5  RQPIPVSEAVHRVMEYAFQAKKEFVPLSQAYGRFIAEDIVADHDVPAFDRSPYDGYAIRS 64

Query: 74 ADTEEAGEGKRVWLDVVDNI 93
           D++EA   + V   VV  I
Sbjct: 65 IDSQEASSAQPVIFQVVGEI 84


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 550,859,346
Number of extensions: 19492159
Number of successful extensions: 45334
Number of sequences better than 1.0e-05: 284
Number of HSP's gapped: 45408
Number of HSP's successfully gapped: 284
Length of query: 102
Length of database: 3,060,696,203
Length adjustment: 70
Effective length of query: 32
Effective length of database: 2,401,225,153
Effective search space: 76839204896
Effective search space used: 76839204896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)