BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0401.0003.p (325 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z9P3.1 C0Z9P3_BREBN Conserved hypothetical membrane protein 352 3e-95 C1L0S4.1 C1L0S4_LISMC Putative Conserved membrane protein 297 8e-79 Q722P9.1 Q722P9_LISMF Phage infection protein 297 8e-79 Q4ELK0.1 Q4ELK0_LISMO Phage infection protein 297 8e-79 Q92E08.1 Q92E08_LISIN Lin0653 protein 297 8e-79 >C0Z9P3.1 C0Z9P3_BREBN Conserved hypothetical membrane protein Length = 891 Score = 352 bits (903), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 178/320 (55%), Positives = 234/320 (73%), Gaps = 1/320 (0%) Query: 6 PRIQNGLPAAGEHIHAAAEFARKDLPGAEEKFRRASEWITAGLPRADRGVNRAAELVRND 65 P +++ LPA G+ ++ AA F + DLP AE + ++++ LP + GV+R A LVR+D Sbjct: 571 PFLKSNLPAIGKKLNEAAAFVQNDLPKAEADLTKLADFVRYKLPEVETGVHRVAALVRDD 630 Query: 66 LPALEHAVRRAADTVRKVKREVNLEEIAQLLGGDIKGTSDFLASPVVLKEKALYPIPNYG 125 LP LE A+ +AAD +R+V+ N ++A+LL GDIK S+FLASPV +KE LYPIPNYG Sbjct: 631 LPKLESAIGKAADKLREVEANNNFADLAKLLRGDIKKESEFLASPVQIKENRLYPIPNYG 690 Query: 126 SAMTPFYVVLSLWVGGTLLISLLRIGVDT-GGIPYXXXXYFGRLLTFLTVGIFQALIAVL 184 SAM+PFY VLSLWVG TLLISLL+ + GG+ Y GRL TF+T+G+FQAL L Sbjct: 691 SAMSPFYGVLSLWVGATLLISLLKPNPENPGGVYKPYQLYLGRLGTFVTIGLFQALFVTL 750 Query: 185 GNMYLLKCYVADKLWFVLFAVLISIVFVTIVFTLVYVFGNLGKGIAIVFMVLQFSSSGGT 244 G++Y+L +VADK FVLF +L+S+VFVTI +TLV VFGN+GKGIAI+FMV QFSSSGGT Sbjct: 751 GDIYILGAFVADKAPFVLFGMLVSLVFVTITYTLVSVFGNVGKGIAIIFMVFQFSSSGGT 810 Query: 245 FPISTTGRFFQILNPFMPFTYAISLLREAVGGILPEVAVRDALYLVLFGMLALVLALTLQ 304 FPIS T FFQ LNP+MPFTYAISLLRE VGGIL E +RD L L F ++L +AL L+ Sbjct: 811 FPISMTAPFFQALNPYMPFTYAISLLREGVGGILWETVIRDILVLFGFIGISLFVALALK 870 Query: 305 KPLERFIRRAAEQAEASRLI 324 +PL I ++ E ++ +++I Sbjct: 871 RPLSGIIEKSMENSKKTKII 890 >C1L0S4.1 C1L0S4_LISMC Putative Conserved membrane protein Length = 896 Score = 297 bits (761), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 150/318 (47%), Positives = 212/318 (66%), Gaps = 3/318 (0%) Query: 9 QNGLPAAGEHIHAAAEFARKDLPGAEEKFRRASEWITAGLPRADRGVNRAAELVRNDLPA 68 QN P +I AA F R DLPG E++ +AS I +P ++ + AA+L R +LP Sbjct: 579 QNDYPNVKANIKKAANFIRDDLPGLEKEINQASNLIQEKMPEFEKAIKIAADLSREELPE 638 Query: 69 LEHAVRRAADTVRKVKREVNLEEIAQLLGGDIKGTSDFLASPVVLKEKALYPIPNYGSAM 128 E A+ AA+ + + +L+ I ++L D S F+A+PV LKE + YPIPNYGSA Sbjct: 639 FEKAINNAANKITDFDKNYDLQSIIKMLRNDADKDSSFIANPVKLKETSYYPIPNYGSAS 698 Query: 129 TPFYVVLSLWVGGTLLISLLRIGVDT-GGIPYXXXXYFGRLLTFLTVGIFQALIAVLGNM 187 +PFY L LWVG LLISLLR+ V+ GI YFGRLLTFL++G+ QALI LGN+ Sbjct: 699 SPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLLTFLSIGLMQALIVTLGNI 758 Query: 188 YLLKCYVADKLWFVLFAVLISIVFVTIVFTLVYVFGNLGKGIAIVFMVLQFSSSGGTFPI 247 +LL +A+ L VLF++ IS+VF+TIV+TLV +F N+GKGIAI+ +VLQ S +GG FPI Sbjct: 759 FLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISGAGGNFPI 818 Query: 248 STTGRFFQILNPFMPFTYAISLLREAVGGI-LPEVAVRDALYLVLFGMLALVLALTLQKP 306 + FFQ + PF+PFTYA+SL+RE+VGG+ +P V + D L F +L + L + L+KP Sbjct: 819 QVSPPFFQAIYPFLPFTYAVSLIRESVGGLYMPTVWI-DMSVLAGFAILFITLGILLKKP 877 Query: 307 LERFIRRAAEQAEASRLI 324 L++ + + +E+A+ S+LI Sbjct: 878 LDKVVPKLSEKAKRSKLI 895 >Q722P9.1 Q722P9_LISMF Phage infection protein Length = 896 Score = 297 bits (761), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 150/318 (47%), Positives = 212/318 (66%), Gaps = 3/318 (0%) Query: 9 QNGLPAAGEHIHAAAEFARKDLPGAEEKFRRASEWITAGLPRADRGVNRAAELVRNDLPA 68 QN P +I AA F R DLPG E++ +AS I +P ++ + AA+L R +LP Sbjct: 579 QNDYPNVKANIKKAANFIRDDLPGLEKEINQASNLIQEKMPEFEKAIKIAADLSREELPE 638 Query: 69 LEHAVRRAADTVRKVKREVNLEEIAQLLGGDIKGTSDFLASPVVLKEKALYPIPNYGSAM 128 E A+ AA+ + + +L+ I ++L D S F+A+PV LKE + YPIPNYGSA Sbjct: 639 FEKAINNAANKITDFDKNYDLQSIIKMLRNDADKDSSFIANPVKLKETSYYPIPNYGSAS 698 Query: 129 TPFYVVLSLWVGGTLLISLLRIGVDT-GGIPYXXXXYFGRLLTFLTVGIFQALIAVLGNM 187 +PFY L LWVG LLISLLR+ V+ GI YFGRLLTFL++G+ QALI LGN+ Sbjct: 699 SPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLLTFLSIGLMQALIVTLGNI 758 Query: 188 YLLKCYVADKLWFVLFAVLISIVFVTIVFTLVYVFGNLGKGIAIVFMVLQFSSSGGTFPI 247 +LL +A+ L VLF++ IS+VF+TIV+TLV +F N+GKGIAI+ +VLQ S +GG FPI Sbjct: 759 FLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISGAGGNFPI 818 Query: 248 STTGRFFQILNPFMPFTYAISLLREAVGGI-LPEVAVRDALYLVLFGMLALVLALTLQKP 306 + FFQ + PF+PFTYA+SL+RE+VGG+ +P V + D L F +L + L + L+KP Sbjct: 819 QVSPPFFQAIYPFLPFTYAVSLIRESVGGLYMPTVWI-DMSVLAGFAILFITLGILLKKP 877 Query: 307 LERFIRRAAEQAEASRLI 324 L++ + + +E+A+ S+LI Sbjct: 878 LDKVVPKLSEKAKRSKLI 895 >Q4ELK0.1 Q4ELK0_LISMO Phage infection protein Length = 896 Score = 297 bits (761), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 150/318 (47%), Positives = 212/318 (66%), Gaps = 3/318 (0%) Query: 9 QNGLPAAGEHIHAAAEFARKDLPGAEEKFRRASEWITAGLPRADRGVNRAAELVRNDLPA 68 QN P +I AA F R DLPG E++ +AS I +P ++ + AA+L R +LP Sbjct: 579 QNDYPNVKANIKKAANFIRDDLPGLEKEINQASNLIQEKMPEFEKAIKIAADLSREELPE 638 Query: 69 LEHAVRRAADTVRKVKREVNLEEIAQLLGGDIKGTSDFLASPVVLKEKALYPIPNYGSAM 128 E A+ AA+ + + +L+ I ++L D S F+A+PV LKE + YPIPNYGSA Sbjct: 639 FEKAINNAANKITDFDKNYDLQSIIKMLRNDADKDSSFIANPVKLKETSYYPIPNYGSAS 698 Query: 129 TPFYVVLSLWVGGTLLISLLRIGVDT-GGIPYXXXXYFGRLLTFLTVGIFQALIAVLGNM 187 +PFY L LWVG LLISLLR+ V+ GI YFGRLLTFL++G+ QALI LGN+ Sbjct: 699 SPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLLTFLSIGLMQALIVTLGNI 758 Query: 188 YLLKCYVADKLWFVLFAVLISIVFVTIVFTLVYVFGNLGKGIAIVFMVLQFSSSGGTFPI 247 +LL +A+ L VLF++ IS+VF+TIV+TLV +F N+GKGIAI+ +VLQ S +GG FPI Sbjct: 759 FLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISGAGGNFPI 818 Query: 248 STTGRFFQILNPFMPFTYAISLLREAVGGI-LPEVAVRDALYLVLFGMLALVLALTLQKP 306 + FFQ + PF+PFTYA+SL+RE+VGG+ +P V + D L F +L + L + L+KP Sbjct: 819 QVSPPFFQAIYPFLPFTYAVSLIRESVGGLYMPTVWI-DMSVLAGFAILFITLGILLKKP 877 Query: 307 LERFIRRAAEQAEASRLI 324 L++ + + +E+A+ S+LI Sbjct: 878 LDKVVPKLSEKAKRSKLI 895 >Q92E08.1 Q92E08_LISIN Lin0653 protein Length = 896 Score = 297 bits (761), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 152/318 (47%), Positives = 211/318 (66%), Gaps = 3/318 (0%) Query: 9 QNGLPAAGEHIHAAAEFARKDLPGAEEKFRRASEWITAGLPRADRGVNRAAELVRNDLPA 68 QN P +I AA F R DLPG E++ +AS I +P ++ V AA L R +LP Sbjct: 579 QNDYPNVKANIKKAANFIRDDLPGLEKEINQASNLIQEKMPEFEKAVKIAANLSREELPE 638 Query: 69 LEHAVRRAADTVRKVKREVNLEEIAQLLGGDIKGTSDFLASPVVLKEKALYPIPNYGSAM 128 E A+ AA+ + + +L+ I ++L D S F+A+PV LKE + YPIPNYGSA Sbjct: 639 FEKAINNAANKITDFDKNYDLQSIIKMLRNDADKDSSFIANPVNLKETSYYPIPNYGSAS 698 Query: 129 TPFYVVLSLWVGGTLLISLLRIGVDT-GGIPYXXXXYFGRLLTFLTVGIFQALIAVLGNM 187 +PFY L LWVG LLISLLR+ V+ GI YFGRLLTFL++G+ QALI LGN+ Sbjct: 699 SPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLLTFLSIGLMQALIVTLGNI 758 Query: 188 YLLKCYVADKLWFVLFAVLISIVFVTIVFTLVYVFGNLGKGIAIVFMVLQFSSSGGTFPI 247 +LL +A+ L VLF++ IS+VF+TIV+TLV +F N+GKGIAI+ +VLQ S +GG FPI Sbjct: 759 FLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGKGIAIILLVLQISGAGGNFPI 818 Query: 248 STTGRFFQILNPFMPFTYAISLLREAVGGI-LPEVAVRDALYLVLFGMLALVLALTLQKP 306 + FFQ + PF+PFTYA+SL+RE+VGG+ +P V + D L F +L + L L L+KP Sbjct: 819 QVSPPFFQAIYPFLPFTYAVSLIRESVGGLYMPTVWI-DMSVLAGFAILFIALGLLLKKP 877 Query: 307 LERFIRRAAEQAEASRLI 324 L++ + + +E+A+ S+LI Sbjct: 878 LDKVVPKLSEKAKRSKLI 895 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.143 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,819,330,511 Number of extensions: 74619570 Number of successful extensions: 297467 Number of sequences better than 1.0e-05: 692 Number of HSP's gapped: 296788 Number of HSP's successfully gapped: 708 Length of query: 325 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 189 Effective length of database: 1,779,438,163 Effective search space: 336313812807 Effective search space used: 336313812807 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)