BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0013.p (227 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6K8.1 B3K6K8_9BACI 3D domain protein 226 1e-57 B1DJ58.1 B1DJ58_9BACL 3D domain protein 153 9e-36 A1HTB9.1 A1HTB9_9FIRM 3D domain protein 95 5e-18 A8SJI6.1 A8SJI6_9FIRM Putative uncharacterized protein 86 3e-15 C2S4V6.1 C2S4V6_BACCE 3D domain protein 85 5e-15 >B3K6K8.1 B3K6K8_9BACI 3D domain protein Length = 243 Score = 226 bits (576), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 117/197 (59%), Positives = 139/197 (70%), Gaps = 1/197 (0%) Query: 32 QADSVHIAGETTTYYTLSNHYGISMDKXXXXXXXXXXXXXYPGLKLAIPGIMKTQALASV 91 A SVH+A T+Y LS YG++MDK Y GLK+ IPG + + AS Sbjct: 47 HASSVHVAKNGDTFYFLSKQYGVNMDKLMKANPTIKATNIYQGLKINIPGTVSMNSAASA 106 Query: 92 EPAAKA-SGEASLLSVEPQTNTVQAWGKEYSYDRVLQVKATAYSSAASENGKWGAVDYFG 150 P A SG L+V PQ N V+AWGK ++Y + L VKATAYSSAASENG WGAVDYFG Sbjct: 107 APIAPGNSGFTPSLNVIPQNNVVEAWGKTFNYSKTLSVKATAYSSAASENGGWGAVDYFG 166 Query: 151 NPLKLGTIAVDPSVIPLGTKVLVTGYSHPGLPKQAFIATATDMGSAIKGNRIDIFIPGSQ 210 N LKLGTIAVDP VIPLGTKVLVTG+ HPGLPK+AF+A A D+G AIKGN+IDIFIPGSQ Sbjct: 167 NSLKLGTIAVDPKVIPLGTKVLVTGHEHPGLPKKAFVAEARDIGGAIKGNKIDIFIPGSQ 226 Query: 211 SYVADFGFQYVQLYMIE 227 S V FG Q ++L++I+ Sbjct: 227 SSVNQFGIQDIKLFIID 243 >B1DJ58.1 B1DJ58_9BACL 3D domain protein Length = 218 Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 91/208 (43%), Positives = 127/208 (61%), Gaps = 3/208 (1%) Query: 21 GISTLVQAAPVQADS-VHIAGETTTYYTLSNHYGISMDKXXXXXXXXXXXXXYPGLKLAI 79 G+S + V A S H A E T++ LS Y +S+DK Y GLK+ I Sbjct: 13 GLSLIFATGSVHAASKSHTAVEGDTFWKLSQKYSVSVDKLMKANAKIDPMNIYAGLKIVI 72 Query: 80 PGIMKTQALASVEPAAKASGEASLLSVEPQTNTVQAWGKEYSYDRVLQVKATAYSSAASE 139 P + AKA+ A +V Q+ T +A G +++ + L ++ATAYS ASE Sbjct: 73 PTTTTATTAKTTTTTAKAA-AAKAATVTAQSVTDKA-GTIHTFSKQLSIQATAYSGDASE 130 Query: 140 NGKWGAVDYFGNPLKLGTIAVDPSVIPLGTKVLVTGYSHPGLPKQAFIATATDMGSAIKG 199 NG W +DYFGN LK+GT+AVDP VIPLGTK+ +TGY+ GLP IATA+D+G AIKG Sbjct: 131 NGGWAGLDYFGNKLKVGTVAVDPKVIPLGTKLYITGYNSDGLPTGGMIATASDVGGAIKG 190 Query: 200 NRIDIFIPGSQSYVADFGFQYVQLYMIE 227 NRIDI++PG+ + V +FG Q V++Y+++ Sbjct: 191 NRIDIYLPGTPAEVNNFGIQNVKVYVLK 218 >A1HTB9.1 A1HTB9_9FIRM 3D domain protein Length = 246 Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 12/122 (9%) Query: 108 PQT--NTVQAWGKEYSYDRVLQVKATAYSSAASENGKWGAVDYFGNPLKLGTIAVDPSVI 165 PQ+ N G +Y RVL++ ATAY+ +NGKWG Y G ++ G AVDP+VI Sbjct: 135 PQSVRNNNSLMGAPQNYKRVLEMTATAYAPGPLDNGKWGDKTYMGGKVRKGVAAVDPNVI 194 Query: 166 PLGTKVLVTGYSHPGLPKQAFIATATDMGSAIKGNRIDIFIPGSQSYVADFGFQYVQLYM 225 P+GT++ V GY A A D GSAIKGNRID+ ++S D+G Q V++Y+ Sbjct: 195 PMGTRLWVEGYGE---------AIAEDQGSAIKGNRIDLAF-NTRSEALDYGIQKVKVYV 244 Query: 226 IE 227 +E Sbjct: 245 LE 246 >A8SJI6.1 A8SJI6_9FIRM Putative uncharacterized protein Length = 505 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/110 (40%), Positives = 68/110 (61%), Gaps = 11/110 (10%) Query: 118 KEYSYDRVLQVKATAYSSAASENGKWGAVDYFGNPLKLGTIAVDPSVIPLGTKVLVTGYS 177 + + Y +VL + AT+Y++ SENG +G G PL+ G +AVDP VIPLGTK+ + GY Sbjct: 407 RSFDYSKVLVMNATSYTNDPSENGGYGTT-RLGTPLRYGVVAVDPKVIPLGTKLYIEGYG 465 Query: 178 HPGLPKQAFIATATDMGSAIKGNRIDIFIPGSQSYVADFGFQYVQLYMIE 227 + A A D G AIKGNRID+ S++ +FG + V++Y+++ Sbjct: 466 Y---------AVAEDTGGAIKGNRIDLCFT-SRAQADNFGRRNVKVYILK 505 >C2S4V6.1 C2S4V6_BACCE 3D domain protein Length = 250 Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 62/156 (39%), Positives = 79/156 (50%), Gaps = 28/156 (17%) Query: 82 IMKTQALASVEPAAKASGEA----SLLSVEPQTNTVQAWGKEYSYDRVLQVKATAYSSAA 137 I K + A AKA EA +L + E N Q S R L V ATAY++ Sbjct: 112 IAKAKEEAKAREIAKAKEEAKAREALKAKEESKNNAQ------SAKRELTVVATAYTADP 165 Query: 138 SENGKWGAV-------DYFGNPLKLGTIAVDPSVIPLGTKVLVTGYSHPGLPKQAFIATA 190 SENG +G D NP + IAVDP VIPLG+KV V GY A A Sbjct: 166 SENGTYGGRVLTAMGHDLTANP-NMRIIAVDPKVIPLGSKVWVEGYGE---------AIA 215 Query: 191 TDMGSAIKGNRIDIFIPGSQSYVADFGFQYVQLYMI 226 D GSAIKGNRID+ + GS+S ++G Q V++ ++ Sbjct: 216 GDTGSAIKGNRIDVLM-GSKSKAMNWGRQTVKVKIL 250 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.132 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,125,870,227 Number of extensions: 40440723 Number of successful extensions: 97979 Number of sequences better than 1.0e-05: 562 Number of HSP's gapped: 97512 Number of HSP's successfully gapped: 562 Length of query: 227 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 96 Effective length of database: 1,826,543,238 Effective search space: 175348150848 Effective search space used: 175348150848 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)