BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0397.0033.p
         (163 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DKP6.1 B1DKP6_9BACL Putative uncharacterized protein                 75   2e-12
B3K530.1 B3K530_9BACI YxeD                                             62   2e-08

>B1DKP6.1 B1DKP6_9BACL Putative uncharacterized protein
          Length = 141

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 58/99 (58%), Gaps = 18/99 (18%)

Query: 40  NVAKLEELADRERKASQMIQQALQGHQTAVQQLQHASQLVRQVEQTAQTSSFGTGVQGFS 99
           N  +LEELA RE+KA+Q+IQ ALQGHQTA+QQLQ  SQ+ RQVE    T           
Sbjct: 44  NAQRLEELAAREQKAAQIIQTALQGHQTAIQQLQQVSQICRQVENMIHTQ---------- 93

Query: 100 TGSQGFNPSFSPSFN---PAYNSSFSQQPSQMMHSPLNS 135
                FN S S SFN   P+YN+ ++ Q  Q  +S  NS
Sbjct: 94  -----FNSSVSQSFNTHTPSYNTGYASQQPQHSYSNFNS 127


>B3K530.1 B3K530_9BACI YxeD
          Length = 120

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 56/104 (53%), Gaps = 1/104 (0%)

Query: 2   NSNISSQVSQCEXXXXXXXXXXXXXXXXXXXXXXXXXXNVAKLEELADRERKASQMIQQA 61
           NS IS Q+ QCE                          N A+LEELA RER+A+QMIQ A
Sbjct: 8   NSQISQQIRQCEQILQQLTQQTQQGSAMYQQLMQQEQQNAARLEELAQRERQAAQMIQTA 67

Query: 62  LQGHQTAVQQLQHASQLVRQVEQTAQTSSFGTGVQGFSTGSQGF 105
           LQGHQ A+QQ Q  SQ+V+QVE + Q  +    +Q  S G QGF
Sbjct: 68  LQGHQQAMQQYQQISQIVKQVEYSVQAHNQTQHIQP-SYGQQGF 110


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.309    0.118    0.316 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 597,078,792
Number of extensions: 19064337
Number of successful extensions: 71804
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 71802
Number of HSP's successfully gapped: 2
Length of query: 163
Length of database: 3,060,696,203
Length adjustment: 123
Effective length of query: 40
Effective length of database: 1,901,911,358
Effective search space: 76076454320
Effective search space used: 76076454320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 125 (52.8 bits)