BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0402.0020.p
         (136 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K6K4.1 B3K6K4_9BACI Putative uncharacterized protein                127   4e-28
C3BRI7.1 C3BRI7_9BACI Putative uncharacterized protein                110   6e-23
C3B9J5.1 C3B9J5_BACMY Putative uncharacterized protein                110   6e-23
C3AS51.1 C3AS51_BACMY Putative uncharacterized protein                110   6e-23
C0ZG60.1 C0ZG60_BREBN Putative uncharacterized protein                108   1e-22

>B3K6K4.1 B3K6K4_9BACI Putative uncharacterized protein
          Length = 134

 Score =  127 bits (318), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 85/132 (64%)

Query: 1   MDFHILVSMVVWTVSGSVLLCVLMYVDSLFTRYNDLEEIKAGNMAVTMRFVLKLLAQGYX 60
           MDF +++ +++WT  G +LL VLM+VDSLFT+YNDLEE+KAGNMAVT R +LKL+AQGY 
Sbjct: 1   MDFDMILRVLLWTAVGGLLLFVLMFVDSLFTKYNDLEEVKAGNMAVTTRLILKLVAQGYI 60

Query: 61  XXXXXXXXXXXGDAXXXXXXXXXXXXXXEKIVRLLLFTWAKLDLDHGTQLGKIGYGVLAG 120
                       +A              E +  L+L  + KL+LD GT+ GK GYG+ AG
Sbjct: 61  LSVSIGTSYHLLEAIVVSVVSFIILFVLEALTELMLRNFGKLNLDKGTREGKTGYGLFAG 120

Query: 121 SLHVTGALIIAA 132
           SLHV GALII A
Sbjct: 121 SLHVVGALIITA 132


>C3BRI7.1 C3BRI7_9BACI Putative uncharacterized protein
          Length = 134

 Score =  110 bits (274), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 60/132 (45%), Positives = 81/132 (61%)

Query: 1   MDFHILVSMVVWTVSGSVLLCVLMYVDSLFTRYNDLEEIKAGNMAVTMRFVLKLLAQGYX 60
           M +  +++M+VWT + +VLL VLM+VDS+FT+YNDL EIK GN+AVT RF++KL AQGY 
Sbjct: 1   MTWMNVLAMLVWTGASAVLLFVLMWVDSIFTKYNDLAEIKKGNIAVTTRFIMKLFAQGYI 60

Query: 61  XXXXXXXXXXXGDAXXXXXXXXXXXXXXEKIVRLLLFTWAKLDLDHGTQLGKIGYGVLAG 120
                        A              E  + L+L   A LDL+ GT+ G + + +LAG
Sbjct: 61  LSQSITKANDLWQALLASAVSFVILLVVEMFIELILKKVAGLDLEGGTKQGNVAHALLAG 120

Query: 121 SLHVTGALIIAA 132
           SLHV GALI+AA
Sbjct: 121 SLHVVGALILAA 132


>C3B9J5.1 C3B9J5_BACMY Putative uncharacterized protein
          Length = 134

 Score =  110 bits (274), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 60/132 (45%), Positives = 81/132 (61%)

Query: 1   MDFHILVSMVVWTVSGSVLLCVLMYVDSLFTRYNDLEEIKAGNMAVTMRFVLKLLAQGYX 60
           M +  +++M+VWT + +VLL VLM+VDS+FT+YNDL EIK GN+AVT RF++KL AQGY 
Sbjct: 1   MTWMNVLAMLVWTGASAVLLFVLMWVDSIFTKYNDLAEIKKGNIAVTTRFIMKLFAQGYI 60

Query: 61  XXXXXXXXXXXGDAXXXXXXXXXXXXXXEKIVRLLLFTWAKLDLDHGTQLGKIGYGVLAG 120
                        A              E  + L+L   A LDL+ GT+ G + + +LAG
Sbjct: 61  LSQSITKANDLWQALLASAVSFVILLVVEMFIELILKKVAGLDLEGGTKQGNVAHALLAG 120

Query: 121 SLHVTGALIIAA 132
           SLHV GALI+AA
Sbjct: 121 SLHVVGALILAA 132


>C3AS51.1 C3AS51_BACMY Putative uncharacterized protein
          Length = 134

 Score =  110 bits (274), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 60/132 (45%), Positives = 81/132 (61%)

Query: 1   MDFHILVSMVVWTVSGSVLLCVLMYVDSLFTRYNDLEEIKAGNMAVTMRFVLKLLAQGYX 60
           M +  +++M+VWT + +VLL VLM+VDS+FT+YNDL EIK GN+AVT RF++KL AQGY 
Sbjct: 1   MTWMNVLAMLVWTGASAVLLFVLMWVDSIFTKYNDLAEIKKGNIAVTTRFIMKLFAQGYI 60

Query: 61  XXXXXXXXXXXGDAXXXXXXXXXXXXXXEKIVRLLLFTWAKLDLDHGTQLGKIGYGVLAG 120
                        A              E  + L+L   A LDL+ GT+ G + + +LAG
Sbjct: 61  LSQSITKANDLWQALLASAVSFVILLVVEMFIELILKKVAGLDLEGGTKQGNVAHALLAG 120

Query: 121 SLHVTGALIIAA 132
           SLHV GALI+AA
Sbjct: 121 SLHVVGALILAA 132


>C0ZG60.1 C0ZG60_BREBN Putative uncharacterized protein
          Length = 134

 Score =  108 bits (271), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/132 (44%), Positives = 79/132 (59%)

Query: 1   MDFHILVSMVVWTVSGSVLLCVLMYVDSLFTRYNDLEEIKAGNMAVTMRFVLKLLAQGYX 60
           M +  ++ M+VWT +G +LL VLM++DSLFT+Y D+ EIK GN+AVT RFV+KL AQGY 
Sbjct: 1   MTWTEILGMLVWTGAGGILLFVLMWIDSLFTKYKDITEIKNGNIAVTTRFVMKLFAQGYI 60

Query: 61  XXXXXXXXXXXGDAXXXXXXXXXXXXXXEKIVRLLLFTWAKLDLDHGTQLGKIGYGVLAG 120
                        A              E+IV  LL     LDL+ GTQ GK+ + ++AG
Sbjct: 61  LSQSIITSNSLWTALLFSVVSFIILFLLERIVEWLLKQVTGLDLEKGTQEGKVAHAMMAG 120

Query: 121 SLHVTGALIIAA 132
           S H+ GALI+AA
Sbjct: 121 SFHLVGALILAA 132


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.329    0.143    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 578,050,824
Number of extensions: 15177710
Number of successful extensions: 43993
Number of sequences better than 1.0e-05: 78
Number of HSP's gapped: 43915
Number of HSP's successfully gapped: 78
Length of query: 136
Length of database: 3,060,696,203
Length adjustment: 100
Effective length of query: 36
Effective length of database: 2,118,594,703
Effective search space: 76269409308
Effective search space used: 76269409308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)