BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0007.p (237 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6L1.1 B3K6L1_9BACI Polar amino acid ABC transporter, inner me... 263 7e-69 B1KUR6.1 B1KUR6_CLOBM Amino acid ABC transporter, permease prote... 216 1e-54 C3KY20.1 C3KY20_CLOB6 Amino acid ABC transporter, permease prote... 216 1e-54 B1QR31.1 B1QR31_CLOBO Amino acid ABC transporter, permease prote... 216 1e-54 B1INB1.1 B1INB1_CLOBK Amino acid ABC transporter, permease prote... 214 4e-54 >B3K6L1.1 B3K6L1_9BACI Polar amino acid ABC transporter, inner membrane subunit Length = 480 Score = 263 bits (673), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 125/220 (56%), Positives = 172/220 (78%) Query: 18 KMNVFDIAYEYRNFFLSGLKYTXXXXXXXXXXXXXXXIIVSLLRMSKLWILRFIATAWVE 77 +N F+ ++YR+++ G+++T +IV+L+RMS + IL+F+ATA++E Sbjct: 261 NLNTFEFFWKYRDYYAKGIQFTLLISALGVFFGFILGLIVALMRMSGVKILKFLATAYIE 320 Query: 78 FLRGTPMLVQLFLIHYGLPEFGLEFTPIQSGAITLTINSSAYLAEIFRAGIQGVDRGQVE 137 +RGTPMLVQLF+IHY L F ++F+PIQSG +TL+INS+AYLAEIFRAGIQGVDRGQ+E Sbjct: 321 IIRGTPMLVQLFIIHYSLAAFDIKFSPIQSGILTLSINSAAYLAEIFRAGIQGVDRGQLE 380 Query: 138 AARSLGMRQGMTMRYIVLPQAIKNVLPAIGNEFITIIKESSIVSMIGVADLLFEARSVTT 197 AARSLGM +G MR+I+LPQA+K VLPAIGNEF+ IIKESSIVS IGV D++++A+ + Sbjct: 381 AARSLGMTKGKAMRHIILPQALKGVLPAIGNEFVVIIKESSIVSFIGVFDIMYQAQILRG 440 Query: 198 ITYEGLNPLIVIAVMYFVLTFTLSKVLGLLERRLNTDDRR 237 T+ LNPL+V A++YF+LTF LSK+LG+ ER+L+ D R Sbjct: 441 STFAPLNPLLVAAMIYFILTFVLSKLLGVWERKLSASDNR 480 >B1KUR6.1 B1KUR6_CLOBM Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family Length = 228 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 113/226 (50%), Positives = 158/226 (69%), Gaps = 10/226 (4%) Query: 22 FDIAYEYRNFFLSGLKYTXXXXXXXXXXXXXXXIIVSLLRMSKLWILRFIATAWVEFLRG 81 F +Y +FF SG KYT +++SL+++SK IL++IA +++EF+RG Sbjct: 3 FSFLSKYYSFFTSGAKYTIILAFFTVVIGTILGLLLSLMKLSKNKILKYIAVSYIEFIRG 62 Query: 82 TPMLVQLFLIHYGLPEFGLEFTPIQ----------SGAITLTINSSAYLAEIFRAGIQGV 131 TP+LVQL++I+YGLP G+ F + +G + L+INS AY+AEI RAGIQ V Sbjct: 63 TPVLVQLYIIYYGLPTIGIRFPEVPILGSNFPDFFAGILALSINSGAYVAEIIRAGIQAV 122 Query: 132 DRGQVEAARSLGMRQGMTMRYIVLPQAIKNVLPAIGNEFITIIKESSIVSMIGVADLLFE 191 D+GQ+EAARSLGM + M M+ +++PQA KN+LPA+GNEFITIIKESSIVS+IG+ +L++ Sbjct: 123 DKGQMEAARSLGMSESMAMKNVIIPQAFKNILPALGNEFITIIKESSIVSIIGIHELMYN 182 Query: 192 ARSVTTITYEGLNPLIVIAVMYFVLTFTLSKVLGLLERRLNTDDRR 237 A +V + PL+V AVMYF+LTFTLSK+LG+ ERR+ DR Sbjct: 183 ADTVRGNIFRPFEPLLVAAVMYFILTFTLSKLLGVAERRMRVSDRN 228 >C3KY20.1 C3KY20_CLOB6 Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family Length = 228 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 111/226 (49%), Positives = 159/226 (70%), Gaps = 10/226 (4%) Query: 22 FDIAYEYRNFFLSGLKYTXXXXXXXXXXXXXXXIIVSLLRMSKLWILRFIATAWVEFLRG 81 F +Y +FF++G KYT +++SL+++SK IL++IA +++EF+RG Sbjct: 3 FSFLSKYSSFFINGAKYTIILAFFTVVIGSVLGLLLSLMKLSKNKILKYIAVSYIEFIRG 62 Query: 82 TPMLVQLFLIHYGLPEFGLEFTPIQ----------SGAITLTINSSAYLAEIFRAGIQGV 131 TP+LVQL++I+YGLP G+ F + +G + L+INS AY+AEI RAGIQ V Sbjct: 63 TPVLVQLYIIYYGLPTIGIRFPEVPILGSNFPDFFAGILALSINSGAYVAEIIRAGIQAV 122 Query: 132 DRGQVEAARSLGMRQGMTMRYIVLPQAIKNVLPAIGNEFITIIKESSIVSMIGVADLLFE 191 D+GQ+EAARSLGM + M M+ +++PQA KN+LPA+GNEFITIIKESSIVS+IG+ +L++ Sbjct: 123 DKGQMEAARSLGMSESMAMKNVIIPQAFKNILPALGNEFITIIKESSIVSIIGIHELMYN 182 Query: 192 ARSVTTITYEGLNPLIVIAVMYFVLTFTLSKVLGLLERRLNTDDRR 237 A +V + PL+V AVMYF++TFTLSK+LG+ ERR+ DR Sbjct: 183 ADTVRGNIFRPFEPLLVAAVMYFIMTFTLSKLLGVAERRMRVSDRN 228 >B1QR31.1 B1QR31_CLOBO Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family Length = 228 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 111/226 (49%), Positives = 159/226 (70%), Gaps = 10/226 (4%) Query: 22 FDIAYEYRNFFLSGLKYTXXXXXXXXXXXXXXXIIVSLLRMSKLWILRFIATAWVEFLRG 81 F +Y +FF++G KYT +++SL+++SK IL++IA +++EF+RG Sbjct: 3 FSFLSKYSSFFINGAKYTIILAFFTVVIGSVLGLLLSLMKLSKNKILKYIAVSYIEFIRG 62 Query: 82 TPMLVQLFLIHYGLPEFGLEFTPIQ----------SGAITLTINSSAYLAEIFRAGIQGV 131 TP+LVQL++I+YGLP G+ F + +G + L+INS AY+AEI RAGIQ V Sbjct: 63 TPVLVQLYIIYYGLPTIGIRFPEVPILGSNFPDFFAGILALSINSGAYVAEIIRAGIQAV 122 Query: 132 DRGQVEAARSLGMRQGMTMRYIVLPQAIKNVLPAIGNEFITIIKESSIVSMIGVADLLFE 191 D+GQ+EAARSLGM + M M+ +++PQA KN+LPA+GNEFITIIKESSIVS+IG+ +L++ Sbjct: 123 DKGQMEAARSLGMSESMAMKNVIIPQAFKNILPALGNEFITIIKESSIVSIIGIHELMYN 182 Query: 192 ARSVTTITYEGLNPLIVIAVMYFVLTFTLSKVLGLLERRLNTDDRR 237 A +V + PL+V AVMYF++TFTLSK+LG+ ERR+ DR Sbjct: 183 ADTVRGNIFRPFEPLLVAAVMYFIMTFTLSKLLGVAERRMRVSDRN 228 >B1INB1.1 B1INB1_CLOBK Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family Length = 228 Score = 214 bits (546), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 112/226 (49%), Positives = 158/226 (69%), Gaps = 10/226 (4%) Query: 22 FDIAYEYRNFFLSGLKYTXXXXXXXXXXXXXXXIIVSLLRMSKLWILRFIATAWVEFLRG 81 F +Y +FF SG KYT +++SL+++SK IL++IA +++EF+RG Sbjct: 3 FSFLSKYYSFFTSGAKYTIILAFFTVVIGTILGLLLSLMKLSKNKILKYIAVSYIEFIRG 62 Query: 82 TPMLVQLFLIHYGLPEFGLEFTPIQ----------SGAITLTINSSAYLAEIFRAGIQGV 131 TP+LVQL++I+YGLP G+ F + +G + L+INS AY+AEI RAGIQ V Sbjct: 63 TPVLVQLYIIYYGLPTIGIRFPEVPILGSNFPDFFAGILALSINSGAYVAEIIRAGIQAV 122 Query: 132 DRGQVEAARSLGMRQGMTMRYIVLPQAIKNVLPAIGNEFITIIKESSIVSMIGVADLLFE 191 D+GQ+EAARSLGM + M M+ +++PQA KN+LPA+GNEFITIIKESSIVS+IG+ +L++ Sbjct: 123 DKGQMEAARSLGMSESMAMKNVIIPQAFKNILPALGNEFITIIKESSIVSIIGIHELMYN 182 Query: 192 ARSVTTITYEGLNPLIVIAVMYFVLTFTLSKVLGLLERRLNTDDRR 237 A +V + PL+V A+MYF+LTFTLSK+LG+ ERR+ DR Sbjct: 183 ADTVRGNIFRPFEPLLVAALMYFILTFTLSKLLGVAERRMRVSDRN 228 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.144 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,140,932,014 Number of extensions: 39385467 Number of successful extensions: 163503 Number of sequences better than 1.0e-05: 7662 Number of HSP's gapped: 157975 Number of HSP's successfully gapped: 7674 Length of query: 237 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 105 Effective length of database: 1,817,122,223 Effective search space: 190797833415 Effective search space used: 190797833415 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 129 (54.3 bits)