BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0014.p (294 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6K7.1 B3K6K7_9BACI Polysaccharide deacetylase 268 3e-70 B1DJ57.1 B1DJ57_9BACL Polysaccharide deacetylase 215 3e-54 B1D8V3.1 B1D8V3_9BACL Polysaccharide deacetylase 208 6e-52 C3GZT1.1 C3GZT1_BACTU Peptidoglycan N-acetylglucosamine deacetylase 194 6e-48 A9VQS7.1 A9VQS7_BACWK Polysaccharide deacetylase 194 8e-48 >B3K6K7.1 B3K6K7_9BACI Polysaccharide deacetylase Length = 298 Score = 268 bits (686), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 123/212 (58%), Positives = 155/212 (73%) Query: 79 TLSQLLRKYPETIKTRGPHRKQIALTFDDVPDPRFTPQVLDVLRRYHVHATFFIVGSRAE 138 +LSQLLRKYP+T + GP KQ+ALTFDDVPDPRFT +VLDVL+ V ATFF VG RA+ Sbjct: 83 SLSQLLRKYPDTFRASGPRVKQVALTFDDVPDPRFTGKVLDVLKEQQVKATFFAVGDRAK 142 Query: 139 KHPGLVARMIREGHTVGNHSYNHPQFGKISVNAFRTQIIRTENIIKTTAGYKPRLIRPPY 198 KHP L+ R+ EGH +GNHSYNH Q K+S+ F++QI RT I+K+ G PRLIRPPY Sbjct: 143 KHPELMKRIHEEGHAIGNHSYNHAQLNKLSLEKFKSQIERTNTILKSLTGVDPRLIRPPY 202 Query: 199 GDISEPQLKWAKAHGYKLVNWNVDSLDWKGLSKSQVRXXXXXXXXXXXXXLQHXXXXXXS 258 GDI+E QL+WA+ +GYK+VNWNVDSLDWKGL K +V+ LQH S Sbjct: 203 GDINEEQLQWARKNGYKVVNWNVDSLDWKGLQKEEVKSNIMTAVGPGSIVLQHAGGGVGS 262 Query: 259 DLRGTIQALPEVISIMRNRGYTFVTVPQLLQI 290 DL GTI ALP++I+ +RN+GY+FVT+P +L + Sbjct: 263 DLTGTIDALPDIITELRNKGYSFVTLPDMLNV 294 >B1DJ57.1 B1DJ57_9BACL Polysaccharide deacetylase Length = 267 Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 106/219 (48%), Positives = 141/219 (64%), Gaps = 2/219 (0%) Query: 78 LTLSQLLRKYPETIKTRGP-HRKQIALTFDDVPDPRFTPQVLDVLRRYHVHATFFIVGSR 136 ++ ++ +++P T GP + K+IALTFDD PDPRFTPQ+LDVL Y + ATFF+VGSR Sbjct: 47 MSWVKMHKQFPNTFILSGPRNAKRIALTFDDAPDPRFTPQILDVLASYDICATFFVVGSR 106 Query: 137 AEKHPGLVARMIREGHTVGNHSYNHPQFGKISVNAFRTQIIRTENIIKTTAGYKPRLIRP 196 A KHP LV R+ REGHTVGNHSYNH +++ F TQI RT+ I+ GY PR IRP Sbjct: 107 AVKHPALVRRIHREGHTVGNHSYNHAVLSQLNSREFHTQIWRTDAIVSNIIGYHPRFIRP 166 Query: 197 PYGDISEPQLKWAKAHGYKLVNWNVDSLDWKGLSKSQ-VRXXXXXXXXXXXXXLQHXXXX 255 PYG++ Q+ W+ GY +VNW+VDS+DW+ S V LQH Sbjct: 167 PYGEMRPDQVAWSGKSGYTVVNWDVDSVDWRNNPNSSIVLHNIKKTLQPGSIVLQHAGGG 226 Query: 256 XXSDLRGTIQALPEVISIMRNRGYTFVTVPQLLQINKEK 294 DL GTI+ALP +I+ +R +GY FVT+P+LL + +K Sbjct: 227 YGQDLSGTIEALPVLITQLRKKGYKFVTLPELLNKSADK 265 >B1D8V3.1 B1D8V3_9BACL Polysaccharide deacetylase Length = 286 Score = 208 bits (529), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 99/214 (46%), Positives = 135/214 (63%), Gaps = 1/214 (0%) Query: 78 LTLSQLLRKYPETIKTRGPHR-KQIALTFDDVPDPRFTPQVLDVLRRYHVHATFFIVGSR 136 LTL++L KY T +G + K++ALTFDD PD FTP VLD L++ V ATFF+VG+R Sbjct: 72 LTLAELREKYKSTFLLQGSSKEKRVALTFDDGPDETFTPLVLDELKKAGVKATFFVVGNR 131 Query: 137 AEKHPGLVARMIREGHTVGNHSYNHPQFGKISVNAFRTQIIRTENIIKTTAGYKPRLIRP 196 E +P + RM+ +GH +GNHSY+HP F K+S FR +I +T+ +IKT GY P LIRP Sbjct: 132 IEANPDIFQRMVSDGHAIGNHSYSHPNFLKLSDEKFRGEIEKTDRLIKTYIGYLPTLIRP 191 Query: 197 PYGDISEPQLKWAKAHGYKLVNWNVDSLDWKGLSKSQVRXXXXXXXXXXXXXLQHXXXXX 256 PYG +SE Q+ W + K++NWNVDSLDWKGL+ +V LQH Sbjct: 192 PYGGVSEDQINWLASMEKKIINWNVDSLDWKGLNADEVYANIMDAAKNGSIILQHSAGGD 251 Query: 257 XSDLRGTIQALPEVISIMRNRGYTFVTVPQLLQI 290 DL GT++AL VI+ ++ + VTVP L+ + Sbjct: 252 GEDLTGTVEALGRVIAKLKEKNMELVTVPDLIHL 285 >C3GZT1.1 C3GZT1_BACTU Peptidoglycan N-acetylglucosamine deacetylase Length = 275 Score = 194 bits (494), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 89/201 (44%), Positives = 132/201 (65%), Gaps = 3/201 (1%) Query: 95 GPHRK-QIALTFDDVPDPRFTPQVLDVLRRYHVHATFFIVGSRAEKHPGLVARMIREGHT 153 GP+ K ++ALTFDD PD FTP++LD L++++V ATFF++G AEK P +V R+ EGH Sbjct: 76 GPYNKAEVALTFDDGPDLEFTPKILDKLKQHNVKATFFLLGENAEKFPNVVKRIANEGHV 135 Query: 154 VGNHSYNHPQFGKISVNAFRTQIIRTENIIKTTAGYKPRLIRPPYGDISEPQLKWAKAHG 213 +GNH+Y+HP K++ + +R QII+TE I+ AGY P+ IRPPYG+I E QLKWA Sbjct: 136 IGNHTYSHPNLAKVNEDEYRNQIIKTEEILNRLAGYAPKFIRPPYGEILENQLKWATEQN 195 Query: 214 YKLVNWNVDSLDWKGLSKSQVRXXXXXXXXXXXXXLQHXXXXXXSDLRGTIQALPEVISI 273 + +V W+VD++DWKG+S + LQH L+G++ AL ++IS Sbjct: 196 FMIVQWSVDTVDWKGVSADTITNNVLGNSFPGSVILQH--STPGGHLQGSVDALDKIISQ 253 Query: 274 MRNRGYTFVTVPQLLQINKEK 294 ++ +G FVT+P + Q +KE+ Sbjct: 254 LKTKGARFVTLPSMFQTSKER 274 >A9VQS7.1 A9VQS7_BACWK Polysaccharide deacetylase Length = 276 Score = 194 bits (493), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 90/201 (44%), Positives = 130/201 (64%), Gaps = 3/201 (1%) Query: 95 GPHRK-QIALTFDDVPDPRFTPQVLDVLRRYHVHATFFIVGSRAEKHPGLVARMIREGHT 153 GP+ K ++ALTFDD PD FTP++LD L++Y+V ATFF++G AEK P +V R+ EGH Sbjct: 77 GPYNKAEVALTFDDGPDLVFTPKILDKLKQYNVKATFFLLGENAEKFPNVVKRIANEGHV 136 Query: 154 VGNHSYNHPQFGKISVNAFRTQIIRTENIIKTTAGYKPRLIRPPYGDISEPQLKWAKAHG 213 +GNH+YNHP K++ +R QII+TE I+ AGY P+ IRPPYG+I E QLKWA Sbjct: 137 IGNHTYNHPNLAKVNEAEYRNQIIKTEEILNRLAGYAPKFIRPPYGEILENQLKWATEQN 196 Query: 214 YKLVNWNVDSLDWKGLSKSQVRXXXXXXXXXXXXXLQHXXXXXXSDLRGTIQALPEVISI 273 + +V W+VD++DWKG+S + LQH L+G++ AL ++I Sbjct: 197 FMIVQWSVDTVDWKGVSADTITNNVLGNSFPGSVILQH--STPGGHLQGSVDALDKIIPQ 254 Query: 274 MRNRGYTFVTVPQLLQINKEK 294 ++ +G FVT+P + Q +KE+ Sbjct: 255 LKTKGARFVTLPSMFQTSKER 275 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,506,789,462 Number of extensions: 53560426 Number of successful extensions: 108262 Number of sequences better than 1.0e-05: 2519 Number of HSP's gapped: 105362 Number of HSP's successfully gapped: 2524 Length of query: 294 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 160 Effective length of database: 1,798,280,193 Effective search space: 287724830880 Effective search space used: 287724830880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)