BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0003.p (401 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6L3.1 B3K6L3_9BACI Glycogen/starch synthase, ADP-glucose type 591 e-167 B7AY32.1 B7AY32_9FIRM Putative uncharacterized protein 468 e-130 C4V5S1.1 C4V5S1_9FIRM Starch synthase EC=2.4.1.21 458 e-127 A4J4I4.1 GLGA_DESRM Glycogen synthase EC=2.4.1.21 456 e-126 Q2B4E0.1 Q2B4E0_9BACI Glycogen synthase EC=2.4.1.21 453 e-125 >B3K6L3.1 B3K6L3_9BACI Glycogen/starch synthase, ADP-glucose type Length = 477 Score = 591 bits (1523), Expect = e-167, Method: Compositional matrix adjust. Identities = 276/394 (70%), Positives = 328/394 (83%), Gaps = 2/394 (0%) Query: 1 MKVLFAAAEAHPFVKTGGLADVIGALPKALKGVGVDVRVILPKYRGIPEKFVSQMEHVAA 60 MK+LFAA+E P++KTGGLADVI ALPK+L+G+G D+RV+LPKYRGIPE++ +MEHV Sbjct: 1 MKLLFAASECGPYIKTGGLADVIAALPKSLRGMGEDIRVVLPKYRGIPEEYRERMEHVGE 60 Query: 61 LSVPVGWRNQYCGIERIIYDGIPVYFIDNEYYFGRDGIYGYMDDGERFSFFNRAVLECLE 120 V VGWR QYCGIE ++ DG+ +YF+DNEYYFGRDGIYGYMDDGERFSFFNRAVLE L Sbjct: 61 TRVRVGWREQYCGIESLVEDGVTIYFVDNEYYFGRDGIYGYMDDGERFSFFNRAVLEVLP 120 Query: 121 TLDFQPDVLHCHDWHAAVIPMLLQAHYRHNPFYAEIRTVFTIHNLLYQGVFPYSVLGELL 180 + FQPDVLHCHDWH A+IP+LL+ YRH+PFYA IRTVFTIHNLLYQGV+PY VL +LL Sbjct: 121 VIGFQPDVLHCHDWHTAMIPLLLEDVYRHDPFYAGIRTVFTIHNLLYQGVYPYEVLVDLL 180 Query: 181 GLDDSYFL--GVEYYGNVNFMKAGIVYSDHITTVSPTYSEEIRTAYYGYGLDGLLSSRAD 238 G+ +F GVEYYGNVNFMKAGIVY+DH+TTVSPTY+ EI+T YYGYGLDGLLS++ Sbjct: 181 GIHSRHFTAEGVEYYGNVNFMKAGIVYADHVTTVSPTYATEIQTGYYGYGLDGLLSAQGS 240 Query: 239 SLSGIVNGIDTKIYNPASDPQIYTRYRTNLAKKAENKIALQQELGLPVAPYIPLIAMVTR 298 LSGIVNGIDTK YNPA+DP + ++R+ L KK +NKIALQ+EL LPVAP+IPL++MVTR Sbjct: 241 RLSGIVNGIDTKSYNPATDPHLAMKFRSGLNKKTQNKIALQEELNLPVAPHIPLMSMVTR 300 Query: 299 LVDSKGXXXXXXXXXXXXYYDDIQFVLLGTGDEVYERWFREAQWRYPTKLSSQILFSDAL 358 LVDSKG YYD+IQFV+LGTGD YE WFREA RYPTK+S+QI F++ L Sbjct: 301 LVDSKGLDLVIRILDELLYYDEIQFVVLGTGDPSYEHWFREAANRYPTKMSAQIRFNEPL 360 Query: 359 SRKIYAASDLFLMPSKFEPCGIGQLLALRYGSIP 392 SR+ YA SDLFLMPSKFEPCGI QL+A+RYGS+P Sbjct: 361 SRRFYAGSDLFLMPSKFEPCGISQLIAMRYGSVP 394 >B7AY32.1 B7AY32_9FIRM Putative uncharacterized protein Length = 483 Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust. Identities = 223/395 (56%), Positives = 297/395 (75%), Gaps = 3/395 (0%) Query: 1 MKVLFAAAEAHPFVKTGGLADVIGALPKALKGVGVDVRVILPKYRGIPEKFVSQMEHVAA 60 MKVL+ A+EA PF KTGGLADV G+LPKALK GVDVRVI+PK+ IPEKF + MEHV Sbjct: 1 MKVLYVASEAVPFAKTGGLADVAGSLPKALKAEGVDVRVIMPKFGKIPEKFRNAMEHVYD 60 Query: 61 LSVPVGWRNQYCGIERIIYDGIPVYFIDNEYYFGRDGIYGYMDDGERFSFFNRAVLECLE 120 +PV WR++Y G+++I +DG+ YF+DNE YF R+G YGY DD ERFSFF RAVL L Sbjct: 61 GEIPVSWRSKYVGLDKIEHDGVIYYFVDNEEYFRREGFYGYGDDAERFSFFCRAVLNLLP 120 Query: 121 TLDFQPDVLHCHDWHAAVIPMLLQAHYRHNPFYAEIRTVFTIHNLLYQGVFPYSVLGELL 180 +DF PDV+H +DWH+ ++ +LL+ ++ + Y +IRT++TIHNL YQGVFP V+ ++L Sbjct: 121 AMDFWPDVIHTNDWHSGLVNVLLKIEHQGDERYEKIRTLYTIHNLKYQGVFPKDVMSDVL 180 Query: 181 GLDDSYFLG--VEYYGNVNFMKAGIVYSDHITTVSPTYSEEIRTAYYGYGLDGLLSSRAD 238 GLD YF +E+Y VNFMK G++Y+D+I+TVS TY++EI+ Y+G LDGLL SR D Sbjct: 181 GLDWKYFNNGDLEFYDAVNFMKGGLIYADYISTVSKTYAKEIQYEYFGEHLDGLLRSRQD 240 Query: 239 SLSGIVNGIDTKIYNPASDPQIYTRYR-TNLAKKAENKIALQQELGLPVAPYIPLIAMVT 297 +L GIVNGID +YNP++D +Y Y T L +KA+NK+ LQ++LGLP++ P++AMVT Sbjct: 241 TLFGIVNGIDYDVYNPSTDKNLYEGYDVTTLDRKADNKVLLQKDLGLPISRRTPMVAMVT 300 Query: 298 RLVDSKGXXXXXXXXXXXXYYDDIQFVLLGTGDEVYERWFREAQWRYPTKLSSQILFSDA 357 RLV +KG ++DIQFVLLGTGD+ YE WF+ WR+P K+S+ I FS+ Sbjct: 301 RLVAAKGLDLVVRMMDEILQHEDIQFVLLGTGDKEYEDWFKGLAWRFPKKVSANIYFSNQ 360 Query: 358 LSRKIYAASDLFLMPSKFEPCGIGQLLALRYGSIP 392 L+++IYAASD+FLMPS +EPCGIGQL+ALRYGS+P Sbjct: 361 LAQRIYAASDIFLMPSNYEPCGIGQLIALRYGSVP 395 >C4V5S1.1 C4V5S1_9FIRM Starch synthase EC=2.4.1.21 Length = 481 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 224/396 (56%), Positives = 286/396 (72%), Gaps = 4/396 (1%) Query: 1 MKVLFAAAEAHPFVKTGGLADVIGALPKALKGVGVDVRVILPKYRGIPEKFVSQMEHVAA 60 MKVL+AA+EA PFVKTGGLADV G+LP AL GVD RVILPKY I K S+M+H+ Sbjct: 1 MKVLYAASEAVPFVKTGGLADVAGSLPGALVKAGVDCRVILPKYGSIDPKIRSKMKHLYD 60 Query: 61 LSVPVGWRNQYCGIERIIYDGIPVYFIDNEYYFGRDGIYGYMDDGERFSFFNRAVLECLE 120 ++PV WR ++ GI+ Y+G+ YF+DNE YF R+G YGY DD ERFSFF+RAVL CL Sbjct: 61 GTLPVAWRRKFVGIDSCEYEGVTYYFVDNEEYFNREGYYGYPDDAERFSFFSRAVLNCLP 120 Query: 121 TLDFQPDVLHCHDWHAAVIPMLLQAHYRHNPFYAEIRTVFTIHNLLYQGVFPYSVLGELL 180 L FQPD++H +DWH A+IP+ L+ + +P YA I+T+FTIHNL YQGVFP SV+ ++L Sbjct: 121 ALGFQPDIIHANDWHTALIPVFLKLEHVDDPRYAAIKTLFTIHNLRYQGVFPKSVMADVL 180 Query: 181 GLDDSYFLG--VEYYGNVNFMKAGIVYSDHITTVSPTYSEEIRTAYYGYGLDGLLSSRAD 238 GLD YF E+Y VNFMKAG++Y+D+I+TVS TY+EEI+ YYG LDGLL R Sbjct: 181 GLDWKYFNNGDFEFYDAVNFMKAGLIYTDYISTVSKTYAEEIQYEYYGEHLDGLLRKRKK 240 Query: 239 SLSGIVNGIDTKIYNPASDPQIYTRY--RTNLAKKAENKIALQQELGLPVAPYIPLIAMV 296 L GIVNGI+ IYNP +D +IY Y +T K +NK+ LQ+ELGL A PL+AM+ Sbjct: 241 DLFGIVNGINNTIYNPQTDKEIYVNYDVKTAAEGKVDNKVRLQRELGLAEARRTPLVAMI 300 Query: 297 TRLVDSKGXXXXXXXXXXXXYYDDIQFVLLGTGDEVYERWFREAQWRYPTKLSSQILFSD 356 TRLV +KG ++++QFVLLGTG+ YE WF+E WR+PTK S I FS+ Sbjct: 301 TRLVPNKGIDLVTRVIDEMLEHENMQFVLLGTGEHDYEEWFKELAWRHPTKASVNIRFSN 360 Query: 357 ALSRKIYAASDLFLMPSKFEPCGIGQLLALRYGSIP 392 L+++IYA S+LFLMPS FEPCG+GQL+A+RYGSIP Sbjct: 361 QLAQRIYAGSNLFLMPSTFEPCGLGQLIAMRYGSIP 396 >A4J4I4.1 GLGA_DESRM Glycogen synthase EC=2.4.1.21 Length = 480 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 223/395 (56%), Positives = 282/395 (71%), Gaps = 4/395 (1%) Query: 1 MKVLFAAAEAHPFVKTGGLADVIGALPKALKGVGVDVRVILPKYRGIPEKFVSQMEHVAA 60 MKVLFAA+E PFVKTGGLADVIG+LP+ LK G DVRVILPKY IP F QM + Sbjct: 1 MKVLFAASEGVPFVKTGGLADVIGSLPRHLKSQGFDVRVILPKYSDIPICFREQMLKLTD 60 Query: 61 LSVPVGWRNQYCGIERIIYDGIPVYFIDNEYYFGRDGIYGYMDDGERFSFFNRAVLECLE 120 VP+GWRN YCGIE++ YDGI YFIDNE+YF R G+YG+ DD ERF+FF+RA+LE L Sbjct: 61 FMVPLGWRNLYCGIEKLKYDGIIFYFIDNEFYFKRQGLYGFEDDAERFAFFDRAILEVLP 120 Query: 121 TLDFQPDVLHCHDWHAAVIPMLLQAHYRHNPFYAEIRTVFTIHNLLYQGVFPYSVLGELL 180 +DFQP+++HCHDWH +I L++HYR+NPFY +IRTVFTIHNL YQGVFP ++L +L Sbjct: 121 RIDFQPNIIHCHDWHTGMISTFLKSHYRNNPFYQDIRTVFTIHNLQYQGVFPRTILQNVL 180 Query: 181 GLDDSYF--LGVEYYGNVNFMKAGIVYSDHITTVSPTYSEEIRTAYYGYGLDGLLSSRAD 238 GL + YF G+E+YG V+FMK G+ YSD +TTVS TY+EEI+ YG LDGLL + Sbjct: 181 GLGNEYFGLDGLEFYGQVSFMKGGVNYSDILTTVSETYAEEIQLPQYGEQLDGLLRHQKR 240 Query: 239 SLSGIVNGIDTKIYNPASDPQIYTRY-RTNLAKKAENKIALQQELGLPVAPYIPLIAMVT 297 L GI+NGID IYNP +DP I + R + KK NK +LQ+ L LP+ P +P+ MV+ Sbjct: 241 KLHGILNGIDIDIYNPDTDPHICVNFSRETVDKKHINKESLQKILCLPMRPDVPVFGMVS 300 Query: 298 RLVDSKGXXXXXXXXXXXXYYDDIQFVLLGTGDEVYERWFREAQWRYPTKLSSQILFSDA 357 RLV KG D+Q V+LG+G++ YE FR A RYP K+S I+F + Sbjct: 301 RLVSQKGLELIGSVLDDILAL-DVQLVVLGSGEKHYEDMFRSASRRYPDKVSVNIMFGNT 359 Query: 358 LSRKIYAASDLFLMPSKFEPCGIGQLLALRYGSIP 392 L+ +IYA SD++LMPS FEPCG+ Q++ALRYGSIP Sbjct: 360 LAHRIYAGSDIYLMPSAFEPCGLSQMIALRYGSIP 394 >Q2B4E0.1 Q2B4E0_9BACI Glycogen synthase EC=2.4.1.21 Length = 478 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 214/395 (54%), Positives = 279/395 (70%), Gaps = 4/395 (1%) Query: 1 MKVLFAAAEAHPFVKTGGLADVIGALPKALKGVGVDVRVILPKYRGIPEKFVSQMEHVAA 60 MKVLFA +E PFVK+GGLADV G+LPK LK +G DVR+ILPKY IPE + +M+ V Sbjct: 1 MKVLFAVSECVPFVKSGGLADVAGSLPKELKKLGTDVRIILPKYGSIPETYKKKMKKVRE 60 Query: 61 LSVPVGWRNQYCGIERIIYDGIPVYFIDNEYYFGRDGIYGYMDDGERFSFFNRAVLECLE 120 SV VGWRNQYCGIE +++DG+ YF+DNEYYF RD +YGY DDGERF++F+RAVLE + Sbjct: 61 FSVSVGWRNQYCGIEELVHDGVIFYFVDNEYYFLRDQLYGYFDDGERFAYFSRAVLESMR 120 Query: 121 TLDFQPDVLHCHDWHAAVIPMLLQAHYRHNPFYAEIRTVFTIHNLLYQGVFPYSVLGELL 180 LDF PD++HCHDWH ++P LL YRH YA I++VFTIHNL +QG+ P LG+L Sbjct: 121 ELDFYPDIIHCHDWHTGMVPFLLSVQYRHIKEYASIKSVFTIHNLQFQGIMPKEALGDLF 180 Query: 181 GLDDSYFLG--VEYYGNVNFMKAGIVYSDHITTVSPTYSEEIRTAYYGYGLDGLLSSRAD 238 GL++ F +E+YG +NFMKA + +D ITTVSPTY EI+ YYG LDGLL R Sbjct: 181 GLEEFCFNAEQLEFYGCINFMKAALTSADKITTVSPTYKAEIQNEYYGEKLDGLLRMRDG 240 Query: 239 SLSGIVNGIDTKIYNPASDPQIYTRYRTN-LAKKAENKIALQQELGLPVAPYIPLIAMVT 297 L+GI+NGID Y+P +DP I Y N L K +NK +LQ+ GLP P +P+IAM+T Sbjct: 241 DLAGILNGIDADFYDPENDPMIAAPYNVNLLTNKGKNKRSLQKMAGLPEHPEVPIIAMIT 300 Query: 298 RLVDSKGXXXXXXXXXXXXYYDDIQFVLLGTGDEVYERWFREAQWRYPTKLSSQILFSDA 357 RL KG ++QF++LGTG+E +E++F + YP K+ + + F++ Sbjct: 301 RLTSQKGLDLVKCVFQELM-SAEVQFIVLGTGEEEFEQFFAGMEQEYPEKVRAYLRFNED 359 Query: 358 LSRKIYAASDLFLMPSKFEPCGIGQLLALRYGSIP 392 L+ KIYA +DLFLMPSKFEPCG+GQL+A+RYG+IP Sbjct: 360 LAHKIYAGADLFLMPSKFEPCGLGQLIAMRYGTIP 394 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.142 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,457,152,844 Number of extensions: 106678401 Number of successful extensions: 233705 Number of sequences better than 1.0e-05: 3000 Number of HSP's gapped: 223730 Number of HSP's successfully gapped: 3041 Length of query: 401 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 263 Effective length of database: 1,760,596,133 Effective search space: 463036782979 Effective search space used: 463036782979 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)