BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0401.0001.p (150 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIV1.1 B3KIV1_9BACI Putative uncharacterized protein 130 4e-29 B3KIV3.1 B3KIV3_9BACI Putative uncharacterized protein 122 1e-26 B3KAJ8.1 B3KAJ8_9BACI Helix-turn-helix domain protein 93 9e-18 C0ZDR6.1 C0ZDR6_BREBN Putative uncharacterized protein 69 1e-10 C0Z6X4.1 C0Z6X4_BREBN Putative uncharacterized protein 69 1e-10 >B3KIV1.1 B3KIV1_9BACI Putative uncharacterized protein Length = 246 Score = 130 bits (327), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 63/144 (43%), Positives = 100/144 (69%) Query: 1 VLAGYVDFISTRENEIIPGLTKIMQAANRFGLNVDSIIERFEPHAGLKEQRTLMGKRNMQ 60 VL+ Y++F+STRE+EI L IM AANR VD I+E + + K+QR +GK + Q Sbjct: 97 VLSEYMEFVSTREDEIFVALCNIMIAANRHKFQVDHILEDYNDYLIYKQQRNRIGKVSNQ 156 Query: 61 VTEDQYAVLLFELSVYYLKTQRVHRGLAYLLQNLDLSVRMNSDSAIVGCVALFEQYRHLS 120 VT +++ LL EL +YY+ +++ +G+ ++L++L S+ +NS++ ++ C+ LFEQYRH S Sbjct: 157 VTLERHTRLLAELGIYYINSEQYDKGIEFILESLGSSITINSNTGMLRCMGLFEQYRHFS 216 Query: 121 SVEDRERYKILIGEVQKTDEKKSG 144 S+E ++RY L+ EVQK +EKK G Sbjct: 217 SLESQKRYTNLVSEVQKLNEKKIG 240 >B3KIV3.1 B3KIV3_9BACI Putative uncharacterized protein Length = 414 Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 60/137 (43%), Positives = 94/137 (68%) Query: 1 VLAGYVDFISTRENEIIPGLTKIMQAANRFGLNVDSIIERFEPHAGLKEQRTLMGKRNMQ 60 L YVD++ +RE+EI L IM AANR+ L+VD I++RF+ H + Q+ +GK + Q Sbjct: 268 ALHQYVDYVESREHEIFLALCNIMVAANRYQLHVDPILDRFKEHLHYRSQQNELGKISDQ 327 Query: 61 VTEDQYAVLLFELSVYYLKTQRVHRGLAYLLQNLDLSVRMNSDSAIVGCVALFEQYRHLS 120 VT ++Y LL EL +YYL ++ +RGL+Y+L +L+ S+R+ SD+ ++ C+ +FEQ+RH S Sbjct: 328 VTINRYTRLLAELGIYYLNAKQQNRGLSYILDSLEYSIRIKSDNGMLRCMGIFEQFRHAS 387 Query: 121 SVEDRERYKILIGEVQK 137 + + RY LI +VQK Sbjct: 388 TEDILNRYNELIRDVQK 404 >B3KAJ8.1 B3KAJ8_9BACI Helix-turn-helix domain protein Length = 467 Score = 92.8 bits (229), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 49/143 (34%), Positives = 83/143 (58%), Gaps = 1/143 (0%) Query: 1 VLAGYVDFISTRENEIIPGLTKIMQAANRFGLNVDSIIERFEPHAGLKEQRTL-MGKRNM 59 VL Y+D++S+RENEI+ L KI+QAAN + +D +++FE +R +G Sbjct: 317 VLEPYIDYLSSRENEILKALFKIIQAANMYHFEIDQYLDKFEKLILNHLKRGGGVGSYTE 376 Query: 60 QVTEDQYAVLLFELSVYYLKTQRVHRGLAYLLQNLDLSVRMNSDSAIVGCVALFEQYRHL 119 + +D++A L +L YY+ + +G Y+L++L++S ++NS + IV C E RH Sbjct: 377 YIIDDRFANFLTDLGKYYIWKDNIQKGSKYILESLEISYKINSTANIVRCCTTIEHIRHK 436 Query: 120 SSVEDRERYKILIGEVQKTDEKK 142 S D ++Y ++ EV +EKK Sbjct: 437 LSYSDLQKYAAIMKEVYYQNEKK 459 >C0ZDR6.1 C0ZDR6_BREBN Putative uncharacterized protein Length = 455 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 16/126 (12%) Query: 1 VLAGYVDFISTRENEIIPGLTKIMQAANRFGLNVDSIIERFEPHAGLKEQRTLMGKRNMQ 60 +L+ YV+ ++ EI+ G+ IM+ ANRFGL+VD I+ERF Q Sbjct: 325 LLSEYVNHLANNPPEILAGMFTIMETANRFGLSVDDIVERFSKEIAC-----------FQ 373 Query: 61 VTEDQYAV-----LLFELSVYYLKTQRVHRGLAYLLQNLDLSVRMNSDSAIVGCVALFEQ 115 +D +++ + L++Y L RV G+ L+ L L+ +M CVA+F + Sbjct: 374 DYKDPFSLTRHLHFRYHLAIYQLDKGRVAEGITETLRCLALASKMMEQEKFQSCVAMFWK 433 Query: 116 YRHLSS 121 YRH +S Sbjct: 434 YRHSAS 439 >C0Z6X4.1 C0Z6X4_BREBN Putative uncharacterized protein Length = 455 Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 16/126 (12%) Query: 1 VLAGYVDFISTRENEIIPGLTKIMQAANRFGLNVDSIIERFEPHAGLKEQRTLMGKRNMQ 60 +L+ YV+ ++ EI+ G+ IM+ ANRFGL+VD I+ERF Q Sbjct: 325 LLSEYVNHLANNPPEILAGMFTIMETANRFGLSVDDIVERFSKEIAC-----------FQ 373 Query: 61 VTEDQYAV-----LLFELSVYYLKTQRVHRGLAYLLQNLDLSVRMNSDSAIVGCVALFEQ 115 +D +++ + L++Y L RV G+ L+ L L+ +M CVA+F + Sbjct: 374 DYKDPFSLTRHLHFRYHLAIYQLDKGRVAEGITETLRCLALASKMMEQEKFQSCVAMFWK 433 Query: 116 YRHLSS 121 YRH +S Sbjct: 434 YRHSAS 439 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 764,839,103 Number of extensions: 25909059 Number of successful extensions: 62749 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 62745 Number of HSP's successfully gapped: 8 Length of query: 150 Length of database: 3,060,696,203 Length adjustment: 112 Effective length of query: 38 Effective length of database: 2,005,542,523 Effective search space: 76210615874 Effective search space used: 76210615874 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)