BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0400.0006.p (349 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9U713.1 A9U713_PHYPA Predicted protein (Fragment) 300 1e-79 B1DLJ0.1 B1DLJ0_9BACL ROK family protein 268 8e-70 Q734N1.1 Q734N1_BACC1 ROK family protein 123 3e-26 C3C4W1.1 C3C4W1_BACTU ROK 122 4e-26 B9ISK9.1 B9ISK9_BACCQ ROK family protein 122 6e-26 >A9U713.1 A9U713_PHYPA Predicted protein (Fragment) Length = 590 Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 140/197 (71%), Positives = 168/197 (85%), Gaps = 2/197 (1%) Query: 152 GAVNQGIMNISDIEELIDVEIEALIREKYGVEVILENDMNLTVYGFYHKQEYEEEKSVAV 211 GAV +G++N+SDI ELI +EA+IR+K+G+EVILENDMN TVYGFY KQ+Y+ EKS+AV Sbjct: 202 GAVYKGVINVSDIPELIHAPLEAIIRDKHGIEVILENDMNSTVYGFYRKQDYDTEKSIAV 261 Query: 212 ATFIXXXXCFPGSGMMVNGHIHRGNSNFAGEISFLPYGMSRAEQFQRLHDRNTFHSTAAH 271 ATF+ PG+G++V+GHIHRGN+ FAGEI+FLPYG+S+AEQ ++LHDR FHS AAH Sbjct: 262 ATFLEG--SLPGAGLIVDGHIHRGNTRFAGEIAFLPYGISQAEQLRQLHDREAFHSLAAH 319 Query: 272 AVSSLIAVMNPEMIALTGSLVQPADTALIRQECLKDIPEMHMPQLMLLKHPEEDYIHGLI 331 AVSSLIAVMNPE IALTGSLVQ D LIRQECLK IPEMHMPQL LL+HP+EDY++GL Sbjct: 320 AVSSLIAVMNPETIALTGSLVQADDIRLIRQECLKYIPEMHMPQLALLEHPDEDYMYGLT 379 Query: 332 RMTLESLSYSYQLVEKR 348 MTLESL+YS QLVEKR Sbjct: 380 TMTLESLAYSLQLVEKR 396 >B1DLJ0.1 B1DLJ0_9BACL ROK family protein Length = 342 Score = 268 bits (684), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 135/346 (39%), Positives = 208/346 (60%), Gaps = 4/346 (1%) Query: 3 MSPIANNTMRVKKMNQELVRQTLKANRKATKAAVAKFTGLSLGTCGSIXXXXXXXXXXXX 62 MS +NT++VKKMN ELV+ LKA ATKA++A T LS+ TCG+I Sbjct: 1 MSSHTHNTIQVKKMNVELVKNALKAQGIATKASIAGLTKLSVATCGTILNELLAIGEIIE 60 Query: 63 XXXXXSNXXXXXXXXXXXXXMDFAFIACIIIKAGLKKHSIEFTVANLAGEVVEKGREEYM 122 +N +F + C++++ HSI +++ NL GE + Sbjct: 61 LEPDGANGGRPAKQYRYNA--NFGCVICLLVRTEGGIHSISYSIVNLLGETISDTTLTLP 118 Query: 123 PLDFTAIDQITGRLVAHYPKIQAIGFGVPGAVNQGIMNISDIEELIDVEIEALIREKYGV 182 +D ID++ L++ +QAIG G+PG V++G++ + D+ +L + + +KYG+ Sbjct: 119 HIDRDVIDRLIEDLISDNENVQAIGIGIPGVVHRGVIGVCDVPDLAGQPVGPYLEDKYGI 178 Query: 183 EVILENDMNLTVYGFYHKQEYEEEKSVAVATFIXXXXCFPGSGMMVNGHIHRGNSNFAGE 242 + +ENDMN+TVYGFYH Q +EE+K+ AVATF FPG+G +V+G I GN+ F GE Sbjct: 179 PITIENDMNMTVYGFYHLQNFEEDKTFAVATFPKNH--FPGAGFIVDGRILSGNTTFGGE 236 Query: 243 ISFLPYGMSRAEQFQRLHDRNTFHSTAAHAVSSLIAVMNPEMIALTGSLVQPADTALIRQ 302 +SFLP+G+SR EQ ++LH + F A ++S+IA++NP IA+TG L + + + + Sbjct: 237 VSFLPFGVSREEQLRQLHTEDGFIRLAVMTLTSIIAIINPVTIAITGELPRESQLKDLHE 296 Query: 303 ECLKDIPEMHMPQLMLLKHPEEDYIHGLIRMTLESLSYSYQLVEKR 348 CLKDIP+ HMPQL++ + + +Y+ GL+ TLESL+Y Q+ EKR Sbjct: 297 GCLKDIPQEHMPQLIIQNNTQREYMTGLVTATLESLTYRLQVTEKR 342 >Q734N1.1 Q734N1_BACC1 ROK family protein Length = 350 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 133/249 (53%), Gaps = 14/249 (5%) Query: 97 LKKHSIEFTVANLAGEVVEKGREEYMPLDFTAIDQITGR---LVAHYPKIQAIGFGVPGA 153 L+K+ +T+ N GEV E+G M +D T ++ ++ L+A +PKI +I GVPG+ Sbjct: 97 LEKNETNYTIFNCLGEVKEQGSTSSMLID-TGVNVLSKHIEGLIATFPKISSISIGVPGS 155 Query: 154 VNQG-IMNISDIEELIDVEIEALIREKYGVEVILENDMNLTVYGFYHKQEYEEEKSVAVA 212 V+ G I I E+ + +++ + E++ + V++ENDMN V G YHK E S V Sbjct: 156 VDDGRIFYIPGYEKFQNFNLKSHLEEQFSIPVVIENDMNAAVLG-YHKNTGNNENSSLV- 213 Query: 213 TFIXXXXCFPGSGMMVNGHIHRGNSNFAGEISFLP-YGMSRAEQFQRLHDRNTFHSTAAH 271 ++ PG+G+MVNG + RG++ F+GEISF+P Y Q R D N Sbjct: 214 -YLYSGQNGPGAGIMVNGDVVRGSTFFSGEISFVPQYDNKNFLQALRSEDSNNPEEYNID 272 Query: 272 AVSSL----IAVMNPEMIALTGSLVQPADTALIRQECLKDIPEMHMPQLMLLKHPEEDYI 327 A++ L IA++NP V I + C + IP H+P++ + + +EDY+ Sbjct: 273 AITRLIATCIAIINPHAFIFCDDEVNQFVIDQIVKTCPQYIPAEHIPKIT-VSNWKEDYL 331 Query: 328 HGLIRMTLE 336 +GL + L+ Sbjct: 332 YGLKSLGLD 340 >C3C4W1.1 C3C4W1_BACTU ROK Length = 346 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 132/249 (53%), Gaps = 14/249 (5%) Query: 97 LKKHSIEFTVANLAGEVVEKGREEYMPLDFTAIDQITGR---LVAHYPKIQAIGFGVPGA 153 L+K+ +T+ N GEV E+G M +D T ++ ++ L+A +PKI +I GVPG+ Sbjct: 93 LEKNETNYTIFNCLGEVKEQGSTSSMLID-TGVNLLSKHIEGLIATFPKISSISIGVPGS 151 Query: 154 VNQG-IMNISDIEELIDVEIEALIREKYGVEVILENDMNLTVYGFYHKQEYEEEKSVAVA 212 V+ G I I E+ + +++ + EK+ + V++ENDMN V G+Y + S+ Sbjct: 152 VDNGRIFYIPGYEKFQNFNLKSHLEEKFSIPVVIENDMNAAVLGYYKNTGNYDNSSLV-- 209 Query: 213 TFIXXXXCFPGSGMMVNGHIHRGNSNFAGEISFLP-YGMSRAEQFQRLHDRNTFHSTAAH 271 ++ PG+G+M+NG + RG++ F+GEISF+P Y Q R D N Sbjct: 210 -YLYSGQNGPGAGIMINGDVVRGSTFFSGEISFVPQYDNKNFLQASRSEDSNNPEEYNID 268 Query: 272 AVSSL----IAVMNPEMIALTGSLVQPADTALIRQECLKDIPEMHMPQLMLLKHPEEDYI 327 A++ L IA++NP V I + C + IP H+P++ + + +EDY+ Sbjct: 269 AITRLIATCIAIINPHGFIFCDDEVNQFVIDQIVKSCPQYIPAEHIPKIT-VSNWKEDYL 327 Query: 328 HGLIRMTLE 336 +GL + L+ Sbjct: 328 YGLKSLGLD 336 >B9ISK9.1 B9ISK9_BACCQ ROK family protein Length = 350 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 132/249 (53%), Gaps = 14/249 (5%) Query: 97 LKKHSIEFTVANLAGEVVEKGREEYMPLDFTAIDQITGR---LVAHYPKIQAIGFGVPGA 153 L+K+ +T+ N GEV E+G M +D T ++ ++ L+A +PKI +I GVPG+ Sbjct: 97 LEKNETNYTIFNCLGEVKEQGSTSSMLID-TGVNVLSKHIEGLIATFPKISSISIGVPGS 155 Query: 154 VNQG-IMNISDIEELIDVEIEALIREKYGVEVILENDMNLTVYGFYHKQEYEEEKSVAVA 212 V+ G I I E+ + +++ + E++ + V++ENDMN V G+Y + S+ Sbjct: 156 VDNGRIFYIPGYEKFQNFNLKSHLEEQFSIPVVIENDMNAAVLGYYKNTGNYDNSSLV-- 213 Query: 213 TFIXXXXCFPGSGMMVNGHIHRGNSNFAGEISFLP-YGMSRAEQFQRLHDRNTFHSTAAH 271 ++ PG+G+MVNG + RG++ F+GEISF+P Y Q R D N Sbjct: 214 -YLYSGQNGPGAGIMVNGDVVRGSTFFSGEISFVPQYNKKNFLQALRSEDSNNPEEYNID 272 Query: 272 AVSSL----IAVMNPEMIALTGSLVQPADTALIRQECLKDIPEMHMPQLMLLKHPEEDYI 327 A++ L IA++NP V I + C + IP H+P++ + + +EDY+ Sbjct: 273 AITRLIATCIAIINPHAFIFCDDEVNQFVIEQIVKSCPQYIPAEHIPKIT-VSNWKEDYL 331 Query: 328 HGLIRMTLE 336 +GL + L+ Sbjct: 332 YGLKSLGLD 340 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,712,663,092 Number of extensions: 64749977 Number of successful extensions: 154524 Number of sequences better than 1.0e-05: 108 Number of HSP's gapped: 154538 Number of HSP's successfully gapped: 108 Length of query: 349 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 213 Effective length of database: 1,779,438,163 Effective search space: 379020328719 Effective search space used: 379020328719 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)