BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0006.p (327 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6L1.1 B3K6L1_9BACI Polar amino acid ABC transporter, inner me... 249 2e-64 B1KUR7.1 B1KUR7_CLOBM Polar amino acid uptake ABC transporter, P... 234 1e-59 B1INB2.1 B1INB2_CLOBK Polar amino acid uptake ABC transporter, P... 233 2e-59 C1FPS0.1 C1FPS0_CLOBJ Polar amino acid uptake ABC transporter, P... 233 2e-59 B1DH71.1 B1DH71_9BACL Extracellular solute-binding protein family 3 232 4e-59 >B3K6L1.1 B3K6L1_9BACI Polar amino acid ABC transporter, inner membrane subunit Length = 480 Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 126/217 (58%), Positives = 164/217 (75%), Gaps = 1/217 (0%) Query: 109 DFPPYEFHKVVDGKDTIVGFDIEIAKEIAADMGAKLEIKDLSFDSLLNELSSGRVDMVIS 168 D+ PYEFHK +DG DTIVGFDI+IAKEIA D+GA+L IKD SFD+LL EL+SGRVD VIS Sbjct: 39 DYAPYEFHKTIDGVDTIVGFDIDIAKEIAKDLGAELIIKDTSFDALLPELTSGRVDFVIS 98 Query: 169 GLSPTPERAKAVGLSDIYYKAEQAVVVREADKDKFATMDSLKGIKLGVQTGSIQEDIAKG 228 G++PT +R K++ S+ YY AEQ+VVVR+ D KF T++SL+G ++GVQ SIQE IAK Sbjct: 99 GMNPTEDRRKSIDFSEPYYAAEQSVVVRKEDALKFNTLESLEGARIGVQKSSIQESIAKT 158 Query: 229 IEGAQLTSLGKISEIVLQLQSNRVDASIMEGPVAKSFVKNVKGLAITDAKPEVEDDGYVI 288 I A + SL KI +++LQL+S RVD + E P+AK+ + N +AITDAKP E+D Y I Sbjct: 159 IPNANVVSLDKIPDLLLQLESERVDVVLAEYPIAKTNM-NEATMAITDAKPTAENDAYAI 217 Query: 289 GVKKGNDELLGQVNKTLARLNSEGKIDEYVAAASELA 325 GV+KGN+ELLG +N TL RL +I ++V AS+LA Sbjct: 218 GVRKGNEELLGSINATLERLKENNQIQKFVDDASDLA 254 >B1KUR7.1 B1KUR7_CLOBM Polar amino acid uptake ABC transporter, PAAT family, amino acid-binding protein Length = 272 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 116/219 (52%), Positives = 162/219 (73%), Gaps = 1/219 (0%) Query: 109 DFPPYEFHKVVDGKDTIVGFDIEIAKEIAADMGAKLEIKDLSFDSLLNELSSGRVDMVIS 168 D+PPYEFHK ++GKD IVGFDI IAKEIA D+G KLEIKD+ FD LL L SG VD+VI+ Sbjct: 54 DYPPYEFHKTINGKDEIVGFDITIAKEIAKDLGVKLEIKDMKFDGLLAALQSGNVDIVIA 113 Query: 169 GLSPTPERAKAVGLSDIYYKAEQAVVVREADKDKFATMDSLKGIKLGVQTGSIQEDIAKG 228 G++PT +R K+V S IYY+A Q+VVVR DKDKF ++D KG K+GVQ G+ QE++AK Sbjct: 114 GMNPTEDRKKSVDFSKIYYQAIQSVVVRAEDKDKFKSLDEFKGKKIGVQKGTTQEEVAKK 173 Query: 229 -IEGAQLTSLGKISEIVLQLQSNRVDASIMEGPVAKSFVKNVKGLAITDAKPEVEDDGYV 287 + +++ SLGK++++VL+LQ+ +VD ++E PVA S+ KN K LA+++ K E +D G Sbjct: 174 EMTNSEIKSLGKVTDLVLELQNKKVDGLVLENPVAVSYAKNGKNLAVSNIKFENKDKGAS 233 Query: 288 IGVKKGNDELLGQVNKTLARLNSEGKIDEYVAAASELAE 326 + VKKGN +L+ ++KTL +L E ID++V AS+ E Sbjct: 234 VAVKKGNKDLVDAIDKTLDKLIKEKSIDKFVTDASKQVE 272 >B1INB2.1 B1INB2_CLOBK Polar amino acid uptake ABC transporter, PAAT family, amino acid-binding protein Length = 272 Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 116/219 (52%), Positives = 162/219 (73%), Gaps = 1/219 (0%) Query: 109 DFPPYEFHKVVDGKDTIVGFDIEIAKEIAADMGAKLEIKDLSFDSLLNELSSGRVDMVIS 168 D+PPYEFHK ++GKD IVGFDI IAKEIA D+G KLEIKD+ FD LL L SG VD+VI+ Sbjct: 54 DYPPYEFHKTINGKDEIVGFDITIAKEIAKDLGVKLEIKDMKFDGLLAALQSGNVDIVIA 113 Query: 169 GLSPTPERAKAVGLSDIYYKAEQAVVVREADKDKFATMDSLKGIKLGVQTGSIQEDIAKG 228 G++PT +R K+V S IYY+A Q+VVVR DKDKF ++D KG K+GVQ G+ QE++AK Sbjct: 114 GMNPTEDRKKSVDFSKIYYQAIQSVVVRAEDKDKFKSLDEFKGKKIGVQKGTTQEEVAKK 173 Query: 229 -IEGAQLTSLGKISEIVLQLQSNRVDASIMEGPVAKSFVKNVKGLAITDAKPEVEDDGYV 287 + +++ SLGK++++VL+LQ+ +VD ++E PVA S+ KN K LA+++ K E +D G Sbjct: 174 EMTNSEIKSLGKVTDLVLELQNKKVDGLVLENPVAVSYAKNGKNLAVSNIKFENKDKGAS 233 Query: 288 IGVKKGNDELLGQVNKTLARLNSEGKIDEYVAAASELAE 326 + VKKGN +L+ ++KTL +L E ID++V AS+ E Sbjct: 234 VAVKKGNKDLVDAIDKTLDKLIKEKSIDKFVTDASKEVE 272 >C1FPS0.1 C1FPS0_CLOBJ Polar amino acid uptake ABC transporter, PAAT family, amino acid-binding protein Length = 272 Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 115/219 (52%), Positives = 162/219 (73%), Gaps = 1/219 (0%) Query: 109 DFPPYEFHKVVDGKDTIVGFDIEIAKEIAADMGAKLEIKDLSFDSLLNELSSGRVDMVIS 168 D+PPYEFHK ++GKD IVGFDI IAKEIA D+G KLEIKD+ FD LL L SG VD+VI+ Sbjct: 54 DYPPYEFHKTINGKDEIVGFDITIAKEIAKDLGVKLEIKDMKFDGLLAALQSGNVDIVIA 113 Query: 169 GLSPTPERAKAVGLSDIYYKAEQAVVVREADKDKFATMDSLKGIKLGVQTGSIQEDIAKG 228 G++PT +R K+V S IYY+A Q++VVR DKDKF ++D KG K+GVQ G+ QE++AK Sbjct: 114 GMNPTEDRKKSVDFSKIYYQAIQSIVVRAEDKDKFKSLDEFKGKKIGVQKGTTQEEVAKK 173 Query: 229 -IEGAQLTSLGKISEIVLQLQSNRVDASIMEGPVAKSFVKNVKGLAITDAKPEVEDDGYV 287 + +++ SLGK++++VL+LQ+ +VD ++E PVA S+ KN K LA+++ K E +D G Sbjct: 174 EMTNSEIKSLGKVTDLVLELQNKKVDGLVLENPVAVSYAKNGKNLAVSNIKFENKDKGAS 233 Query: 288 IGVKKGNDELLGQVNKTLARLNSEGKIDEYVAAASELAE 326 + VKKGN +L+ ++KTL +L E ID++V AS+ E Sbjct: 234 VAVKKGNKDLVDAIDKTLDKLIKEKSIDKFVTDASKEVE 272 >B1DH71.1 B1DH71_9BACL Extracellular solute-binding protein family 3 Length = 286 Score = 232 bits (591), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 115/219 (52%), Positives = 159/219 (72%) Query: 109 DFPPYEFHKVVDGKDTIVGFDIEIAKEIAADMGAKLEIKDLSFDSLLNELSSGRVDMVIS 168 ++ PYEFHK VDGKD IVGFDIEIAKE+A D+G LEIKD+ F +LL EL G++D VI+ Sbjct: 68 EYAPYEFHKNVDGKDQIVGFDIEIAKEVAKDLGVDLEIKDMDFGNLLAELKLGKIDFVIA 127 Query: 169 GLSPTPERAKAVGLSDIYYKAEQAVVVREADKDKFATMDSLKGIKLGVQTGSIQEDIAKG 228 G++P ERAKAV S +YY+A+Q V+VR DKDKF TM L+G +GVQ GS QE IA+G Sbjct: 128 GMTPDEERAKAVDFSKVYYEAKQGVLVRAEDKDKFTTMADLEGKAIGVQMGSTQEKIAQG 187 Query: 229 IEGAQLTSLGKISEIVLQLQSNRVDASIMEGPVAKSFVKNVKGLAITDAKPEVEDDGYVI 288 I+GA+L SLGK +++VL+L+S +VDA I+E PVA+ + LA+T PE E G + Sbjct: 188 IKGAKLKSLGKTTDLVLELKSKKVDALIVELPVAQGYANVNSDLALTSISPEYESGGSAV 247 Query: 289 GVKKGNDELLGQVNKTLARLNSEGKIDEYVAAASELAEK 327 V KG +LL ++ KTL L ++ KID++V+ ++++E+ Sbjct: 248 AVNKGEKDLLAEIQKTLDHLTADKKIDQWVSEMTQISEQ 286 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.134 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,622,949,288 Number of extensions: 60449604 Number of successful extensions: 143092 Number of sequences better than 1.0e-05: 4752 Number of HSP's gapped: 139835 Number of HSP's successfully gapped: 4824 Length of query: 327 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 191 Effective length of database: 1,779,438,163 Effective search space: 339872689133 Effective search space used: 339872689133 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)