BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0400.0001.p
         (123 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q4A0P8.1 Q4A0P8_STAS1 Putative uncharacterized protein                174   2e-42
C2D3B7.1 C2D3B7_LACBR 4-carboxymuconolactone decarboxylase            169   8e-41
C0XHB4.1 C0XHB4_LACHI 4-carboxymuconolactone decarboxylase            169   8e-41
C4GEL2.1 C4GEL2_9NEIS Putative uncharacterized protein                168   1e-40
Q9CFE3.1 Q9CFE3_LACLA Putative uncharacterized protein yphJ           168   1e-40

>Q4A0P8.1 Q4A0P8_STAS1 Putative uncharacterized protein
          Length = 106

 Score =  174 bits (441), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/104 (77%), Positives = 89/104 (85%)

Query: 20  EKQTAGRDNLGEFAPKFAELNDDVLFGEVWSREKELSPRDRSMITVATLISEGNFEQLTP 79
           +KQTAGRDNLG FAPKFAELNDDVLFGEVWSRE ELSP  RS+IT+  LI+  NFEQLT 
Sbjct: 3   KKQTAGRDNLGSFAPKFAELNDDVLFGEVWSRESELSPYKRSLITITALITGRNFEQLTA 62

Query: 80  HLHKAKANGITQEEIAEIITHLSFYAGWPKAWSAFNIAKQIFND 123
           HL   K NG+T+EE+AEIITHLSFY GWPKAWSAFNIAK I+ND
Sbjct: 63  HLKIGKENGVTKEEVAEIITHLSFYVGWPKAWSAFNIAKDIYND 106


>C2D3B7.1 C2D3B7_LACBR 4-carboxymuconolactone decarboxylase
          Length = 106

 Score =  169 bits (427), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 93/105 (88%)

Query: 19  LEKQTAGRDNLGEFAPKFAELNDDVLFGEVWSREKELSPRDRSMITVATLISEGNFEQLT 78
           ++KQTAGRD+LG+FAPKFAELNDDVLFG+VW+REKELS RDRSMIT A+L+S+G F QL 
Sbjct: 2   VKKQTAGRDHLGDFAPKFAELNDDVLFGQVWAREKELSSRDRSMITCASLMSQGLFPQLE 61

Query: 79  PHLHKAKANGITQEEIAEIITHLSFYAGWPKAWSAFNIAKQIFND 123
            H+  AK NG+T+EE+ E+ITHL+FYAGWPKAWSAF +AK+I+ D
Sbjct: 62  DHMKMAKKNGVTKEEMVELITHLAFYAGWPKAWSAFGLAKKIYTD 106


>C0XHB4.1 C0XHB4_LACHI 4-carboxymuconolactone decarboxylase
          Length = 106

 Score =  169 bits (427), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 93/105 (88%)

Query: 19  LEKQTAGRDNLGEFAPKFAELNDDVLFGEVWSREKELSPRDRSMITVATLISEGNFEQLT 78
           ++KQTAGRD+LG+FAPKFAELNDDVLFG+VW+REKELS RDRSMIT A+L+S+G F QL 
Sbjct: 2   VKKQTAGRDHLGDFAPKFAELNDDVLFGQVWAREKELSSRDRSMITCASLMSQGLFPQLE 61

Query: 79  PHLHKAKANGITQEEIAEIITHLSFYAGWPKAWSAFNIAKQIFND 123
            H+  AK NG+T+EE+ E+ITHL+FYAGWPKAWSAF +AK+I+ D
Sbjct: 62  DHMKMAKKNGVTKEEMVELITHLAFYAGWPKAWSAFGLAKKIYTD 106


>C4GEL2.1 C4GEL2_9NEIS Putative uncharacterized protein
          Length = 109

 Score =  168 bits (426), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 76/103 (73%), Positives = 90/103 (87%)

Query: 20  EKQTAGRDNLGEFAPKFAELNDDVLFGEVWSREKELSPRDRSMITVATLISEGNFEQLTP 79
           +KQTAGRD+LG FAPKFAELNDDVLFG+VWSRE EL+P  RS+IT+A LIS GNFEQL  
Sbjct: 3   KKQTAGRDHLGTFAPKFAELNDDVLFGQVWSREAELAPHTRSLITIAALISGGNFEQLPA 62

Query: 80  HLHKAKANGITQEEIAEIITHLSFYAGWPKAWSAFNIAKQIFN 122
           HL+  K NGITQ+EIAE+ITHL+FY GWPKAWSAFN+AK+++ 
Sbjct: 63  HLNIGKQNGITQQEIAEVITHLAFYVGWPKAWSAFNLAKEVYG 105


>Q9CFE3.1 Q9CFE3_LACLA Putative uncharacterized protein yphJ
          Length = 102

 Score =  168 bits (425), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 89/102 (87%)

Query: 19  LEKQTAGRDNLGEFAPKFAELNDDVLFGEVWSREKELSPRDRSMITVATLISEGNFEQLT 78
           +EKQTAG + LGEFAPKFAELNDD+LFGEVWSREKELS  +RS+IT+  LI+ GNFEQL 
Sbjct: 1   MEKQTAGHEQLGEFAPKFAELNDDILFGEVWSREKELSAHERSVITITALIAGGNFEQLN 60

Query: 79  PHLHKAKANGITQEEIAEIITHLSFYAGWPKAWSAFNIAKQI 120
            H+ K K NGI+QEEI+EIITHLSFY GWPKAWSAFNIAK+I
Sbjct: 61  FHMAKGKENGISQEEISEIITHLSFYVGWPKAWSAFNIAKKI 102


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.134    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 814,449,102
Number of extensions: 31685362
Number of successful extensions: 71924
Number of sequences better than 1.0e-05: 702
Number of HSP's gapped: 71653
Number of HSP's successfully gapped: 731
Length of query: 123
Length of database: 3,060,696,203
Length adjustment: 89
Effective length of query: 34
Effective length of database: 2,222,225,868
Effective search space: 75555679512
Effective search space used: 75555679512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)