BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0016.p (208 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B0A7T2.1 B0A7T2_9CLOT Putative uncharacterized protein 223 8e-57 B6FW00.1 B6FW00_9CLOT Putative uncharacterized protein 219 2e-55 Q18CS7.1 Q18CS7_CLOD6 Dihydroorotate dehydrogenase electron tran... 218 4e-55 Q896R9.1 Q896R9_CLOTE Dihydroorotate dehydrogenase electron tran... 216 9e-55 B3K3V8.1 B3K3V8_9BACI Oxidoreductase FAD/NAD(P)-binding domain p... 205 2e-51 >B0A7T2.1 B0A7T2_9CLOT Putative uncharacterized protein Length = 234 Score = 223 bits (568), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 105/208 (50%), Positives = 135/208 (64%), Gaps = 2/208 (0%) Query: 1 MGQFYMLRAWGAFPLLSRPLSIHQVNDNGVEFLYHVVGEGTKILAELEPGDSLELEGPFG 60 MGQFYMLRAW +P LSRP+SIH +++N + FLY VVGEGTKI + L PGD+++LEGP+G Sbjct: 27 MGQFYMLRAWDNYPTLSRPISIHDIDENSITFLYKVVGEGTKIFSRLTPGDNIKLEGPYG 86 Query: 61 SGFPVVDGKVALVGGGIGIAPLYYCAQELPGSDIYLGFSREAFRTEAFRPLAAELTVNVG 120 +G+ V+GKVALVGGGIG+APLY A+ +P SD YLGF E + + + + VG Sbjct: 87 NGYQKVEGKVALVGGGIGVAPLYLVAKNIPSSDSYLGFRNEPILIDKYEEVCNNVKTAVG 146 Query: 121 G-LVLDSVDFTSYDHIFVCGPHPMXXXXXXXXXXXXXXX-KRPNVYLSLENRMACGIGAC 178 V D ++ YD+I CGP PM V +SLENRMACG+GAC Sbjct: 147 STFVTDIINTEEYDYILTCGPTPMMKALMDKVEKTNAEKGTNTRVMVSLENRMACGMGAC 206 Query: 179 LVCSVSCRDGQRKACADGPVFLAEEVIF 206 LVC+ + G +K C DGPVF E+VIF Sbjct: 207 LVCTCKTQGGNKKTCKDGPVFWGEDVIF 234 >B6FW00.1 B6FW00_9CLOT Putative uncharacterized protein Length = 228 Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 102/207 (49%), Positives = 136/207 (65%), Gaps = 6/207 (2%) Query: 1 MGQFYMLRAWGAFPLLSRPLSIHQVNDNGVEFLYHVVGEGTKILAELEPGDSLELEGPFG 60 MGQFYMLRAW +P+LSRP+SIH +++ G+ FLY VVGEGT+I A+L PGD ++L+GP+G Sbjct: 27 MGQFYMLRAWDKYPVLSRPISIHDIDEEGITFLYKVVGEGTEIFAKLVPGDEIKLQGPYG 86 Query: 61 SGFPVVDGKVALVGGGIGIAPLYYCAQELPGSDIYLGFSREAFRTEAFRPLAAELTVNVG 120 +G+ V+GKVALVGGGIG+APLY A+ +PG D YLGF EA + ++ E+ G Sbjct: 87 NGYEKVEGKVALVGGGIGVAPLYLVAKTIPGCDAYLGFREEAILVDEYKEFCNEVKTTTG 146 Query: 121 G-LVLDSVDFTSYDHIFVCGPHPMXXXXXXXXXXXXXXXKRPNVYLSLENRMACGIGACL 179 + D ++ YD+I CGP PM + +SLEN MACG+GACL Sbjct: 147 NTFITDILNVEDYDYILSCGPTPMMEKLVKMCEGT-----NTRIMISLENHMACGVGACL 201 Query: 180 VCSVSCRDGQRKACADGPVFLAEEVIF 206 VC+ + G +K C DGPVF E+VIF Sbjct: 202 VCTCKTKFGNKKTCKDGPVFWGEDVIF 228 >Q18CS7.1 Q18CS7_CLOD6 Dihydroorotate dehydrogenase electron transfer subunit Length = 230 Score = 218 bits (554), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 100/208 (48%), Positives = 136/208 (65%), Gaps = 6/208 (2%) Query: 1 MGQFYMLRAWGAFPLLSRPLSIHQVNDNGVEFLYHVVGEGTKILAELEPGDSLELEGPFG 60 MGQFYMLRAW +P+LSRP+SIH +++ G+ FLY VVGEGT+IL+ L+ D+++LEGP+G Sbjct: 27 MGQFYMLRAWDTYPVLSRPISIHDIDEEGITFLYKVVGEGTQILSNLKVNDNIKLEGPYG 86 Query: 61 SGFPVVDGKVALVGGGIGIAPLYYCAQELPGSDIYLGFSREAFRTEAFRPLAAELTVNVG 120 +G+ VDGKVALVGGGIG+APLY A+ + D YLGF + + ++ + ++ VG Sbjct: 87 NGYAKVDGKVALVGGGIGVAPLYLVAKNIKNCDAYLGFREDVILEDEYKQVCNKVYTTVG 146 Query: 121 G-LVLDSVDFTSYDHIFVCGPHPMXXXXXXXXXXXXXXXKRPNVYLSLENRMACGIGACL 179 V D +D YD+I CGP PM + + +SLEN MACG+GACL Sbjct: 147 NTFVTDIIDVEKYDYILTCGPTPMMEKLVKMVEGT-----KTRIMVSLENHMACGVGACL 201 Query: 180 VCSVSCRDGQRKACADGPVFLAEEVIFH 207 VC+ G +K C DGPVF E+VIF+ Sbjct: 202 VCTCKTNGGNKKTCKDGPVFWGEDVIFN 229 >Q896R9.1 Q896R9_CLOTE Dihydroorotate dehydrogenase electron transfer subunit Length = 237 Score = 216 bits (550), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 100/210 (47%), Positives = 141/210 (67%), Gaps = 11/210 (5%) Query: 1 MGQFYMLRAWGAFPLLSRPLSIHQVNDNGVEFLYHVVGEGTKILAELEPGDSLELEGPFG 60 MGQF MLRAW +P LSRP+SI+ ++ G+ FLY VVG+GT+ILA L+ GD ++++GP G Sbjct: 32 MGQFCMLRAWDKYPTLSRPISIYDIDHEGITFLYKVVGKGTEILATLKKGDEIKVDGPHG 91 Query: 61 SGFPVVDGKVALVGGGIGIAPLYYCAQELPGS------DIYLGFSREAFRTEAFRPLAAE 114 +GF V GK+ALVGGG+GIAPLY ++ L G+ DI+LGFS EA E ++ +A + Sbjct: 92 NGFSKVKGKIALVGGGVGIAPLYLASKVLKGTSKDTTVDIFLGFSDEALLEEEYKKVADK 151 Query: 115 LTVNVGGLVLDSVDFTSYDHIFVCGPHPMXXXXXXXXXXXXXXXKRPNVYLSLENRMACG 174 + VN+GG + D ++ YD+IF CGP M + +Y+S+ENRMACG Sbjct: 152 VVVNLGGFITDDINPDEYDYIFTCGPEVMMKVLYNKTKNS-----KTKLYVSMENRMACG 206 Query: 175 IGACLVCSVSCRDGQRKACADGPVFLAEEV 204 +G CLVC+ + G ++AC +GPVFL E+V Sbjct: 207 VGVCLVCTCKTKKGNKRACKEGPVFLGEDV 236 >B3K3V8.1 B3K3V8_9BACI Oxidoreductase FAD/NAD(P)-binding domain protein Length = 233 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 96/208 (46%), Positives = 135/208 (64%), Gaps = 5/208 (2%) Query: 1 MGQFYMLRAWGAFPLLSRPLSIHQVNDNGVEFLYHVVGEGTKILAELEPGDSLELEGPFG 60 MGQF+MLR W A+P+LSRP+S+H + ++ V FLY V G GT +L+ L+ GD ++LEGPFG Sbjct: 27 MGQFFMLRCWDAYPVLSRPISVHNLTEDSVSFLYRVQGTGTWLLSALQAGDKIQLEGPFG 86 Query: 61 SGFPVVDGKVALVGGGIGIAPLYYCAQELPGSDIYLGFSREAFRTEAFRPLAAELTVNVG 120 GFP G+ ALVGGGIG+APL A+E+P + +YLG++ F F ++ ++TV G Sbjct: 87 QGFPEPQGRTALVGGGIGVAPLLLAAKEIPEASVYLGYAGVPFGVNGFHEISRDVTVKSG 146 Query: 121 GLVLDSVDFTSYDHIFVCGPHPMXXXXXXXXXXXXXXXKRPNVYLSLENRMACGIGACLV 180 G ++D+VD + YD I CGP M +++S+E RM CGIGAC Sbjct: 147 GTIVDAVDPSRYDTILACGPVGM-----MHSLAQKAEGTNAKLHVSIEKRMGCGIGACNS 201 Query: 181 CSVSCRDGQRKACADGPVFLAEEVIFHD 208 C+++ RKAC DGPVFLA+EV ++D Sbjct: 202 CTLTAAGSNRKACTDGPVFLAKEVNWND 229 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.144 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,245,774,351 Number of extensions: 50206053 Number of successful extensions: 116885 Number of sequences better than 1.0e-05: 506 Number of HSP's gapped: 115787 Number of HSP's successfully gapped: 513 Length of query: 208 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 78 Effective length of database: 1,835,964,253 Effective search space: 143205211734 Effective search space used: 143205211734 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)