BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0397.0039.p
         (142 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DAB2.1 B1DAB2_9BACL Putative uncharacterized protein                154   3e-36
B8I290.1 B8I290_CLOCE Putative uncharacterized protein                 83   7e-15

>B1DAB2.1 B1DAB2_9BACL Putative uncharacterized protein
          Length = 138

 Score =  154 bits (388), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 74/138 (53%), Positives = 97/138 (70%), Gaps = 2/138 (1%)

Query: 4   KGIRIIVLLLLLFSMAVPVQSTSAASKSIKVKVTLVSAELTENNHVGNEWYTTAYINGKE 63
           K +++ + ++ +F  A+ +Q  SA+ K+ K KVTLVS EL ENNHVGNEW T AY+NGKE
Sbjct: 3   KLLKVAMAVMAVF--ALLIQPVSASDKTTKFKVTLVSVELVENNHVGNEWLTKAYVNGKE 60

Query: 64  ISEGSSVVLDLKSTESVKLKAYAEEQDKIPEXXXXXXXXXXXXXXXXINKAVEVTVVENR 123
           + E  S+ L LKST+S+KLKAYAEEQDKIP+                +NKA++V V ENR
Sbjct: 61  VQENKSITLSLKSTDSIKLKAYAEEQDKIPDSNSANDAVKASSITKTVNKALKVVVTENR 120

Query: 124 GRYSGNTATWTFTFKVQK 141
           GRYSGNTA W FT+K++K
Sbjct: 121 GRYSGNTAEWKFTYKIEK 138


>B8I290.1 B8I290_CLOCE Putative uncharacterized protein
          Length = 141

 Score = 83.2 bits (204), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 2/138 (1%)

Query: 7   RIIVLLLLLFSMAVPVQSTSAASKSIKVKVTLVSAELTENNHVGNEWYTTAYINGKEISE 66
           RI+  LL++  +     + + ++ + KVKVTL S    +N+HVGNEW   A +N K I E
Sbjct: 4   RILSFLLIITLILTCFTNLAYSAANTKVKVTLKSVVCIKNDHVGNEWGFGATVNKKTIYE 63

Query: 67  GSSVVLDLKSTESVKLKAYAEEQDKIPE--XXXXXXXXXXXXXXXXINKAVEVTVVENRG 124
           G ++ +       + + + AEE D  P+                   N    VTV+ENRG
Sbjct: 64  GETIEISTTPKGKITIVSMAEEDDSYPDYGSKTLAVSVSKLKANKSTNYTSNVTVIENRG 123

Query: 125 RYSGNTATWTFTFKVQKQ 142
           RYSGN+A W FT+ ++K+
Sbjct: 124 RYSGNSAVWKFTYVIKKK 141


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.310    0.125    0.333 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 608,448,819
Number of extensions: 17334962
Number of successful extensions: 39969
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 39967
Number of HSP's successfully gapped: 2
Length of query: 142
Length of database: 3,060,696,203
Length adjustment: 105
Effective length of query: 37
Effective length of database: 2,071,489,628
Effective search space: 76645116236
Effective search space used: 76645116236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 126 (53.1 bits)