BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0402.0009.p
         (83 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K6K9.1 B3K6K9_9BACI Glutamine ABC transporter ATP-binding protein   148   1e-34
B7GMP1.1 B7GMP1_ANOFW ABC-type glutamine transport system, ATPas...   145   1e-33
B1DH73.1 B1DH73_9BACL ABC transporter related                         144   3e-33
C0Z9S3.1 C0Z9S3_BREBN Glutamine ABC transporter ATP binding protein   143   5e-33
B4BPF3.1 B4BPF3_9BACI ABC transporter-related protein                 142   8e-33

>B3K6K9.1 B3K6K9_9BACI Glutamine ABC transporter ATP-binding protein
          Length = 88

 Score =  148 bits (374), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/83 (89%), Positives = 77/83 (92%)

Query: 1  MLFDEPTSALDPEMVGEVLEVMKKLAEDGMTMVIVTHEMGFAREVGDRILFMDGGIIVEE 60
          MLFDEPTSALDPEMVGEVLEVMKKLAE GMTMVIVTHEMGFAREVGDRILFMDGG IVEE
Sbjct: 6  MLFDEPTSALDPEMVGEVLEVMKKLAEGGMTMVIVTHEMGFAREVGDRILFMDGGKIVEE 65

Query: 61 GDPSQVFGNPQHARTKDFLSKVL 83
          G P Q+FGNP H RT++FLSKVL
Sbjct: 66 GTPDQLFGNPTHPRTQEFLSKVL 88


>B7GMP1.1 B7GMP1_ANOFW ABC-type glutamine transport system, ATPase component
          Length = 240

 Score =  145 bits (366), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/83 (83%), Positives = 76/83 (91%)

Query: 1   MLFDEPTSALDPEMVGEVLEVMKKLAEDGMTMVIVTHEMGFAREVGDRILFMDGGIIVEE 60
           MLFDEPTSALDPEMVGEVL VMK+LA++GMTMV+VTHEMGFAREVGDR+LFMDGG+IVEE
Sbjct: 158 MLFDEPTSALDPEMVGEVLAVMKQLAKEGMTMVVVTHEMGFAREVGDRVLFMDGGVIVEE 217

Query: 61  GDPSQVFGNPQHARTKDFLSKVL 83
           G P Q+F  PQH RTK FLSKVL
Sbjct: 218 GMPQQIFDAPQHERTKSFLSKVL 240


>B1DH73.1 B1DH73_9BACL ABC transporter related
          Length = 240

 Score =  144 bits (362), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/83 (81%), Positives = 77/83 (92%)

Query: 1   MLFDEPTSALDPEMVGEVLEVMKKLAEDGMTMVIVTHEMGFAREVGDRILFMDGGIIVEE 60
           MLFDEPTSALDPEMVGEVL+VMK LA++GMTMVIVTHEMGFAREVGDR+LF+DGG IVE+
Sbjct: 158 MLFDEPTSALDPEMVGEVLDVMKSLAKEGMTMVIVTHEMGFAREVGDRLLFIDGGQIVEQ 217

Query: 61  GDPSQVFGNPQHARTKDFLSKVL 83
           G P +VF NP+H RTK+FLSKVL
Sbjct: 218 GPPREVFANPRHPRTKEFLSKVL 240


>C0Z9S3.1 C0Z9S3_BREBN Glutamine ABC transporter ATP binding protein
          Length = 240

 Score =  143 bits (360), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 66/83 (79%), Positives = 76/83 (91%)

Query: 1   MLFDEPTSALDPEMVGEVLEVMKKLAEDGMTMVIVTHEMGFAREVGDRILFMDGGIIVEE 60
           MLFDEPTSALDPEMVGEVL+VMK LA++GMTMV+VTHEMGFAREV DR++FMDGG IVEE
Sbjct: 158 MLFDEPTSALDPEMVGEVLQVMKDLAKEGMTMVVVTHEMGFAREVADRVIFMDGGYIVEE 217

Query: 61  GDPSQVFGNPQHARTKDFLSKVL 83
           G P+++F NPQH RT+ FLSKVL
Sbjct: 218 GTPAEIFDNPQHERTRAFLSKVL 240


>B4BPF3.1 B4BPF3_9BACI ABC transporter-related protein
          Length = 149

 Score =  142 bits (359), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 69/83 (83%), Positives = 73/83 (87%)

Query: 1   MLFDEPTSALDPEMVGEVLEVMKKLAEDGMTMVIVTHEMGFAREVGDRILFMDGGIIVEE 60
           MLFDEPTSALDPEMVGEVL VMK+LA +GMTMVIVTHEMGFAREVGDR+LFMDGG IVEE
Sbjct: 67  MLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVIVTHEMGFAREVGDRVLFMDGGYIVEE 126

Query: 61  GDPSQVFGNPQHARTKDFLSKVL 83
           G P  +F  PQH RTK FLSKVL
Sbjct: 127 GKPGDLFDRPQHERTKAFLSKVL 149


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.139    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 506,044,903
Number of extensions: 17060642
Number of successful extensions: 192536
Number of sequences better than 1.0e-05: 15516
Number of HSP's gapped: 201756
Number of HSP's successfully gapped: 16318
Length of query: 83
Length of database: 3,060,696,203
Length adjustment: 53
Effective length of query: 30
Effective length of database: 2,561,382,408
Effective search space: 76841472240
Effective search space used: 76841472240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)