BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0400.0008.p
         (112 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6LYY4.1 A6LYY4_CLOB8 Major facilitator superfamily MFS_1             102   1e-20

>A6LYY4.1 A6LYY4_CLOB8 Major facilitator superfamily MFS_1
          Length = 415

 Score =  102 bits (253), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 73/95 (76%)

Query: 2   IFVTNYSIVILSTATIGIGLGIYQVAPFAYAQAYMGEQLIAKGTAFIGFIQGAASVLGGV 61
           +F+++Y ++ILSTA IGIG+GI+QV PFA+AQ ++ ++LIA+G +FI F+QG A V+ G+
Sbjct: 317 LFISSYFVIILSTAIIGIGVGIHQVVPFAFAQRHLDDKLIAEGISFISFVQGIAGVIAGM 376

Query: 62  VFSLAIGKGVAFALATTFIYGVVLLWITVFHYKEP 96
           ++S  +  G+AF+LA T +Y V L+ I +F YK P
Sbjct: 377 IYSATMRNGIAFSLAFTVVYSVSLILIAIFKYKVP 411


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.327    0.142    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 628,268,197
Number of extensions: 22641853
Number of successful extensions: 109977
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 109980
Number of HSP's successfully gapped: 1
Length of query: 112
Length of database: 3,060,696,203
Length adjustment: 79
Effective length of query: 33
Effective length of database: 2,316,436,018
Effective search space: 76442388594
Effective search space used: 76442388594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 126 (53.1 bits)