BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0400.0004.p (205 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGY9.1 B3KGY9_9BACI Phosphoglycerate mutase 221 2e-56 C3BJJ5.1 C3BJJ5_9BACI Phosphoglycerate mutase 190 7e-47 C3AKS1.1 C3AKS1_BACMY Phosphoglycerate mutase 190 7e-47 B7ITG5.1 B7ITG5_BACC2 Phosphoglycerate mutase family protein 189 1e-46 Q3ES27.1 Q3ES27_BACTI Phosphoglycerate mutase family protein 189 1e-46 >B3KGY9.1 B3KGY9_9BACI Phosphoglycerate mutase Length = 210 Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 99/199 (49%), Positives = 137/199 (68%) Query: 5 LYLTRHGETEWNVVHRMQGFEDSPLTALGVRQAESLKTALDAVPLDIVYTSPSPRAIRTA 64 +YL RHG+TEWNV HR QG +DSPLT LG+RQAE L AL P D +++S S RA TA Sbjct: 7 IYLVRHGQTEWNVQHRFQGHKDSPLTKLGIRQAEWLGEALQHDPFDFIFSSTSSRAYHTA 66 Query: 65 KLICGDRNIPLETSEALMEMGFGIWEGRVHADVEAQFPEQWNLFWNDPEKFAITDSETYT 124 +LI G+RN+ + + E+ G+WEG + + +P+Q + FWN PE F + SET+ Sbjct: 67 ELIKGNRNVQITACDKFREINLGVWEGEIQERISDMYPQQLDHFWNHPELFGVEGSETFH 126 Query: 125 QVHDRAIGFLNEIVQKHPGKSVLIVTHTIVVKMLMAHFAGSELKQLWKSPEILPTSLSRI 184 +V +RA+ LNEI+ +PG +L+VTHT+VVK+L+A+F G L +LW P I PT LS+I Sbjct: 127 EVRERAVNKLNEIIASNPGSRILLVTHTVVVKLLVAYFEGRSLDRLWDLPYIHPTCLSKI 186 Query: 185 DITDDAAEIILHGDVKHYK 203 ++TDD I+LHGDV HY+ Sbjct: 187 ELTDDVPSILLHGDVSHYR 205 >C3BJJ5.1 C3BJJ5_9BACI Phosphoglycerate mutase Length = 205 Score = 190 bits (482), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 87/205 (42%), Positives = 130/205 (63%) Query: 1 MSMKLYLTRHGETEWNVVHRMQGFEDSPLTALGVRQAESLKTALDAVPLDIVYTSPSPRA 60 M LY+TRHGETEWNV RMQG ++S LT G+ QA+ L + +PL +Y+SPS R Sbjct: 1 MKTTLYVTRHGETEWNVAKRMQGRKNSNLTEKGILQAKQLGDHIKDIPLHAIYSSPSGRT 60 Query: 61 IRTAKLICGDRNIPLETSEALMEMGFGIWEGRVHADVEAQFPEQWNLFWNDPEKFAITDS 120 + TA+LI G+RNIP+ E E+ GIWEG++ D+EAQ+PE+ + FWN+P +F T Sbjct: 61 MHTAELIKGERNIPIIADENFYEINMGIWEGQMLVDLEAQYPEEVHTFWNEPHRFCSTSG 120 Query: 121 ETYTQVHDRAIGFLNEIVQKHPGKSVLIVTHTIVVKMLMAHFAGSELKQLWKSPEILPTS 180 E + VH R I +N +++KH G+S+LIV+H K+L+ HF G ++++W P + S Sbjct: 121 ENFYDVHSRVIEGVNLLLEKHKGESILIVSHAAAAKLLVGHFTGLSVERVWDDPFMHSAS 180 Query: 181 LSRIDITDDAAEIILHGDVKHYKNL 205 LS I+ A + D+ H++ + Sbjct: 181 LSIIEFEGKEASVKQFADISHFQQV 205 >C3AKS1.1 C3AKS1_BACMY Phosphoglycerate mutase Length = 205 Score = 190 bits (482), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 87/205 (42%), Positives = 130/205 (63%) Query: 1 MSMKLYLTRHGETEWNVVHRMQGFEDSPLTALGVRQAESLKTALDAVPLDIVYTSPSPRA 60 M LY+TRHGETEWNV RMQG ++S LT G+ QA+ L + +PL +Y+SPS R Sbjct: 1 MKTTLYVTRHGETEWNVAKRMQGRKNSNLTEKGILQAKQLGDHIKDIPLHAIYSSPSGRT 60 Query: 61 IRTAKLICGDRNIPLETSEALMEMGFGIWEGRVHADVEAQFPEQWNLFWNDPEKFAITDS 120 + TA+LI G+RNIP+ E E+ GIWEG++ D+EAQ+PE+ + FWN+P +F T Sbjct: 61 MHTAELIKGERNIPIIADENFYEINMGIWEGQMLVDLEAQYPEEVHTFWNEPHRFCSTSG 120 Query: 121 ETYTQVHDRAIGFLNEIVQKHPGKSVLIVTHTIVVKMLMAHFAGSELKQLWKSPEILPTS 180 E + VH R I +N +++KH G+S+LIV+H K+L+ HF G ++++W P + S Sbjct: 121 ENFYDVHSRVIEGVNLLLEKHKGESILIVSHAAAAKLLVGHFTGLSVERVWDDPFMHSAS 180 Query: 181 LSRIDITDDAAEIILHGDVKHYKNL 205 LS I+ A + D+ H++ + Sbjct: 181 LSIIEFEGKEASVKQFADISHFQQV 205 >B7ITG5.1 B7ITG5_BACC2 Phosphoglycerate mutase family protein Length = 203 Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 86/203 (42%), Positives = 131/203 (64%) Query: 1 MSMKLYLTRHGETEWNVVHRMQGFEDSPLTALGVRQAESLKTALDAVPLDIVYTSPSPRA 60 M +Y+TRHGETEWNVV RMQG ++S LT G+ QA+ L + +P+ +Y+SPS R Sbjct: 1 MKTTIYVTRHGETEWNVVKRMQGRKNSALTENGIVQAKQLGNRMKDLPIHAIYSSPSERT 60 Query: 61 IRTAKLICGDRNIPLETSEALMEMGFGIWEGRVHADVEAQFPEQWNLFWNDPEKFAITDS 120 + TA+LI G+R+IP+ E E+ GIWEG+ AD+E QFPE+ +LFWN+P F T Sbjct: 61 LHTAELIKGERDIPIIADEHFYEINMGIWEGQTIADIEKQFPEEVHLFWNEPHLFQSTSG 120 Query: 121 ETYTQVHDRAIGFLNEIVQKHPGKSVLIVTHTIVVKMLMAHFAGSELKQLWKSPEILPTS 180 E + V++R I + +++KH G+S+LIV+H K+L+ HFAG E++ +W P + S Sbjct: 121 ENFEAVYERVIEGMQLLLEKHKGQSILIVSHAAAAKLLVGHFAGIEIENVWDDPFMHSAS 180 Query: 181 LSRIDITDDAAEIILHGDVKHYK 203 LS I+ + ++ D+ H++ Sbjct: 181 LSIIEFEEGIGKVKQFADISHFQ 203 >Q3ES27.1 Q3ES27_BACTI Phosphoglycerate mutase family protein Length = 203 Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 86/203 (42%), Positives = 131/203 (64%) Query: 1 MSMKLYLTRHGETEWNVVHRMQGFEDSPLTALGVRQAESLKTALDAVPLDIVYTSPSPRA 60 M +Y+TRHGETEWNVV RMQG ++S LT G+ QA+ L + +P+ +Y+SPS R Sbjct: 1 MKTTIYVTRHGETEWNVVKRMQGRKNSALTENGIVQAKQLGNRMKDLPIHAIYSSPSERT 60 Query: 61 IRTAKLICGDRNIPLETSEALMEMGFGIWEGRVHADVEAQFPEQWNLFWNDPEKFAITDS 120 + TA+LI G+R+IP+ E E+ GIWEG+ AD+E QFPE+ +LFWN+P F T Sbjct: 61 LHTAELIKGERDIPIIADEHFYEINMGIWEGQTIADIEKQFPEEVHLFWNEPHLFQSTSG 120 Query: 121 ETYTQVHDRAIGFLNEIVQKHPGKSVLIVTHTIVVKMLMAHFAGSELKQLWKSPEILPTS 180 E + V++R I + +++KH G+S+LIV+H K+L+ HFAG E++ +W P + S Sbjct: 121 ENFEAVYERVIEGMQLLLEKHKGQSILIVSHAAAAKLLVGHFAGIEIENVWDDPFMHSAS 180 Query: 181 LSRIDITDDAAEIILHGDVKHYK 203 LS I+ + ++ D+ H++ Sbjct: 181 LSIIEFEEGIGKVKQFADISHFQ 203 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.134 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,252,213,093 Number of extensions: 47922949 Number of successful extensions: 123453 Number of sequences better than 1.0e-05: 3150 Number of HSP's gapped: 122358 Number of HSP's successfully gapped: 3203 Length of query: 205 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 76 Effective length of database: 1,845,385,268 Effective search space: 140249280368 Effective search space used: 140249280368 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)