BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0015.p (351 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6K6.1 B3K6K6_9BACI NADH:flavin oxidoreductase/NADH oxidase 459 e-127 C0ZJV8.1 C0ZJV8_BREBN NADPH dehydrogenase EC=1.6.99.1 402 e-110 B1D5Y7.1 B1D5Y7_9BACL NADH:flavin oxidoreductase/NADH oxidase 401 e-110 C1P8A1.1 C1P8A1_BACCO NADH:flavin oxidoreductase/NADH oxidase 400 e-110 Q8EU61.1 Q8EU61_OCEIH NADH-dependent flavin oxidoreductase 399 e-109 >B3K6K6.1 B3K6K6_9BACI NADH:flavin oxidoreductase/NADH oxidase Length = 340 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 223/344 (64%), Positives = 260/344 (75%), Gaps = 5/344 (1%) Query: 3 MPDLFAPYELKALXXXXLKNRVVMPPMCQYAVDKQDGIPNDWHFVHYVSRAVGGTGFIIV 62 M DLF PY K L LKNR+VMPPMCQY+V DGIPNDWHFVHYVSRAVGGTG IIV Sbjct: 1 MADLFTPYNFKNLT---LKNRIVMPPMCQYSVKAGDGIPNDWHFVHYVSRAVGGTGLIIV 57 Query: 63 EMTGIHPDGRITNQDTGIWSDEHIAAYRRLTDAVHTQGARIAIQLGHAGRKAQDAEPPVA 122 EMTG+HPDGRITNQDTGIW D I AYRR+ DAVH+ G +I IQLGHAGRKAQDAEP VA Sbjct: 58 EMTGVHPDGRITNQDTGIWDDNQIPAYRRIVDAVHSYGTKIGIQLGHAGRKAQDAEPSVA 117 Query: 123 PSAIPFDANSKTPRELRTEEIAGLVEAYREGARRAVEAGFDTVELHGAHGYLIHQFHSPL 182 PSAIPF ++ K P+ L T E+ L++A+REGARRAVEAGFDTVE+HGAHGYLIHQFHSPL Sbjct: 118 PSAIPFSSHYKMPKALSTAEVEDLIQAFREGARRAVEAGFDTVEIHGAHGYLIHQFHSPL 177 Query: 183 TNVREDEYGADPVLFGEQVTRAVREVLPVEMPLLMRVSAKEYVEGGYNEDYALEFCRRYK 242 TN R DEYG D LFGE+V +AV+EVLP MP++MRVSAKEYV+GGY+ +Y E C+RY+ Sbjct: 178 TNQRSDEYGQDLPLFGERVVQAVKEVLPEGMPIIMRVSAKEYVDGGYDVEYCAEICKRYR 237 Query: 243 AAGVDMFHVXXXXXXXXXXXXXXXXXXAYQVALAEYIRSGLQVPVIAVGRLESYEEAQSI 302 AGVD+FH+ YQV LA + L+VPVIAVG L+ Y AQ + Sbjct: 238 DAGVDIFHISSGGEGVVGSNGGPEAKPGYQVDLAAEFKQLLKVPVIAVGLLDDYNVAQEV 297 Query: 303 VTGEKAELVAVGRGMLSDPYWALHAEEALGGIDKANVPKPYERG 346 V KA++VA+GRGML DPYWA+HA +AL ++ VPK YERG Sbjct: 298 VLSGKADMVAIGRGMLRDPYWAVHAAKALD--EEQKVPKQYERG 339 >C0ZJV8.1 C0ZJV8_BREBN NADPH dehydrogenase EC=1.6.99.1 Length = 342 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 199/344 (57%), Positives = 240/344 (69%), Gaps = 5/344 (1%) Query: 3 MPDLFAPYELKALXXXXLKNRVVMPPMCQYAVDKQDGIPNDWHFVHYVSRAVGGTGFIIV 62 M L P++ K L LKNR+VMPPMCQY+VD DG P DWHFVHYVSRAVGGTG IIV Sbjct: 1 MALLSTPFQFKGLS---LKNRIVMPPMCQYSVDAHDGTPTDWHFVHYVSRAVGGTGLIIV 57 Query: 63 EMTGIHPDGRITNQDTGIWSDEHIAAYRRLTDAVHTQGARIAIQLGHAGRKAQDAEPPVA 122 EMT + PDGRI+N D G+WSDE I AY R+ VH GA+I IQ+ HAGRKA+DAE PV+ Sbjct: 58 EMTDVEPDGRISNGDLGLWSDEQIPAYARIVSEVHKYGAKIGIQIAHAGRKAEDAEVPVS 117 Query: 123 PSAIPFDANS-KTPRELRTEEIAGLVEAYREGARRAVEAGFDTVELHGAHGYLIHQFHSP 181 SAI F KTPR L TEE+ +V +++ ARRAVEAGFDT+E+HGAHGYL+HQFHSP Sbjct: 118 SSAIAFPGGRYKTPRALTTEEVKQMVVKFQDSARRAVEAGFDTIEIHGAHGYLVHQFHSP 177 Query: 182 LTNVREDEYGADPVLFGEQVTRAVREVLPVEMPLLMRVSAKEYVEGGYNEDYALEFCRRY 241 LTN R+DEYG D LFG ++ +A++EV+P +MPL+MRVSA EYV+GGY DY+ E CRRY Sbjct: 178 LTNQRDDEYGRDKALFGVEIIQAIKEVIPADMPLIMRVSAVEYVDGGYGLDYSTELCRRY 237 Query: 242 KAAGVDMFHVXXXXXXXXXXXXXXXXXXAYQVALAEYIRSGLQVPVIAVGRLESYEEAQS 301 K AGVD+FH+ YQV LA I+ L VPVIAVG L+ + A++ Sbjct: 238 KEAGVDIFHISSGGEGPIGSAGRPGVHPGYQVPLARAIKQALDVPVIAVGNLDDPQVAEA 297 Query: 302 IVTGEKAELVAVGRGMLSDPYWALHAEEALGGIDKANVPKPYER 345 + +LVAVGRGML DPYWALHA L D+ PK Y R Sbjct: 298 SIGNGDTDLVAVGRGMLRDPYWALHAIHELSA-DELQPPKQYSR 340 >B1D5Y7.1 B1D5Y7_9BACL NADH:flavin oxidoreductase/NADH oxidase Length = 343 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 196/344 (56%), Positives = 240/344 (69%), Gaps = 5/344 (1%) Query: 3 MPDLFAPYELKALXXXXLKNRVVMPPMCQYAVDKQDGIPNDWHFVHYVSRAVGGTGFIIV 62 M LF PYE+K+L LKNRVVMPPMCQY+V + GI NDWH+ HYVSRAVGG G II+ Sbjct: 1 MKHLFTPYEIKSLS---LKNRVVMPPMCQYSVTAKGGIANDWHYAHYVSRAVGGAGLIII 57 Query: 63 EMTGIHPDGRITNQDTGIWSDEHIAAYRRLTDAVHTQGARIAIQLGHAGRKAQDAEPPVA 122 EMT + PDGRIT+ D G+WSD+HI A R+ +AVH GA+I IQ+ HAGRKA+DAE PVA Sbjct: 58 EMTDVEPDGRITDYDLGLWSDDHIPALARIVEAVHQHGAKIGIQIAHAGRKAEDAELPVA 117 Query: 123 PSAIPFDANSKTPRELRTEEIAGLVEAYREGARRAVEAGFDTVELHGAHGYLIHQFHSPL 182 PSAIPFD NSKTPR L TEE +VE +R RRAV+AG DT+E+HGAHGYLIHQF SPL Sbjct: 118 PSAIPFDENSKTPRALTTEEAEQMVEKFRLAVRRAVQAGVDTIEIHGAHGYLIHQFVSPL 177 Query: 183 TNVREDEYGADPVLFGEQVTRAVREVLPVEMPLLMRVSAKEYVEGGYNEDYALEFCRRYK 242 TN R D+YG D LFG++V +A + +P MPL MR+SA+EY EGGY + ++ F + +K Sbjct: 178 TNKRADKYGQDRTLFGKEVIKAAKSEMPAHMPLFMRISAREYAEGGYGINESIAFAKEFK 237 Query: 243 AAGVDMFHVXXXXXXXXXXXXXXXXXXAYQVALAEYIRSGLQVPVIAVGRLESYEEAQSI 302 AGVD+FH+ YQV LA IR L +PVIAVGRL+ A S+ Sbjct: 238 EAGVDVFHISAGGEGQIAAAGRPGTHAGYQVPLARAIREALDIPVIAVGRLDDPALANSV 297 Query: 303 VTGEKAELVAVGRGMLSDPYWALHAEEALGGIDKANVPKPYERG 346 + E A+LVAVGRGML +PYWAL A L + VP+ Y+RG Sbjct: 298 IGNEDADLVAVGRGMLRNPYWALEAASVLH--KEIEVPRQYDRG 339 >C1P8A1.1 C1P8A1_BACCO NADH:flavin oxidoreductase/NADH oxidase Length = 343 Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust. Identities = 196/348 (56%), Positives = 247/348 (70%), Gaps = 5/348 (1%) Query: 3 MPDLFAPYELKALXXXXLKNRVVMPPMCQYAVDKQDGIPNDWHFVHYVSRAVGGTGFIIV 62 M DLF PY+LK+L +KNR+VMPPMCQY+V+K+DG+ DWH+VHYVSRA+GGTG II+ Sbjct: 1 MNDLFTPYKLKSLE---VKNRIVMPPMCQYSVEKKDGVATDWHYVHYVSRAIGGTGLIIM 57 Query: 63 EMTGIHPDGRITNQDTGIWSDEHIAAYRRLTDAVHTQGARIAIQLGHAGRKAQDAEPPVA 122 EMT + PDGRIT+ D G+WSDE IA ++ +A H GA++ IQ+GHAGRKAQDA+ PVA Sbjct: 58 EMTDVEPDGRITDNDLGLWSDEQIAPLAKIVEACHQYGAKVGIQIGHAGRKAQDAKQPVA 117 Query: 123 PSAIPFDANSKTPRELRTEEIAGLVEAYREGARRAVEAGFDTVELHGAHGYLIHQFHSPL 182 PS IPFD ++KTPR L EEI +V + E RRAV+AGFDT+ELHGAHGYLIH+F S Sbjct: 118 PSPIPFDDHAKTPRALTKEEIKEIVRKFGESVRRAVQAGFDTIELHGAHGYLIHEFQSRY 177 Query: 183 TNVREDEYGADPVLFGEQVTRAVREVLPVEMPLLMRVSAKEYVEGGYNEDYALEFCRRYK 242 TN R DEYG D LFG++V A + +P +MPL+MR+SA+EYV+GGY + ++ + YK Sbjct: 178 TNKRSDEYGQDLALFGKEVIAAAKSEMPADMPLIMRISAREYVDGGYGIEESIALSKAYK 237 Query: 243 AAGVDMFHVXXXXXXXXXXXXXXXXXXAYQVALAEYIRSGLQVPVIAVGRLESYEEAQSI 302 AGVD+FH+ AYQV LA I+ L VPVIAVGRLE A ++ Sbjct: 238 EAGVDLFHISSGGEGHIGAAGRPGTHAAYQVPLARQIKEALNVPVIAVGRLEDPVLANAV 297 Query: 303 VTGEKAELVAVGRGMLSDPYWALHAEEALGGIDKANVPKPYERGVWKR 350 + E+A+LVAVGRGML +PYWAL+A ALG A VP Y RG KR Sbjct: 298 IGNEEADLVAVGRGMLRNPYWALNAGIALG--KDAGVPIQYTRGFPKR 343 >Q8EU61.1 Q8EU61_OCEIH NADH-dependent flavin oxidoreductase Length = 343 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/349 (55%), Positives = 250/349 (71%), Gaps = 6/349 (1%) Query: 3 MPDLFAPYELKALXXXXLKNRVVMPPMCQYAVDKQDGIPNDWHFVHYVSRAVGGTGFIIV 62 M L Y++K L LKN++VM PMCQY+VD +DGIPNDWHFVHYVSRAVGG G IIV Sbjct: 1 MTQLDKQYKIKGLS---LKNKIVMAPMCQYSVDAKDGIPNDWHFVHYVSRAVGGAGLIIV 57 Query: 63 EMTGIHPDGRITNQDTGIWSDEHIAAYRRLTDAVHTQGARIAIQLGHAGRKAQDAEPPVA 122 EMT + PDGRIT+ D G+WSDEH+ AYRR+ D VH A+I IQ+ HAGRKA+DAEPPVA Sbjct: 58 EMTDVDPDGRITDYDLGLWSDEHVPAYRRIVDEVHRYDAKIGIQIAHAGRKAEDAEPPVA 117 Query: 123 PSAIPFDANSKTPRELRTEEIAGLVEAYREGARRAVEAGFDTVELHGAHGYLIHQFHSPL 182 PSAIP A SK PR L TEE+ V+ +++ A+RAVEAGFDT+E+HGAHGYLIHQFHSPL Sbjct: 118 PSAIPVTAESKVPRALTTEEVKQTVKQFQDAAKRAVEAGFDTIEIHGAHGYLIHQFHSPL 177 Query: 183 TNVREDEYGADPVLFGEQVTRAVREVLPVEMPLLMRVSAKEYVEGGYNEDYALEFCRRYK 242 N RED YG D LFG +V +A++EV+P +MPLLMR+SA EY++ GY+ +++++ ++Y+ Sbjct: 178 INKREDRYGEDLSLFGVEVIQAIKEVIPEDMPLLMRISAMEYMDEGYDLNHSVDIAKKYQ 237 Query: 243 AAGVDMFHVXXXXXXXXXXXXXXXXXXAYQVALAEYIRSGLQVPVIAVGRLESYEEAQSI 302 AGVD+FH+ YQ+ A R L VP+IAVG LE + A++ Sbjct: 238 EAGVDVFHI-SSGGEGPPGKRKPANHPGYQIRFARTFRQELNVPIIAVGVLEHPKVAEAA 296 Query: 303 VTGEKAELVAVGRGMLSDPYWALHAEEALGGIDKANVPKPYERGVWKRK 351 + E A+L+A+GRGML DPYWA+HA E + GI A PK YER ++K Sbjct: 297 LGNEDADLIAIGRGMLKDPYWAIHAIEEITGI--AVPPKQYERAFPRKK 343 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,055,585,341 Number of extensions: 82653316 Number of successful extensions: 220430 Number of sequences better than 1.0e-05: 3832 Number of HSP's gapped: 211665 Number of HSP's successfully gapped: 3853 Length of query: 351 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 215 Effective length of database: 1,779,438,163 Effective search space: 382579205045 Effective search space used: 382579205045 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)