BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0402.0004.p
         (50 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K6L3.1 B3K6L3_9BACI Glycogen/starch synthase, ADP-glucose type       72   2e-11
B4BQ07.1 B4BQ07_9BACI Glycogen/starch synthase, ADP-glucose type       59   1e-07
O08328.1 GLGA_BACST Glycogen synthase EC=2.4.1.21                      59   1e-07
A4IS20.1 GLGA_GEOTN Glycogen synthase EC=2.4.1.21                      59   2e-07
B1B7W4.1 B1B7W4_CLOBO Glycogen synthase EC=2.4.1.21                    58   3e-07

>B3K6L3.1 B3K6L3_9BACI Glycogen/starch synthase, ADP-glucose type
          Length = 477

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 37/46 (80%)

Query: 1   MMYTLRRAVSFYHKPEHWKKVTKNAFAGDYSWNVSAQQYMDIYNRI 46
           MM T+RRA S Y  PEHW+KV+KNA  GDYSWNVSA++Y +IY +I
Sbjct: 429 MMNTIRRATSIYRMPEHWRKVSKNALGGDYSWNVSAKEYQEIYQQI 474


>B4BQ07.1 B4BQ07_9BACI Glycogen/starch synthase, ADP-glucose type
          Length = 485

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 36/49 (73%)

Query: 1   MMYTLRRAVSFYHKPEHWKKVTKNAFAGDYSWNVSAQQYMDIYNRILEQ 49
           M+YT+RRA+SFY +P  W+++T+ A  GDYSW  SA QY   Y +++++
Sbjct: 429 MLYTIRRALSFYRQPSVWEQLTERAMRGDYSWRRSANQYKQAYEQLIKK 477


>O08328.1 GLGA_BACST Glycogen synthase EC=2.4.1.21
          Length = 485

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 36/49 (73%)

Query: 1   MMYTLRRAVSFYHKPEHWKKVTKNAFAGDYSWNVSAQQYMDIYNRILEQ 49
           M+YT+RRA+SFY +P  W+++T+ A  GDYSW  SA QY   Y +++++
Sbjct: 429 MLYTIRRALSFYRQPSVWEQLTERAMRGDYSWRRSANQYKQAYEQLIKK 477


>A4IS20.1 GLGA_GEOTN Glycogen synthase EC=2.4.1.21
          Length = 485

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 36/49 (73%)

Query: 1   MMYTLRRAVSFYHKPEHWKKVTKNAFAGDYSWNVSAQQYMDIYNRILEQ 49
           M+YT+RRA+SFY +P  W+++T+ A  GDYSW  SA QY   Y +++++
Sbjct: 429 MLYTIRRALSFYRQPSVWEQLTERAMRGDYSWRRSANQYKQAYEQLIKK 477


>B1B7W4.1 B1B7W4_CLOBO Glycogen synthase EC=2.4.1.21
          Length = 479

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 35/49 (71%)

Query: 1   MMYTLRRAVSFYHKPEHWKKVTKNAFAGDYSWNVSAQQYMDIYNRILEQ 49
           M+YT+RRA+ FY+  + W K+ K    GDYSW  +A +YM++Y++IL +
Sbjct: 430 MLYTIRRAIGFYYNKDVWNKLVKTGMNGDYSWEKAANRYMEVYSKILHK 478


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.129    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 302,106,621
Number of extensions: 7798847
Number of successful extensions: 22397
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 22447
Number of HSP's successfully gapped: 15
Length of query: 50
Length of database: 3,060,696,203
Length adjustment: 23
Effective length of query: 27
Effective length of database: 2,844,012,858
Effective search space: 76788347166
Effective search space used: 76788347166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)