BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0401.0002.p (294 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAJ8.1 B3KAJ8_9BACI Helix-turn-helix domain protein 240 1e-61 B3KIV0.1 B3KIV0_9BACI Helix-turn-helix domain protein 228 5e-58 B3KIV3.1 B3KIV3_9BACI Putative uncharacterized protein 226 3e-57 A9U7T8.1 A9U7T8_PHYPA Predicted protein (Fragment) 197 1e-48 C0Z8G2.1 C0Z8G2_BREBN Putative DNA-binding protein 144 1e-32 >B3KAJ8.1 B3KAJ8_9BACI Helix-turn-helix domain protein Length = 467 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 116/242 (47%), Positives = 167/242 (69%), Gaps = 2/242 (0%) Query: 1 LKREGITINQFAGISGVNSGTLSSIINGNRPVAVKQLDRITAGMGLPEGEWYELYIDEYV 60 LK+E ++I+ FA S +NSGTLS I G +P++V LD +T M L EG +Y Y E + Sbjct: 16 LKKENLSISSFANKSRINSGTLSRFIKGQQPLSVSNLDLVTEAMNLEEGYFYSFYAYECM 75 Query: 61 VNSTPDWRRLGPFLQRCAELDKLECIRQVVRTIMDNISYAQAVFEMGEEWFGQGKRQAAA 120 + S+P+WRRLGPF+ RCAEL+KL+C+ Q+V +MDN++Y+ +F+ E + +G R+AA Sbjct: 76 IQSSPNWRRLGPFIMRCAELNKLKCLDQLVGMMMDNLTYSSLLFDTAEALYHKGNREAAL 135 Query: 121 LLYEGVAESEKYQHSERLALCQYRLFKIALGQDQEANLRAAMHFEYFVERLDEADQLNAL 180 ++Y+ VAESEKYQH+ERL +CQYR+F +L DQE NL + FE +V+RL +A QL+AL Sbjct: 136 IIYKKVAESEKYQHAERLGMCQYRIFTCSLNSDQEHNLDCTIQFENYVKRLPDAVQLDAL 195 Query: 181 KDLANIYASLHRWDTVDSLAEKMGHKASIQYHNKYHKVSRRAAQ-KETARPLCFYILYSH 239 KDLAN SL +W+ ++MG + + Y K HK +R +++ K A+PL YILYS Sbjct: 196 KDLANTLLSLRKWNKAKYYIQEMGRISRVLYSQK-HKQARPSSRLKRPAKPLFGYILYSD 254 Query: 240 LL 241 LL Sbjct: 255 LL 256 >B3KIV0.1 B3KIV0_9BACI Helix-turn-helix domain protein Length = 181 Score = 228 bits (581), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 104/162 (64%), Positives = 131/162 (80%) Query: 1 LKREGITINQFAGISGVNSGTLSSIINGNRPVAVKQLDRITAGMGLPEGEWYELYIDEYV 60 L + +TIN+FA IS VNSGTLS+I+NGNRP++++QLDRIT+GMGL EG +YELYIDE + Sbjct: 15 LHKNEMTINRFAEISEVNSGTLSNILNGNRPISMQQLDRITSGMGLEEGYFYELYIDECI 74 Query: 61 VNSTPDWRRLGPFLQRCAELDKLECIRQVVRTIMDNISYAQAVFEMGEEWFGQGKRQAAA 120 ++TPDWRRLGPFL RCAEL KL+C+ + VR MDNISY+ +FE E +F +GK +AA Sbjct: 75 FHATPDWRRLGPFLHRCAELGKLDCLDKAVRMTMDNISYSPLLFETAELFFKEGKHEAAV 134 Query: 121 LLYEGVAESEKYQHSERLALCQYRLFKIALGQDQEANLRAAM 162 LLY VAESE++QHSERLALCQYRLF + L DQE N RA++ Sbjct: 135 LLYRSVAESERFQHSERLALCQYRLFTLGLTDDQEMNSRASI 176 >B3KIV3.1 B3KIV3_9BACI Putative uncharacterized protein Length = 414 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 113/210 (53%), Positives = 149/210 (70%), Gaps = 3/210 (1%) Query: 32 VAVKQLDRITAGMGLPEGEWYELYIDEYVVNSTPDWRRLGPFLQRCAELDKLECIRQVVR 91 +++ QLDRIT GMGL EG +Y LYI E + ++TPDWRRL PFL+RCAELDKL+C+ + R Sbjct: 1 MSMHQLDRITEGMGLEEGHFYNLYITESIFHTTPDWRRLRPFLKRCAELDKLDCLHRTAR 60 Query: 92 TIMDNISYAQAVFEMGEEWFGQGKRQAAALLYEGVAESEKYQHSERLALCQYRLFKIALG 151 ++NI+Y +FEM EE F + K +AAALLYE VAE EK Q+SERLALCQYRLF I LG Sbjct: 61 MTLENINYVPMLFEMAEELFIEEKYKAAALLYECVAECEKLQYSERLALCQYRLFLIRLG 120 Query: 152 QDQEANLRAAMHFEYFVERLDEADQLNALKDLANIYASLHRWDTVDSLAEKMGHKASIQY 211 ++QE NL+AA++FE +++RLDE QL+A L N+ SL R D +++LA++M H A I Y Sbjct: 121 ENQEENLQAAVYFEPYIDRLDEMYQLDAYVKLINLNISLQRMDKIEALAKRMEHHARIHY 180 Query: 212 HNKYHKVSRRAAQKETARPLCFYILYSHLL 241 S +PL FYILYS+L+ Sbjct: 181 Q---QNRSWFEGSGNPRKPLIFYILYSYLI 207 >A9U7T8.1 A9U7T8_PHYPA Predicted protein (Fragment) Length = 183 Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 94/183 (51%), Positives = 132/183 (72%), Gaps = 2/183 (1%) Query: 1 LKREGITINQFAGISGVNSGTLSSIINGNRPVAVKQLDRITAGMGLPEGEWYELYIDEYV 60 +++ + ++ FA SG+NSGTLS II G RP++ QL IT+GMGLPE ++ Y+ + Sbjct: 1 MEKNKLKVSHFAEQSGLNSGTLSRIIQGLRPISFNQLIAITSGMGLPEDTFFSSYVS--I 58 Query: 61 VNSTPDWRRLGPFLQRCAELDKLECIRQVVRTIMDNISYAQAVFEMGEEWFGQGKRQAAA 120 P RR+GPFL RCAELD+++CI ++ DNISY +A+F+ EE++ QGK +AA Sbjct: 59 CIKQPSLRRVGPFLLRCAELDRMDCIGRLASAYWDNISYVKALFDYAEEFYIQGKLKAAE 118 Query: 121 LLYEGVAESEKYQHSERLALCQYRLFKIALGQDQEANLRAAMHFEYFVERLDEADQLNAL 180 ++YE V+E+EK QHSERLALCQYRLF I LG++ E NL+ A+ FE ++ RLDE+ QL+AL Sbjct: 119 VIYEMVSEAEKMQHSERLALCQYRLFDIKLGENLEENLKLAVQFELYINRLDESYQLDAL 178 Query: 181 KDL 183 K L Sbjct: 179 KQL 181 >C0Z8G2.1 C0Z8G2_BREBN Putative DNA-binding protein Length = 456 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 135/235 (57%), Gaps = 5/235 (2%) Query: 5 GITINQFAGISGVNSGTLSSIINGNRP--VAVKQLDRITAGMGLPEGEWYELYIDEYVVN 62 G T+++ ++G+N G+LS I+NGN P + + QLD + A G G YELY +E + Sbjct: 24 GYTLSKLGELTGINHGSLSEILNGNPPRAMTIGQLDALAAVFGREPGWLYELYTEECITE 83 Query: 63 STPDWRRLGPFLQRCAELDKLECIRQVVRTIMDNISYAQAVFEMGEEWFGQGKRQAAALL 122 RL P+L RCAE+ + +CI +VV +++N +F + E+ + +GK++ + Sbjct: 84 GRISRPRLIPYLIRCAEVGRQDCIDEVVPKLLENPKNISTLFAVAEQLYEEGKQKQSVPF 143 Query: 123 YEGVAESEKYQHSERLALCQYRLFKIAL-GQDQEANLRAAMHFEYFVERLDEADQLNALK 181 YE V E+EK +S + + QYRLF++ + G + E N +A + F+ + RL E +QL+AL Sbjct: 144 YEYVIENEKDSYSNQFVMSQYRLFRVVVQGTNSEENWKAVIRFDPYRRRLPENNQLDALL 203 Query: 182 DLANIYASLHRWDTVDSLAEKMGHKASIQYHNKYHKVSRRAAQK--ETARPLCFY 234 LAN+ ++H+W +D A+++ A+I Y ++ + A + T R L Y Sbjct: 204 QLANVCYTIHKWREMDKYADELRELATIIYEDELRRRRSNKASEMLSTERHLVVY 258 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.134 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,688,644,152 Number of extensions: 66131353 Number of successful extensions: 156420 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 156408 Number of HSP's successfully gapped: 10 Length of query: 294 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 160 Effective length of database: 1,798,280,193 Effective search space: 287724830880 Effective search space used: 287724830880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)