BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0008.p (159 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1I9V0.1 C1I9V0_9CLOT Amino acid ABC transporter 206 7e-52 C4ID41.1 C4ID41_CLOBU Glutamine transport ATP-binding protein GlnQ 206 7e-52 B1QWQ6.1 B1QWQ6_CLOBU Glutamine transport ATP-binding protein GlnQ 206 7e-52 B8I6S3.1 B8I6S3_CLOCE ABC transporter related 203 3e-51 Q837F0.1 Q837F0_ENTFA Amino acid ABC transporter, ATP-binding pr... 201 1e-50 >C1I9V0.1 C1I9V0_9CLOT Amino acid ABC transporter Length = 240 Score = 206 bits (523), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 102/141 (72%), Positives = 114/141 (80%) Query: 1 MIAVKNLQKSFGKLEILKGIDLQIHKGEVVVVIGPSGSGKSTFLRCLNLLEQPTGGEITF 60 MI V NL K FG E+LKG++ I KGEVVVVIGPSGSGKSTFLRCLNLLE+PT GEI F Sbjct: 1 MIHVNNLHKYFGDNEVLKGVNDHIKKGEVVVVIGPSGSGKSTFLRCLNLLEEPTKGEIIF 60 Query: 61 EGASITDKRHDINVTREKMGMVFQQFNLFPHKTVLQNIMLAPLKVKKQQPAEAEKIALEL 120 EG +ITDK DIN REKMGMVFQQFNLFPHKTVL+NI +AP+ VK + AEAEKIA +L Sbjct: 61 EGQNITDKNIDINKIREKMGMVFQQFNLFPHKTVLENITIAPINVKNKSKAEAEKIAKDL 120 Query: 121 LQTVGLADKRDAYPAQLSGGQ 141 L VGL +K +AYPA LSGGQ Sbjct: 121 LVKVGLLEKANAYPASLSGGQ 141 >C4ID41.1 C4ID41_CLOBU Glutamine transport ATP-binding protein GlnQ Length = 240 Score = 206 bits (523), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 104/141 (73%), Positives = 114/141 (80%) Query: 1 MIAVKNLQKSFGKLEILKGIDLQIHKGEVVVVIGPSGSGKSTFLRCLNLLEQPTGGEITF 60 MI V NL KSFGK E+LKGID I KGEVVVVIGPSGSGKSTFLRCLNLLE PT G+ITF Sbjct: 1 MIYVNNLYKSFGKNEVLKGIDEHIAKGEVVVVIGPSGSGKSTFLRCLNLLETPTDGKITF 60 Query: 61 EGASITDKRHDINVTREKMGMVFQQFNLFPHKTVLQNIMLAPLKVKKQQPAEAEKIALEL 120 EG IT K +I+ REKMGMVFQQFNLFPHKTV +NI LAP+KV+K EA+K A+EL Sbjct: 61 EGKDITSKETNIDKMREKMGMVFQQFNLFPHKTVCENICLAPMKVRKLSKDEAKKKAIEL 120 Query: 121 LQTVGLADKRDAYPAQLSGGQ 141 L+ VGL DK DAYPA LSGGQ Sbjct: 121 LKKVGLEDKIDAYPASLSGGQ 141 >B1QWQ6.1 B1QWQ6_CLOBU Glutamine transport ATP-binding protein GlnQ Length = 240 Score = 206 bits (523), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 104/141 (73%), Positives = 114/141 (80%) Query: 1 MIAVKNLQKSFGKLEILKGIDLQIHKGEVVVVIGPSGSGKSTFLRCLNLLEQPTGGEITF 60 MI V NL KSFGK E+LKGID I KGEVVVVIGPSGSGKSTFLRCLNLLE PT G+ITF Sbjct: 1 MIYVNNLYKSFGKNEVLKGIDEHIAKGEVVVVIGPSGSGKSTFLRCLNLLETPTDGKITF 60 Query: 61 EGASITDKRHDINVTREKMGMVFQQFNLFPHKTVLQNIMLAPLKVKKQQPAEAEKIALEL 120 EG IT K +I+ REKMGMVFQQFNLFPHKTV +NI LAP+KV+K EA+K A+EL Sbjct: 61 EGKDITSKETNIDKMREKMGMVFQQFNLFPHKTVCENICLAPMKVRKLSKDEAKKKAIEL 120 Query: 121 LQTVGLADKRDAYPAQLSGGQ 141 L+ VGL DK DAYPA LSGGQ Sbjct: 121 LKKVGLEDKIDAYPASLSGGQ 141 >B8I6S3.1 B8I6S3_CLOCE ABC transporter related Length = 240 Score = 203 bits (517), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 95/141 (67%), Positives = 117/141 (82%) Query: 1 MIAVKNLQKSFGKLEILKGIDLQIHKGEVVVVIGPSGSGKSTFLRCLNLLEQPTGGEITF 60 MI VKNL K+FG L++L+GID+ I +GEVVVVIGPSGSGKSTFLRCLNLLEQPTGGEI F Sbjct: 1 MINVKNLHKTFGSLQVLRGIDVTIERGEVVVVIGPSGSGKSTFLRCLNLLEQPTGGEIIF 60 Query: 61 EGASITDKRHDINVTREKMGMVFQQFNLFPHKTVLQNIMLAPLKVKKQQPAEAEKIALEL 120 EG +ITDK +DIN R+KMGMVFQ FNLFPH +++ NI L P+K+K Q P +A++ A+ L Sbjct: 61 EGINITDKNNDINKQRQKMGMVFQNFNLFPHLSIIDNITLGPVKLKNQTPEQAKQNAMSL 120 Query: 121 LQTVGLADKRDAYPAQLSGGQ 141 L+ +GL +K + YPAQLSGGQ Sbjct: 121 LKRIGLEEKANNYPAQLSGGQ 141 >Q837F0.1 Q837F0_ENTFA Amino acid ABC transporter, ATP-binding protein Length = 240 Score = 201 bits (512), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 94/141 (66%), Positives = 118/141 (83%) Query: 1 MIAVKNLQKSFGKLEILKGIDLQIHKGEVVVVIGPSGSGKSTFLRCLNLLEQPTGGEITF 60 MI +KNLQK+FGK E+LKGIDL+I GEVVV+IGPSGSGKSTFLRCLNLLE PTGG + F Sbjct: 1 MINIKNLQKTFGKNEVLKGIDLEIEAGEVVVIIGPSGSGKSTFLRCLNLLETPTGGSVEF 60 Query: 61 EGASITDKRHDINVTREKMGMVFQQFNLFPHKTVLQNIMLAPLKVKKQQPAEAEKIALEL 120 EG ++ DK +I+ R+KMGMVFQ FNLFPHK VL+N+ ++P+KVKK+ +EA + AL L Sbjct: 61 EGKNLLDKNTNIDQLRQKMGMVFQNFNLFPHKNVLENLTISPVKVKKEAASEATEHALSL 120 Query: 121 LQTVGLADKRDAYPAQLSGGQ 141 L+ VGL+DK++ YP+QLSGGQ Sbjct: 121 LEQVGLSDKKENYPSQLSGGQ 141 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 862,010,153 Number of extensions: 33146010 Number of successful extensions: 332487 Number of sequences better than 1.0e-05: 57707 Number of HSP's gapped: 285224 Number of HSP's successfully gapped: 58361 Length of query: 159 Length of database: 3,060,696,203 Length adjustment: 120 Effective length of query: 39 Effective length of database: 1,930,174,403 Effective search space: 75276801717 Effective search space used: 75276801717 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)