BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0038.p (608 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB32.1 B3KB32_9BACI ABC transporter related 511 e-142 C2WWK5.1 C2WWK5_BACCE ABC transporter 482 e-134 B1YK05.1 B1YK05_EXIS2 ABC transporter related 392 e-107 C4L3X9.1 C4L3X9_EXISA ABC transporter related 368 1e-99 A1HUG2.1 A1HUG2_9FIRM ABC transporter related 333 3e-89 >B3KB32.1 B3KB32_9BACI ABC transporter related Length = 626 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 291/566 (51%), Positives = 373/566 (65%), Gaps = 21/566 (3%) Query: 3 LIKVKNIRKEWNGIPLFANVSFEIAEGERALLFGRNGIGKTTLLQGLLGRHPFDEGSVYY 62 ++K K+I E G PLF + E+AEGER L+GRNG GKTTLL L G G V Sbjct: 2 ILKAKDISMELQGKPLFEGIQLEVAEGERIALYGRNGTGKTTLLSILAGELEPTSGVVEA 61 Query: 63 GLPPEEWGVLDQQLELQ-SDMSALDYVLSGS-PELDDLKCKIERLGRLLQEADGGD---- 116 LP E WG L QQ E + DMSA+D V S S P L +LK RL + Q +GG Sbjct: 62 ILPRERWGWLRQQDEPEEGDMSAIDTVRSRSHPTLWELKL---RLAGVEQRMNGGSAAEM 118 Query: 117 EALVAEYGEVYERYLQLDGYGWEAKAEKCLSQLMLDAAVWNLPYRQLSGGQKTRVQLAAL 176 E L+ YG + ERY +G+ WE + EK ++ L + VW + YR+LSGGQKT+V L+AL Sbjct: 119 EQLLELYGNLLERYESRNGFQWETEVEKAMTMLGIGPEVWPVSYRELSGGQKTKVMLSAL 178 Query: 177 LARQPKLLVLDEPTNHLDEETMAWLEEW-VRDYPGTVFYVSHDRTFIERTATAVLELGPQ 235 L PK L+LDEPTNHLD E++ WLE+W V Y GTV +VSHDR FI+R ATAV EL + Sbjct: 179 LVSAPKFLLLDEPTNHLDSESLVWLEQWLVSTYKGTVLFVSHDREFIDRVATAVCELTSE 238 Query: 236 GCRRYPGAYTKYREQKEIEARTLAVQYRXXXXXXXXXXXSIRRYAEWFQQAHRAAGQND- 294 RRY G YT YR +KE E R YR SIRRY EWF +AH AAG + Sbjct: 239 ELRRYRGGYTDYRREKERELREQETLYRKQELARKALEESIRRYEEWFHKAHNAAGDVNE 298 Query: 295 ------FRRAKAKKNVSRLHAKEASLERLELNRVERPQAAPQLSMKLEGEVFRGDALLDM 348 F +AKAKKN+SR HAKE +LERLE RV++P++ P+L+M+LEGE F G L+ + Sbjct: 299 VKITASFYKAKAKKNISRYHAKEKALERLEAERVDKPRSGPKLNMELEGEAFGGRTLVQV 358 Query: 349 SGVRYAYGGGAALLENFNLTLRRGDRLAVLGPNGAGKSTLLKLIAGLLAPDRGEIRRHPR 408 + + YG L L+RGDRLAV GPNG+GK+TLLKL+ G + P G I R+P Sbjct: 359 KDICFGYGY-QQLFNKLTFYLKRGDRLAVRGPNGSGKTTLLKLLLGEIDPQEGRITRNPS 417 Query: 409 TRVGYFAQELDNLPLSSTILDSLLELPGMTQTEARTILGCFMFRREDVFKRIGDLSLGEK 468 ++GYF+QEL+ L +T+LDSLL +PGMT++ ART+LG F+FRR+DVFK++G LS+GEK Sbjct: 418 VKIGYFSQELEGLEPETTLLDSLLVIPGMTESRARTLLGSFLFRRDDVFKKMGQLSMGEK 477 Query: 469 CRVAFLRLYFGRANLLVLDEPTNYLDIDTRERVEEALAAYPGGLVIVSHDRYLHAAVANR 528 CR AFL+LYF A+LLVLDEP+NYLD+DTRE +E+ L ++PG + +VSHDRYL +ANR Sbjct: 478 CRTAFLKLYFSGAHLLVLDEPSNYLDVDTREVIEQVLVSFPGAIALVSHDRYLVRKIANR 537 Query: 529 LLLLERGSRPRLFPGTY---EEYAAK 551 LL L+ G P F G+ EE AA+ Sbjct: 538 LLTLKPGEAPAWFEGSVGEEEEQAAR 563 >C2WWK5.1 C2WWK5_BACCE ABC transporter Length = 629 Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust. Identities = 238/555 (42%), Positives = 355/555 (63%), Gaps = 10/555 (1%) Query: 1 MTLIKVKNIRKEWNGIPLFANVSFEIAEGERALLFGRNGIGKTTLLQGLLGRHPFDEGSV 60 M ++K + + N +F NV +I E +R + G NG+GKTTLL+ L G+ ++G + Sbjct: 14 MLMLKAEGCKATRNEKVIFENVHLDIEEKQRVAIIGSNGVGKTTLLKALFGKVQLEKGKI 73 Query: 61 YYGLPPEEWGVLDQQLELQSDMSALDYVLSGSPELDDLKCKIERLGRLLQEADGGD-EAL 119 P + WG ++Q EL +D++ +YV PEL + KI+ L + + + E L Sbjct: 74 MRRYPADAWGWVEQMEEL-ADVTLYEYVSLVRPELATYQKKIDELQKKMSIVTKEELEGL 132 Query: 120 VAEYGEVYERYLQLDGYGWEAKAEKCLSQLMLDAAVWNLPYRQLSGGQKTRVQLAALLAR 179 + EY YE ++ +DG+ ++ + EK LSQL L A W +PY QLSGG+KTR QLA + + Sbjct: 133 MEEYTTFYECFIAMDGFQFQTEIEKHLSQLQLPPASWYMPYSQLSGGEKTRAQLARTMLK 192 Query: 180 QPKLLVLDEPTNHLDEETMAWLEEWVRDYPGTVFYVSHDRTFIERTATAVLELGPQGCRR 239 PK L+LDEPTNHLD++ + WL W++ TV +VSHDR FI++ A EL G ++ Sbjct: 193 NPKFLILDEPTNHLDKDAIEWLTNWIKASDTTVLFVSHDRHFIDQVADVTYELTAGGTKK 252 Query: 240 YPGAYTKYREQKEIEARTLAVQYRXXXXXXXXXXXSIRRYAEWFQQAHRAAGQNDFR--- 296 Y G Y+ Y++QK+ E T Y SI RY +WFQQA +++G++D Sbjct: 253 YKGGYSAYKKQKDHEILTHQKLYAKQEQKKKELLESINRYKQWFQQAQKSSGKDDSAAQK 312 Query: 297 ---RAKAKKNVSRLHAKEASLERLELNRVERPQAAPQLSMKLEGEVFRGDALLDMSGVRY 353 ++A K+ SR A E +L+RLE N++E+ + A ++ + F LL + + + Sbjct: 313 NNFSSRATKSASRFKALEKALDRLEKNKIEKYKEADRVKLDFHETDFGASRLLQIRQMTF 372 Query: 354 AYGGGAALLENFNLTLRRGDRLAVLGPNGAGKSTLLKLIAGLLAPDRGEIRRHPRTRVGY 413 Y G + ++FNL ++R +RLAV+GPNG+GK+TLL+LI G P+ G ++ HPR +VGY Sbjct: 373 GYDG-IPIFKDFNLDVKRSERLAVIGPNGSGKTTLLQLILGRKQPEEGMVQLHPRCKVGY 431 Query: 414 FAQELDNLPLSSTILDSLLELPGMTQTEARTILGCFMFRREDVFKRIGDLSLGEKCRVAF 473 F+QEL +L S TILD ++++P +TQTEARTILGCF+F+R++V KRI LS+GEKCRVAF Sbjct: 432 FSQELSDLDGSDTILDHIMKIPNLTQTEARTILGCFLFKRDNVLKRISHLSMGEKCRVAF 491 Query: 474 LRLYFGRANLLVLDEPTNYLDIDTRERVEEALAAYPGGLVIVSHDRYLHAAVANRLLLLE 533 ++LYF A+LL+LDEP NYLDI+TRE +EEAL +PG ++ VSHD+Y +A+R+L L Sbjct: 492 VKLYFSGADLLILDEPNNYLDIETRETIEEALQEFPGTIIAVSHDKYFLRKIADRILDLG 551 Query: 534 RGSRPRLFPGTYEEY 548 S+ R+F G+Y +Y Sbjct: 552 STSK-RVFEGSYSDY 565 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 124/261 (47%), Gaps = 47/261 (18%) Query: 3 LIKVKNIRKEWNGIPLFANVSFEIAEGERALLFGRNGIGKTTLLQGLLGRHPFDEGSVYY 62 L++++ + ++GIP+F + + ++ ER + G NG GKTTLLQ +LGR +EG V Sbjct: 364 LLQIRQMTFGYDGIPIFKDFNLDVKRSERLAVIGPNGSGKTTLLQLILGRKQPEEGMV-- 421 Query: 63 GLPPEEWGVLDQQLELQSDMSALDYVLSGSPELDDLKCKIERLGRLLQEADGGDEALVAE 122 L P +CK+ + L + DG D L Sbjct: 422 QLHP--------------------------------RCKVGYFSQELSDLDGSDTIL--- 446 Query: 123 YGEVYERYLQLDGYGWEAKAEKCLSQLML--DAAVWNLPYRQLSGGQKTRVQLAALLARQ 180 + +++ + +A L + D + + + LS G+K RV L Sbjct: 447 -----DHIMKIPNLT-QTEARTILGCFLFKRDNVLKRISH--LSMGEKCRVAFVKLYFSG 498 Query: 181 PKLLVLDEPTNHLDEETMAWLEEWVRDYPGTVFYVSHDRTFIERTATAVLELGPQGCRRY 240 LL+LDEP N+LD ET +EE ++++PGT+ VSHD+ F+ + A +L+LG R + Sbjct: 499 ADLLILDEPNNYLDIETRETIEEALQEFPGTIIAVSHDKYFLRKIADRILDLGSTSKRVF 558 Query: 241 PGAYTKYREQKEIEARTLAVQ 261 G+Y+ Y +K+ + L V+ Sbjct: 559 EGSYSDYEREKQNKESKLTVE 579 >B1YK05.1 B1YK05_EXIS2 ABC transporter related Length = 556 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 218/537 (40%), Positives = 313/537 (58%), Gaps = 32/537 (5%) Query: 3 LIKVKNIRKEWNGIPLFANVSFEIAEGERALLFGRNGIGKTTLLQGLLGRHPFDEGSVYY 62 ++ + ++R + LF ++SF I GE L G NG+GKTTL Q +L + EG+++ Sbjct: 5 ILSIHDVRFDLPEQTLFQHISFSIRPGEHVALVGANGVGKTTLFQLILKQLQPTEGNIFR 64 Query: 63 GLPPEEWGVLDQQLELQSDMSALDYVLSGSPELDDLKCKIERLGRLLQEAD-----GGDE 117 G G + Q L S +P + RL+++AD + Sbjct: 65 GYTT--IGHVAQHLT------------SSAPAI-----------RLVEQADRLRYQAREA 99 Query: 118 ALVAEYGEVYERYLQLDGYGWEAKAEKCLSQLMLDAAVWNLPYRQLSGGQKTRVQLAALL 177 AL A E+Y+ L LD + EA A + L ++ L VW + LSGG++TR+QLA LL Sbjct: 100 ALHASSLEIYQTALDLDAFSLEADAARALKEVQLPEHVWLHSFDTLSGGEQTRIQLACLL 159 Query: 178 ARQPKLLVLDEPTNHLDEETMAWLEEWVRDYPGTVFYVSHDRTFIERTATAVLELGPQGC 237 +QP ++LDEPTNHLD ET+ WL W+ T+ YVSH+R FI+ TA AV+EL P Sbjct: 160 VKQPDFILLDEPTNHLDSETLDWLINWINQTAITILYVSHERAFIDATADAVIELTPHQA 219 Query: 238 RRYPGAYTKYREQKEIEARTLAVQYRXXXXXXXXXXXSIRRYAEWFQQAHRAAGQND-FR 296 RY G Y YR+QKE E T +Y I +Y W QQA A + D + Sbjct: 220 TRYKGNYQAYRQQKEQERLTQEREYEKQEKTRKELKRMITQYQNWHQQAVAHASERDPYA 279 Query: 297 RAKAKKNVSRLHAKEASLERLELNRVERPQAAPQLSMKLEGEVFRGDALLDMSGVRYAYG 356 + KA K + AKE LE+ +RV +P+ + + E F L + V ++Y Sbjct: 280 KKKAAKQAKKFKAKEKQLEQTIDHRVAKPEHPASVHVAFEAASFAAKQLFTLDKVAFSYD 339 Query: 357 GGAALLENFNLTLRRGDRLAVLGPNGAGKSTLLKLIAGLLAPDRGEIRRHPRTRVGYFAQ 416 G L + ++++GDR+AV+G NG+GK+TLL+LI G L P G I RHP VGYF+Q Sbjct: 340 G-RTLFKKLTFSMQQGDRIAVIGRNGSGKTTLLRLIQGELDPMEGTITRHPALTVGYFSQ 398 Query: 417 ELDNLPLSSTILDSLLELPGMTQTEARTILGCFMFRREDVFKRIGDLSLGEKCRVAFLRL 476 L NLP+S ++LD+LL+ +++T+ART+L CF+FRR+ V+K I + S+GE+CR+AFLRL Sbjct: 399 ALSNLPVSGSLLDALLQETTISETDARTLLACFLFRRDQVYKPIAEASMGERCRIAFLRL 458 Query: 477 YFGRANLLVLDEPTNYLDIDTRERVEEALAAYPGGLVIVSHDRYLHAAVANRLLLLE 533 YF A LL+LDEPTNYLD+ TRE++E AL +PG L+ VSHDRY + ++NR + L+ Sbjct: 459 YFSGARLLILDEPTNYLDLTTREQIEAALDVFPGELLFVSHDRYFNNRLSNRTITLD 515 >C4L3X9.1 C4L3X9_EXISA ABC transporter related Length = 565 Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 206/522 (39%), Positives = 307/522 (58%), Gaps = 23/522 (4%) Query: 3 LIKVKNIRKEWNGIPLFANVSFEIAEGERALLFGRNGIGKTTLLQGLLGRHPFDEGSV-Y 61 ++ VK +R +++ PLF VSFE+ GERA+LFG NG GKTTL + + G G + Sbjct: 1 MLAVKQVRFDYDRKPLFDAVSFEVTAGERAVLFGLNGSGKTTLFRLVTGELTPQAGKIEC 60 Query: 62 YGLPPEEWGVLDQQLELQSDMSALDYVLSGSPELDDLKCKIERLGRLLQEADGGDEALVA 121 G E G++ Q +E +DM+ L++ + PE R L ++ GDE V Sbjct: 61 LG----EVGLVRQTIE-STDMTVLEWTMRSDPE---------RYA-LYEDVSSGDEMRVM 105 Query: 122 EYGEVYERYLQLDGYGWEAKAEKCLSQLMLDAAVWNLPYRQLSGGQKTRVQLAALLARQP 181 YER L LD Y E +A + L++L L+ ++ +LSGG+KTR QL+ L ++ Sbjct: 106 R---SYERALALDVYNLEQEATRALTRLGLEEHLFR-NINELSGGEKTRAQLSTLTMKRV 161 Query: 182 KLLVLDEPTNHLDEETMAWLEEWVRDYPGTVFYVSHDRTFIERTATAVLELGPQGCRRYP 241 L++LDEPTNHLD E++ WL +W+ + GTV +SHDR ++ AT +LEL RYP Sbjct: 162 DLVLLDEPTNHLDLESIDWLTKWLNQFKGTVLIISHDRQLMDDVATTILELSGGLVTRYP 221 Query: 242 GAYTKYREQKEIEARTLAVQYRXXXXXXXXXXXSIRRYAEWFQQAHRAAGQNDFRRAKAK 301 G YT Y+ QKE E + I +Y W +A A K Sbjct: 222 GNYTAYKHQKEEERVRDERAHARYENRKAELLEMIAQYKGWHLKAKATASVRSPGAQKGA 281 Query: 302 KNVS-RLHAKEASLERLELNRVERPQAAPQLSMKLEGEVFRGDALLDMSGVRYAYGGGAA 360 N++ ++ A+E L +LE NR ++P+ +S++ + L V + Y Sbjct: 282 ANLAIKMKAREQKLRQLEDNRPQKPKEEKSISVRFAADELEAKTWLTCEDVTFGYDN--P 339 Query: 361 LLENFNLTLRRGDRLAVLGPNGAGKSTLLKLIAGLLAPDRGEIRRHPRTRVGYFAQELDN 420 E F+ ++ +G+R+++ GPNG+GK+TLL ++ G AP G I+RHPR ++GYF+Q L+ Sbjct: 340 FYEPFSFSMNKGERISITGPNGSGKTTLLNVLIGERAPHSGVIKRHPRLKIGYFSQTLER 399 Query: 421 LPLSSTILDSLLELPGMTQTEARTILGCFMFRREDVFKRIGDLSLGEKCRVAFLRLYFGR 480 LP + T+L++LL + +TEART+L F+FRR++V + I + S+GEKCR+AFL LYF Sbjct: 400 LPETGTLLEALLANSEIGETEARTLLAHFLFRRDEVHRPITEASMGEKCRIAFLILYFSD 459 Query: 481 ANLLVLDEPTNYLDIDTRERVEEALAAYPGGLVIVSHDRYLH 522 A+LL LDEPTNYLD+ TRE++E AL+ YPGGL+++SHDRY H Sbjct: 460 AHLLALDEPTNYLDVATREQIEAALSVYPGGLLLISHDRYFH 501 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 109/233 (46%), Gaps = 35/233 (15%) Query: 345 LLDMSGVRYAYGGGAALLENFNLTLRRGDRLAVLGPNGAGKSTLLKLIAGLLAPDRGEIR 404 +L + VR+ Y L + + + G+R + G NG+GK+TL +L+ G L P G+I Sbjct: 1 MLAVKQVRFDYDR-KPLFDAVSFEVTAGERAVLFGLNGSGKTTLFRLVTGELTPQAGKI- 58 Query: 405 RHPRTRVGYFAQELDNLPLSSTILDSLL-----------------ELPGMTQTEARTILG 447 VG Q +++ + T+L+ + E+ M E L Sbjct: 59 -ECLGEVGLVRQTIESTDM--TVLEWTMRSDPERYALYEDVSSGDEMRVMRSYERALALD 115 Query: 448 CFMFRRE------------DVFKRIGDLSLGEKCRVAFLRLYFGRANLLVLDEPTNYLDI 495 + +E +F+ I +LS GEK R L R +L++LDEPTN+LD+ Sbjct: 116 VYNLEQEATRALTRLGLEEHLFRNINELSGGEKTRAQLSTLTMKRVDLVLLDEPTNHLDL 175 Query: 496 DTRERVEEALAAYPGGLVIVSHDRYLHAAVANRLLLLERGSRPRLFPGTYEEY 548 ++ + + + L + G ++I+SHDR L VA +L L G R +PG Y Y Sbjct: 176 ESIDWLTKWLNQFKGTVLIISHDRQLMDDVATTILELSGGLVTR-YPGNYTAY 227 >A1HUG2.1 A1HUG2_9FIRM ABC transporter related Length = 627 Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 214/550 (38%), Positives = 308/550 (56%), Gaps = 27/550 (4%) Query: 1 MTLIKVKNIRKEWNGIPLFANVSFEIAEGERALLFGRNGIGKTTLLQGLLGRHPFDEGSV 60 MT+++V+N+ K + +F +V+F + G+R L G NG GKTTLL+ LLG P D G V Sbjct: 1 MTVLRVENLTKAFGIHTVFRDVNFTLRRGDRVGLIGANGAGKTTLLRCLLGFEPADAGRV 60 Query: 61 YYGLPPEEWGVLDQQLELQSDMSALDYVLSGSPELDDLKCKIERLGRLLQEADGGDEA-- 118 LPP +Q + + + ++S ++ + K+ L R + A Sbjct: 61 V--LPPGATVGYVEQETGGGERTLHEELVSAYGDVVAWQAKMRELERAIAAAQDEAAMAA 118 Query: 119 LVAEYGEVYERYLQLDGYGWEAKAEKCLSQLMLDAAVWNLPYRQLSGGQKTRVQLAALLA 178 L+ EY ER+ + GY +EA + + L A + P SGGQKTR+ LA L Sbjct: 119 LLKEYAAAVERFERGGGYEYEAVIRRVTAGLGFSADDLDRPLSTFSGGQKTRISLARALI 178 Query: 179 RQPKLLVLDEPTNHLDEETMAWLEEWVRDYPGTVFYVSHDRTFIERTATAVLELGPQGCR 238 R+P L LDEPTNHLD + WLEE++ YPG V +SHDR F++R AT++LEL Sbjct: 179 RRPDFLFLDEPTNHLDIAMVEWLEEFLTGYPGAVLIISHDRYFLDRVATSILELEDGELT 238 Query: 239 RYPGAYTKYREQKEIEARTLAVQYRXXXXXXXXXXXSIRRYAEWFQQAHRAAGQNDFRRA 298 YPG Y++Y +QK A L + +R YA+ QQA+ A + RR Sbjct: 239 AYPGNYSRYLDQK---AERLEAE--------------LRAYAK--QQAYIAKTEAFIRRY 279 Query: 299 KAKKNVSRLHAKEASLERLELNRVERPQAAPQLSMKLEGEVFRGDALLDMSGVRYAYGGG 358 +A + ++A LERLE R+ P A +L L + + ++S V AYG Sbjct: 280 RAGVKARQARGRQAQLERLE--RLAAPSEAARLDFVLPALGECAERVAELSDVTAAYGD- 336 Query: 359 AALLENFNLTLRRGDRLAVLGPNGAGKSTLLKLIAGLLAPDRGEIRRHPRTRVGYFAQEL 418 + E +L +RRG+ +A++GPNGAGK+TLLKL+ G +AP G ++ R R+GYF+QE Sbjct: 337 HIVFEGLSLLIRRGEGVALVGPNGAGKTTLLKLLTGEVAPTAGRVKLGSRVRIGYFSQEH 396 Query: 419 DNLPLSSTILDSLLELPGMTQTEARTILGCFMFRREDVFKRIGDLSLGEKCRVAFLRLYF 478 ++L + +LD ++ G+ + AR LG F+F +DVFK +GDLS GEK R+A L+L Sbjct: 397 ESLNPLNRVLDEIMLEFGLGEERARQYLGAFLFSGDDVFKTVGDLSGGEKARLALLKLML 456 Query: 479 GRANLLVLDEPTNYLDIDTRERVEEALAAYPGGLVIVSHDRYLHAAVANRLLLLERGSRP 538 AN L+LDEPTN+LDI +E VEEA+ AYPG + VSHDRY VA+R++ L G R Sbjct: 457 TGANFLILDEPTNHLDIPAKEAVEEAILAYPGTFLAVSHDRYFLDKVADRVVELADG-RL 515 Query: 539 RLFPGTYEEY 548 + G Y Y Sbjct: 516 TEYAGNYSYY 525 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 101/247 (40%), Gaps = 43/247 (17%) Query: 3 LIKVKNIRKEWNGIPLFANVSFEIAEGERALLFGRNGIGKTTLLQGLLGRHPFDEGSVYY 62 + ++ ++ + +F +S I GE L G NG GKTTLL+ L G G V Sbjct: 324 VAELSDVTAAYGDHIVFEGLSLLIRRGEGVALVGPNGAGKTTLLKLLTGEVAPTAGRVKL 383 Query: 63 GLPPEEWGVLDQQLELQSDMSALDYVLSGSPELDDLKCKIERLGRLLQEADGGDEALVAE 122 G G Q+ E + L R+L E ++ E Sbjct: 384 G-SRVRIGYFSQEHE-----------------------SLNPLNRVLDE-------IMLE 412 Query: 123 YGEVYERYLQLDGYGWEAKAEKCLSQLMLDAAVWNLPYRQLSGGQKTRVQLAALLARQPK 182 +G ER A + L + LSGG+K R+ L L+ Sbjct: 413 FGLGEER------------ARQYLGAFLFSGDDVFKTVGDLSGGEKARLALLKLMLTGAN 460 Query: 183 LLVLDEPTNHLDEETMAWLEEWVRDYPGTVFYVSHDRTFIERTATAVLELGPQGCRRYPG 242 L+LDEPTNHLD +EE + YPGT VSHDR F+++ A V+EL Y G Sbjct: 461 FLILDEPTNHLDIPAKEAVEEAILAYPGTFLAVSHDRYFLDKVADRVVELADGRLTEYAG 520 Query: 243 AYTKYRE 249 Y+ YRE Sbjct: 521 NYSYYRE 527 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,448,061,351 Number of extensions: 146666924 Number of successful extensions: 980984 Number of sequences better than 1.0e-05: 44390 Number of HSP's gapped: 923444 Number of HSP's successfully gapped: 52052 Length of query: 608 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 466 Effective length of database: 1,722,912,073 Effective search space: 802877026018 Effective search space used: 802877026018 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)