BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0021.p (170 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6K3.1 B3K6K3_9BACI Putative uncharacterized protein 238 2e-61 B1D4Q9.1 B1D4Q9_9BACL Putative uncharacterized protein 196 5e-49 C2YY35.1 C2YY35_BACCE Putative uncharacterized protein 182 6e-45 C2PLV2.1 C2PLV2_BACCE Putative uncharacterized protein 182 6e-45 C2Y0S3.1 C2Y0S3_BACCE Putative uncharacterized protein 182 7e-45 >B3K6K3.1 B3K6K3_9BACI Putative uncharacterized protein Length = 166 Score = 238 bits (606), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 110/165 (66%), Positives = 130/165 (78%) Query: 6 IWKRIGNIFSKPEAPAAPKSMLDLSPGDICEVSLVTYEVTGRTQTSGRNAVVLTLRDGSS 65 +WKRI N+FSKPE P KSML L+PGDICEVSLVTYEVTGR GRNAVVLTL+DGS+ Sbjct: 1 MWKRISNLFSKPEPPKVEKSMLQLAPGDICEVSLVTYEVTGRVHNRGRNAVVLTLQDGST 60 Query: 66 IGYLYIEQREQLQYALYQPIDGRLDNPAEVPAXXXXXXXXXXXXXXXXGYASVTGQTPYM 125 I YL+IE+RE +QYALY PIDGRLD+P EVP+ G+ S++G+T +M Sbjct: 61 IAYLHIEERETVQYALYAPIDGRLDSPDEVPSIIDLDDHVFHLEEEYGGHVSISGRTAFM 120 Query: 126 NGGQQHVWQYQSDESRLLRVEWQNGRFMLYEGEKVIPGDVKVIRA 170 G+QHVWQYQSD+ +LLR+EWQNGRFMLYEGEKVIPGDV+VIRA Sbjct: 121 QSGEQHVWQYQSDDYKLLRIEWQNGRFMLYEGEKVIPGDVRVIRA 165 >B1D4Q9.1 B1D4Q9_9BACL Putative uncharacterized protein Length = 168 Score = 196 bits (499), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 94/166 (56%), Positives = 118/166 (71%) Query: 4 LSIWKRIGNIFSKPEAPAAPKSMLDLSPGDICEVSLVTYEVTGRTQTSGRNAVVLTLRDG 63 +SI+KRI I +KPE A KS+L L+PGD+CEVSLVTY+VTG ++ RNAVVLTL+DG Sbjct: 1 MSIFKRIKKIMAKPEPVKAEKSILSLAPGDVCEVSLVTYQVTGSSRNRSRNAVVLTLQDG 60 Query: 64 SSIGYLYIEQREQLQYALYQPIDGRLDNPAEVPAXXXXXXXXXXXXXXXXGYASVTGQTP 123 S I YL IE+RE+ +ALY+ IDGRLD EVP G + G+TP Sbjct: 61 SDIRYLSIEERERTVFALYEQIDGRLDTFDEVPTTLELDDRAYHMEENFSGMIAANGKTP 120 Query: 124 YMNGGQQHVWQYQSDESRLLRVEWQNGRFMLYEGEKVIPGDVKVIR 169 +M GG+Q+VWQYQSD+ +LLRVEW +GRFMLY GE V+P DV+VIR Sbjct: 121 FMQGGEQYVWQYQSDDMKLLRVEWLDGRFMLYVGESVLPADVRVIR 166 >C2YY35.1 C2YY35_BACCE Putative uncharacterized protein Length = 168 Score = 182 bits (463), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 85/167 (50%), Positives = 108/167 (64%) Query: 4 LSIWKRIGNIFSKPEAPAAPKSMLDLSPGDICEVSLVTYEVTGRTQTSGRNAVVLTLRDG 63 +S++KRI NI PE P KS+L L+PGD+ EVSLV YE+TG+T R +VLTL+DG Sbjct: 1 MSLFKRIKNIMKSPEPPKPEKSLLTLAPGDMIEVSLVMYELTGKTSMHSRKEIVLTLQDG 60 Query: 64 SSIGYLYIEQREQLQYALYQPIDGRLDNPAEVPAXXXXXXXXXXXXXXXXGYASVTGQTP 123 I YL IE RE Y LY PIDGRLD+ E+P G V G+TP Sbjct: 61 KDIRYLKIEDRENTYYKLYTPIDGRLDSIDEIPTTIEMDDTEYHMEEQYNGRVVVMGKTP 120 Query: 124 YMNGGQQHVWQYQSDESRLLRVEWQNGRFMLYEGEKVIPGDVKVIRA 170 + +QHVW++QSD +LLR+EWQNGR M+YEGE +IP DV++IRA Sbjct: 121 FSASEEQHVWEFQSDNRKLLRIEWQNGRTMMYEGEAIIPADVQIIRA 167 >C2PLV2.1 C2PLV2_BACCE Putative uncharacterized protein Length = 168 Score = 182 bits (463), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 85/167 (50%), Positives = 108/167 (64%) Query: 4 LSIWKRIGNIFSKPEAPAAPKSMLDLSPGDICEVSLVTYEVTGRTQTSGRNAVVLTLRDG 63 +S++KRI NI PE P KS+L L+PGD+ EVSLV YE+TG+T R +VLTL+DG Sbjct: 1 MSLFKRIKNIMKSPEPPKPEKSLLTLAPGDMIEVSLVMYELTGKTSMHSRKEIVLTLQDG 60 Query: 64 SSIGYLYIEQREQLQYALYQPIDGRLDNPAEVPAXXXXXXXXXXXXXXXXGYASVTGQTP 123 I YL IE RE Y LY PIDGRLD+ E+P G V G+TP Sbjct: 61 KDIRYLKIEDRENTYYKLYTPIDGRLDSIDEIPTTIEMDDTEYHMEEQYNGRVVVMGKTP 120 Query: 124 YMNGGQQHVWQYQSDESRLLRVEWQNGRFMLYEGEKVIPGDVKVIRA 170 + +QHVW++QSD +LLR+EWQNGR M+YEGE +IP DV++IRA Sbjct: 121 FSASEEQHVWEFQSDNRKLLRIEWQNGRTMMYEGEAIIPADVQIIRA 167 >C2Y0S3.1 C2Y0S3_BACCE Putative uncharacterized protein Length = 168 Score = 182 bits (463), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 84/167 (50%), Positives = 108/167 (64%) Query: 4 LSIWKRIGNIFSKPEAPAAPKSMLDLSPGDICEVSLVTYEVTGRTQTSGRNAVVLTLRDG 63 +S++KRI NI PE P KS+L L+PGD+ EVSL+ YE+TG+T R +VLTL+DG Sbjct: 1 MSLFKRIKNIMKSPEPPKPEKSLLTLAPGDMIEVSLIMYELTGKTSMHSRKEIVLTLQDG 60 Query: 64 SSIGYLYIEQREQLQYALYQPIDGRLDNPAEVPAXXXXXXXXXXXXXXXXGYASVTGQTP 123 I YL IE RE Y LY PIDGRLD+ E+P G V G+TP Sbjct: 61 KDIRYLKIEDRENTYYKLYTPIDGRLDSIDEIPTTIEMDDTEYHMEEQYNGRVVVMGKTP 120 Query: 124 YMNGGQQHVWQYQSDESRLLRVEWQNGRFMLYEGEKVIPGDVKVIRA 170 + +QHVW++QSD +LLR+EWQNGR M+YEGE +IP DV++IRA Sbjct: 121 FAASEEQHVWEFQSDNRKLLRIEWQNGRTMMYEGETIIPADVQIIRA 167 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.134 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 990,131,466 Number of extensions: 35265912 Number of successful extensions: 65599 Number of sequences better than 1.0e-05: 80 Number of HSP's gapped: 65521 Number of HSP's successfully gapped: 80 Length of query: 170 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 44 Effective length of database: 1,873,648,313 Effective search space: 82440525772 Effective search space used: 82440525772 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)