BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0402.0001.p (407 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6L5.1 B3K6L5_9BACI Glucose-1-phosphate adenylyltransferase EC... 572 e-161 B1DH57.1 B1DH57_9BACL Nucleotidyl transferase 424 e-116 A4IS22.1 GLGC_GEOTN Glucose-1-phosphate adenylyltransferase EC=2... 415 e-114 A9VM89.1 GLGC_BACWK Glucose-1-phosphate adenylyltransferase EC=2... 399 e-109 C2MSH8.1 C2MSH8_BACCE Glucose-1-phosphate adenylyltransferase 399 e-109 >B3K6L5.1 B3K6L5_9BACI Glucose-1-phosphate adenylyltransferase EC=2.7.7.27 Length = 404 Score = 572 bits (1474), Expect = e-161, Method: Compositional matrix adjust. Identities = 275/402 (68%), Positives = 324/402 (80%), Gaps = 3/402 (0%) Query: 1 MSKKECIAMLLAGGEGRRLAPLTSTMAKPAVPFGGQYRIIDFPLSNCVNSNIDTVGVLTQ 60 M KK+CIAMLLAGGEG+RLAPLTS +AKPAVPFGG YRIIDFPLSNCVNS IDTVGVLTQ Sbjct: 1 MKKKDCIAMLLAGGEGKRLAPLTSRLAKPAVPFGGHYRIIDFPLSNCVNSGIDTVGVLTQ 60 Query: 61 YEADSLHNHIGEGEPWGLHTQSNKGVKLLPSGVEGRDSYTGTADAIYKNIEFIDSHHPEH 120 YEA+SLH HIGEGEPWGL +G+ LLPS +D Y GTADAIYKNI++ID +PEH Sbjct: 61 YEAESLHEHIGEGEPWGLTHTGREGIALLPSNSTHQDGYLGTADAIYKNIQYIDDQNPEH 120 Query: 121 VLILSADHIYHMNYRKMLDYHLSKNAKATISVMEVPWEEASRFGVMNVNDELKISEFAEK 180 VLILS DHIY M+YR+ML+ H+ + A ATISVMEVPWE+ASRFGVM+V+D L I EFAEK Sbjct: 121 VLILSGDHIYQMDYREMLEAHMKQGAPATISVMEVPWEDASRFGVMSVDDNLNIIEFAEK 180 Query: 181 PKVPKSNLASMGIYLFEWKYLKEHLLQDAADSASSHDFGKDVIPKMLDGNEDLFAYRFNG 240 P P+SNLASMGIYLF W YLK+HL++DA+D SSHDFGKDVIPKML G E L A+RF G Sbjct: 181 PAEPQSNLASMGIYLFRWDYLKQHLIEDASDPNSSHDFGKDVIPKMLSGEESLLAFRFQG 240 Query: 241 YWRDVGTVGSLWEAHMDLLHEGNGFKLDNSRWPMYSRARRTKPVAHKPRIQLPSADSLVN 300 YWRDVGTV SLWEAHMD+L + N L+ + WPMY+RA +TK A + R + D L++ Sbjct: 241 YWRDVGTVESLWEAHMDVLSQ-NELVLERADWPMYTRAWKTKLSAARTR-NVEHTDCLIH 298 Query: 301 DSCLLEGSLNRSVVFGGVEVGKLSLVKQSVIMPGVRIGRGVLIENAIIGEGAVIKDGAVI 360 D C EG SV+F G E+GK S+VK SV+MP +IG+GV IE+AIIGEGAVIKDGAV+ Sbjct: 299 DQCSFEGKAKSSVIFCGSEIGKYSIVKDSVVMPNAKIGKGVHIEHAIIGEGAVIKDGAVV 358 Query: 361 KGSPDNIVVVGPHEIVAAKPVIKTQPSRLLQEVYEKTGRLRA 402 KG+P N+VVVGP+E V KP ++TQP+RLLQ+VYEK GRLRA Sbjct: 359 KGAPGNVVVVGPYETVLPKPTVRTQPARLLQDVYEK-GRLRA 399 >B1DH57.1 B1DH57_9BACL Nucleotidyl transferase Length = 411 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 213/395 (53%), Positives = 278/395 (70%), Gaps = 11/395 (2%) Query: 1 MSKKECIAMLLAGGEGRRLAPLTSTMAKPAVPFGGQYRIIDFPLSNCVNSNIDTVGVLTQ 60 M++ C+AMLLAGGEG+RLAPLT+ +AKP VPFG QYR+IDFPLSNC+NS I +GVLTQ Sbjct: 1 MTQMNCMAMLLAGGEGKRLAPLTTALAKPVVPFGEQYRMIDFPLSNCMNSGIRRIGVLTQ 60 Query: 61 YEADSLHNHIGEGEPW--GLHTQSNKGVKLLPSGVEGRD-SYTGTADAIYKNIEFIDSHH 117 + AD++H HIG GE W + + + LLP+ V + YTGTADAIY+N+ +I+ H+ Sbjct: 61 FCADTVHRHIGGGEAWLNAVQPKHLGEIALLPASVASPNGCYTGTADAIYRNLSYIEQHN 120 Query: 118 PEHVLILSADHIYHMNYRKMLDYHLSKNAKATISVMEVPWEEASRFGVMNVNDELKISEF 177 PEHVLILS DHIY M+YR ML+ H+ A ATI+V VPW EASRFG++N N++ + EF Sbjct: 121 PEHVLILSGDHIYQMDYRPMLEAHIKSGAAATIAVKRVPWHEASRFGILNTNEDYSVVEF 180 Query: 178 AEKPKVPKSNLASMGIYLFEWKYLKEHLLQDAADSASSHDFGKDVIPKMLDGNEDLFAYR 237 EKP P+SNLASMGIY+F L+E LL+DA + SSHDFGKD+IP +L L AY Sbjct: 181 EEKPSRPRSNLASMGIYMFRTDMLREVLLKDAGNPVSSHDFGKDIIPMLLQDGASLTAYP 240 Query: 238 FNGYWRDVGTVGSLWEAHMDLLHEGNGFKLDNSRWPMYSRARRTKPVAHKPRIQLPSA-- 295 + GYWRDVGTV SLWEAHM+L+ L +WP+Y +++ K + +P ++ SA Sbjct: 241 YEGYWRDVGTVDSLWEAHMELID--GTLNLSEPQWPLYCSSQKRKS-SLRPNLRNLSAER 297 Query: 296 DSLVNDSCLLEGSLNRSVVFGGVEVGKLSLVKQSVIMPGVRIGRGVLIENAIIGEGAVIK 355 DS+V+D+C +EG RSV+ G +VGK SL+ +S+IMPG RIGR V I AIIGE AVI+ Sbjct: 298 DSIVHDNCRMEGIAQRSVISDGADVGKGSLIHESIIMPGARIGRNVRIHKAIIGENAVIE 357 Query: 356 DGAVIKGSP--DNIVVVGPHEIVAAKPVIKTQPSR 388 DGA+I G+P + I VVGP + VA+ SR Sbjct: 358 DGAII-GAPQSEQIAVVGPGQRVASGRKTAVSASR 391 >A4IS22.1 GLGC_GEOTN Glucose-1-phosphate adenylyltransferase EC=2.7.7.27 Length = 387 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 208/371 (56%), Positives = 268/371 (72%), Gaps = 6/371 (1%) Query: 3 KKECIAMLLAGGEGRRLAPLTSTMAKPAVPFGGQYRIIDFPLSNCVNSNIDTVGVLTQYE 62 KK+CIAMLLAGG+G RL LT+ +AKPAVPFGG+YRIIDF LSNC NS IDTVGVLTQY+ Sbjct: 2 KKKCIAMLLAGGQGSRLRSLTTNIAKPAVPFGGKYRIIDFTLSNCTNSGIDTVGVLTQYQ 61 Query: 63 ADSLHNHIGEGEPWGLHTQSNKGVKLLP--SGVEGRDSYTGTADAIYKNIEFIDSHHPEH 120 LH++IG G W L + N GV +LP S G Y GTA+A+Y+NI +I+ ++P++ Sbjct: 62 PLLLHSYIGIGSAWDLD-RRNGGVTVLPPYSVSSGVKWYEGTANAVYQNINYIEQYNPDY 120 Query: 121 VLILSADHIYHMNYRKMLDYHLSKNAKATISVMEVPWEEASRFGVMNVNDELKISEFAEK 180 VL+LS DHIY M+Y+ MLDYH++K A TISV+EVPWEEASRFG+MN N+E++I EFAEK Sbjct: 121 VLVLSGDHIYKMDYQHMLDYHIAKQADVTISVIEVPWEEASRFGIMNTNEEMEIVEFAEK 180 Query: 181 PKVPKSNLASMGIYLFEWKYLKEHLLQDAADSASSHDFGKDVIPKMLDGNEDLFAYRFNG 240 P PKSNLASMGIY+F W LK++L D A+ SSHDFGKDVIP +L + LFAY F G Sbjct: 181 PAEPKSNLASMGIYIFNWPLLKQYLQIDNANPHSSHDFGKDVIPMLLREKKRLFAYPFEG 240 Query: 241 YWRDVGTVGSLWEAHMDLLHEGNGFKLDNSRWPMYSRARRTKPVAHKPRIQLPSADSLVN 300 YW+DVGTV SLWEA+MDLL E N L + W +YS P P ++ +DSLVN Sbjct: 241 YWKDVGTVKSLWEANMDLLDENNELDLFDRSWRIYSVNPNQPPQYISPEAEV--SDSLVN 298 Query: 301 DSCLLEGSLNRSVVFGGVEVGKLSLVKQSVIMPGVRIGRGVLIENAIIGEGAVI-KDGAV 359 + C++EG++ RSV+F GV +GK ++VK+SVIMPG + G +E AI+ +VI +V Sbjct: 299 EGCVVEGTVERSVLFQGVRIGKGAVVKESVIMPGAAVSEGAYVERAIVTPDSVIPPHSSV 358 Query: 360 IKGSPDNIVVV 370 D++V+V Sbjct: 359 CPEDADDVVLV 369 >A9VM89.1 GLGC_BACWK Glucose-1-phosphate adenylyltransferase EC=2.7.7.27 Length = 376 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 201/375 (53%), Positives = 271/375 (72%), Gaps = 11/375 (2%) Query: 3 KKECIAMLLAGGEGRRLAPLTSTMAKPAVPFGGQYRIIDFPLSNCVNSNIDTVGVLTQYE 62 K++C+AMLLAGG+G RL+ LT +AKPAVPFGG+YRIIDF LSNC NS I+TVG+LTQY+ Sbjct: 4 KQKCVAMLLAGGKGSRLSALTKNLAKPAVPFGGKYRIIDFTLSNCANSGIETVGILTQYQ 63 Query: 63 ADSLHNHIGEGEPWGLHTQSNKGVKLLPSGVE--GRDSYTGTADAIYKNIEFIDSHHPEH 120 LHN+IG G W L + N GV +LP E G YTGTA AIY+N+ ++ + PE+ Sbjct: 64 PLELHNYIGIGNAWDLD-RVNGGVTVLPPYAESSGVKWYTGTASAIYQNLNYLSQYEPEY 122 Query: 121 VLILSADHIYHMNYRKMLDYHLSKNAKATISVMEVPWEEASRFGVMNVNDELKISEFAEK 180 VLILS DHIY M+Y KMLDYH+ K A +ISV+EVPW+EASRFG+MN N+E+++ EF EK Sbjct: 123 VLILSGDHIYKMDYSKMLDYHIEKEADVSISVIEVPWDEASRFGIMNTNEEMEVVEFEEK 182 Query: 181 PKVPKSNLASMGIYLFEWKYLKEHLLQDAADSASSHDFGKDVIPKMLDGNEDLFAYRFNG 240 P+ P+SNLASMGIY+F W LKE+L DA + SS+DFGKDV+P +LD + L AY F G Sbjct: 183 PQFPRSNLASMGIYIFNWAILKEYLEMDARNPESSNDFGKDVLPLLLDEGKKLMAYPFEG 242 Query: 241 YWRDVGTVGSLWEAHMDLLHEGNGFKLDNSRWPMYSRARRTKP--VAHKPRIQLPSADSL 298 YW+DVGTV SLWEA+MDLL + L++ W +YS P +A K +++ +SL Sbjct: 243 YWKDVGTVKSLWEANMDLLRDETSLNLNDRNWRIYSVNPNEPPQYIAEKAKVE----ESL 298 Query: 299 VNDSCLLEGSLNRSVVFGGVEVGKLSLVKQSVIMPGVRIGRGVLIENAIIGEGAVIKDGA 358 +N+ C++EG + SV+F GV V + S+V SV+MPG +IG+ V+IE AI+G VI+DG Sbjct: 299 INEGCVIEGDVKHSVLFQGVTVEEGSMVIDSVVMPGAKIGKNVVIERAIVGSEMVIEDGT 358 Query: 359 VIK--GSPDNIVVVG 371 +I+ + D++V++ Sbjct: 359 IIRPEKNVDDVVLIA 373 >C2MSH8.1 C2MSH8_BACCE Glucose-1-phosphate adenylyltransferase Length = 376 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 203/375 (54%), Positives = 270/375 (72%), Gaps = 11/375 (2%) Query: 3 KKECIAMLLAGGEGRRLAPLTSTMAKPAVPFGGQYRIIDFPLSNCVNSNIDTVGVLTQYE 62 K++C+AMLLAGG+G RL+ LT +AKPAVPFGG+YRIIDF LSNC NS I+TVG+LTQY+ Sbjct: 4 KQKCVAMLLAGGKGSRLSALTKNLAKPAVPFGGKYRIIDFTLSNCANSGIETVGILTQYQ 63 Query: 63 ADSLHNHIGEGEPWGLHTQSNKGVKLLPSGVE--GRDSYTGTADAIYKNIEFIDSHHPEH 120 LHN+IG G W L S GV +LP E G YTGTA AIY+N+ ++ + PE+ Sbjct: 64 PLELHNYIGIGNAWDLDRVSG-GVTVLPPYAESSGVKWYTGTASAIYQNLNYLSQYEPEY 122 Query: 121 VLILSADHIYHMNYRKMLDYHLSKNAKATISVMEVPWEEASRFGVMNVNDELKISEFAEK 180 VLILS DHIY M+Y KMLDYH+ K A +ISV+EVPW+EASRFG+MN N+E++I EF EK Sbjct: 123 VLILSGDHIYKMDYSKMLDYHIEKEADVSISVIEVPWDEASRFGIMNTNEEMEIVEFEEK 182 Query: 181 PKVPKSNLASMGIYLFEWKYLKEHLLQDAADSASSHDFGKDVIPKMLDGNEDLFAYRFNG 240 P+ P+SNLASMGIY+F W LKE+L DA + SS+DFGKDV+P +LD + L AY F G Sbjct: 183 PQFPRSNLASMGIYIFNWAILKEYLEMDARNPESSNDFGKDVLPLLLDEGKKLMAYPFEG 242 Query: 241 YWRDVGTVGSLWEAHMDLLHEGNGFKLDNSRWPMYSRARRTKP--VAHKPRIQLPSADSL 298 YW+DVGTV SLWEA+MDLL + L++ W +YS P +A K R++ +SL Sbjct: 243 YWKDVGTVKSLWEANMDLLRDETSLNLNDRDWRIYSVNPNEPPQYIAEKARVE----ESL 298 Query: 299 VNDSCLLEGSLNRSVVFGGVEVGKLSLVKQSVIMPGVRIGRGVLIENAIIGEGAVIKDGA 358 +N+ C++EG + SV+F GV V + S+V SV+MPG +IG+ V+IE AI+G VI+DG Sbjct: 299 INEGCVIEGDVKHSVLFQGVTVEEGSMVIDSVVMPGAKIGKNVVIERAIVGSEMVIEDGT 358 Query: 359 VIK--GSPDNIVVVG 371 +I+ + D++V++ Sbjct: 359 IIRPEKNVDDVVLIA 373 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,523,945,358 Number of extensions: 111457913 Number of successful extensions: 262522 Number of sequences better than 1.0e-05: 3575 Number of HSP's gapped: 254841 Number of HSP's successfully gapped: 3659 Length of query: 407 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 269 Effective length of database: 1,760,596,133 Effective search space: 473600359777 Effective search space used: 473600359777 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)