BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0031.p (353 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B4CZ94.1 B4CZ94_9BACT Band 7 protein 352 3e-95 B1ZMI4.1 B1ZMI4_OPITP Band 7 protein 348 5e-94 B3Q4I2.1 B3Q4I2_RHIE6 Hypothetical conserved protein 335 6e-90 Q2JZR6.1 Q2JZR6_RHIEC Hypothetical conserved protein 334 8e-90 A5ELR7.1 A5ELR7_BRASB Putative uncharacterized protein 311 8e-83 >B4CZ94.1 B4CZ94_9BACT Band 7 protein Length = 341 Score = 352 bits (903), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 175/334 (52%), Positives = 241/334 (72%), Gaps = 1/334 (0%) Query: 3 MFGFRFVKFQPSEYVLKVKNGKVVREGVGLSFXXXXXXXXXXXXXXXXIDVPFMFEEITN 62 MFG RF+K P+ Y+L+ +NG++VREG GLSF D PF+FEE T Sbjct: 1 MFGIRFIKTPPTTYLLQFRNGRIVREGTGLSFFYYAPTASLVAIPVGSSDEPFIFEETTA 60 Query: 63 DYQTVTVQGQLTYRIVDYRKTTQILNYTYNLRKNTYLSDDPGKLAQRVINIAKVLTKKQL 122 D+QT+T+QGQ+TYR+ + RK ++N+T YLS+DP KL QRVIN+ VL + +L Sbjct: 61 DHQTITLQGQVTYRVAEPRKLAGLMNFTLA-PNGRYLSEDPEKLPQRVINLVHVLARGEL 119 Query: 123 EQLPLREAIQSSERLAKTITQEIGRNEEIEKLGIELMGLSILAIVPNKETLRALEAQARE 182 E+LPLR+A++S+E + + + + + EI LGI+++GLSILAI P +T RALEA+ RE Sbjct: 120 EKLPLRDAMRSAEMIVGNVRKALETSPEISALGIQVIGLSILAIKPTPDTARALEAETRE 179 Query: 183 EILRSADNALYERRNASIEQERRVKENELNTEIAVETKKKQIRETQLDAERSVKQKQNAM 242 ++L AD A+Y RRNA++EQER +KENELNTEIAVE KK+QIRETQ+DAER+V++K++ + Sbjct: 180 QLLLKADEAIYLRRNAAVEQERAIKENELNTEIAVENKKRQIRETQMDAERAVQEKKHLL 239 Query: 243 KEEQLSFDTALEAKKQELIGLTVANQRAEADAKAYELSAVMNSLQGVAPGVLQALANVGM 302 ++E L LE K++ L+ L+ N R EADA+AY +SA M +L P +LQALAN GM Sbjct: 240 EDEALEAGITLEEKRKGLVTLSAENARTEADARAYGMSATMQALGSADPRILQALANNGM 299 Query: 303 KPDKLIAIAFQELAENAGKIGQLNISPDLLQGLM 336 KP++LIA+AFQE+A A KIGQLNISPDLL+ L+ Sbjct: 300 KPEQLIAVAFQEIAGRADKIGQLNISPDLLRELL 333 >B1ZMI4.1 B1ZMI4_OPITP Band 7 protein Length = 339 Score = 348 bits (892), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 169/334 (50%), Positives = 236/334 (70%) Query: 3 MFGFRFVKFQPSEYVLKVKNGKVVREGVGLSFXXXXXXXXXXXXXXXXIDVPFMFEEITN 62 MFGFRF+K QP+ Y+L+ + G +VREG GL+F +VPF+FEE T Sbjct: 1 MFGFRFIKVQPTTYLLQYRKGHLVREGTGLAFFYYGPTTSLVAVPTASNEVPFIFEETTA 60 Query: 63 DYQTVTVQGQLTYRIVDYRKTTQILNYTYNLRKNTYLSDDPGKLAQRVINIAKVLTKKQL 122 D+Q VT+QGQ+TYR+ D +K ++N+T +Y SDDP KL QR+INI V + Q+ Sbjct: 61 DFQKVTIQGQITYRVADPKKLAALMNFTLAPNGQSYASDDPEKLPQRLINIVNVHARAQI 120 Query: 123 EQLPLREAIQSSERLAKTITQEIGRNEEIEKLGIELMGLSILAIVPNKETLRALEAQARE 182 ++LPLR+A++ S+ L + + ++ E+ LG+E++G SILAI P ET RALEA+ RE Sbjct: 121 QRLPLRQAVRESDGLVEALRPKLVAAPEVAALGLEILGFSILAIKPTPETARALEAETRE 180 Query: 183 EILRSADNALYERRNASIEQERRVKENELNTEIAVETKKKQIRETQLDAERSVKQKQNAM 242 ++L+ AD A++ RRNA++E ER +KENELNTE AVE KK+QIRET++DAER+V++KQ + Sbjct: 181 QLLKEADEAIFRRRNAAVENERAIKENELNTENAVELKKRQIRETKMDAERAVQEKQRLL 240 Query: 243 KEEQLSFDTALEAKKQELIGLTVANQRAEADAKAYELSAVMNSLQGVAPGVLQALANVGM 302 +E +++ ALE KK++L+ LT N R EADA+AY + A M +L P VL ALAN GM Sbjct: 241 REAEMAASIALEQKKKDLVELTATNARGEADARAYGIEATMKALGTADPRVLAALANAGM 300 Query: 303 KPDKLIAIAFQELAENAGKIGQLNISPDLLQGLM 336 P++LIA+AFQ +A+ A KIGQLNISPDLL+ LM Sbjct: 301 NPEQLIAVAFQGIADKADKIGQLNISPDLLRELM 334 >B3Q4I2.1 B3Q4I2_RHIE6 Hypothetical conserved protein Length = 344 Score = 335 bits (858), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 160/334 (47%), Positives = 242/334 (72%), Gaps = 1/334 (0%) Query: 3 MFGFRFVKFQPSEYVLKVKNGKVVREGVGLSFXXXXXXXXXXXXXXXXIDVPFMFEEITN 62 MFG RF+K +P++YV++ +NG VREG GL+F ++ PF+F +T+ Sbjct: 1 MFGLRFIKTEPTQYVIQYQNGTAVREGAGLAFWHFAPSSSLVLVPTASVNDPFIFPLVTS 60 Query: 63 DYQTVTVQGQLTYRIVDYRKTTQILNYTYNLRKNTYLSDDPGKLAQRVINIAKVLTKKQL 122 D+Q VTVQGQ+TYRI + R+T +LN+T + RK Y+S+DP KL+ RVI+ +V + ++ Sbjct: 61 DFQEVTVQGQITYRIAEPRRTAALLNFTLD-RKGRYVSEDPQKLSTRVIDRVQVAMRAEV 119 Query: 123 EQLPLREAIQSSERLAKTITQEIGRNEEIEKLGIELMGLSILAIVPNKETLRALEAQARE 182 + L L+E + S E L + + + + IE LG+E++GLS+LA++P ET +ALEAQARE Sbjct: 120 QMLSLKEVLASGEALVAGVAEALRVHPTIEALGLEILGLSLLAVMPKAETAKALEAQARE 179 Query: 183 EILRSADNALYERRNASIEQERRVKENELNTEIAVETKKKQIRETQLDAERSVKQKQNAM 242 +LR AD A+Y RRNA+IEQER +KENE+ TEI +E K++Q+RE Q++AER+V+++Q + Sbjct: 180 ALLRQADEAIYSRRNAAIEQERTIKENEIATEITLENKRRQVREAQMEAERAVQERQLQI 239 Query: 243 KEEQLSFDTALEAKKQELIGLTVANQRAEADAKAYELSAVMNSLQGVAPGVLQALANVGM 302 + E+++ ALE + ++L+ L N +AEADA+AY L+A+M S + P VLQALA+VGM Sbjct: 240 RREEMAGKIALEEQNRDLVTLAATNAKAEADAQAYALTAMMKSFEQADPKVLQALASVGM 299 Query: 303 KPDKLIAIAFQELAENAGKIGQLNISPDLLQGLM 336 KP +L+A+AF++LA+NA KIGQLN+SPDLL+ ++ Sbjct: 300 KPGQLMALAFRDLADNATKIGQLNVSPDLLREIL 333 >Q2JZR6.1 Q2JZR6_RHIEC Hypothetical conserved protein Length = 344 Score = 334 bits (856), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 159/334 (47%), Positives = 241/334 (72%), Gaps = 1/334 (0%) Query: 3 MFGFRFVKFQPSEYVLKVKNGKVVREGVGLSFXXXXXXXXXXXXXXXXIDVPFMFEEITN 62 MFG RF+K +P++YV++ +NGK VREG GL+F ++ PF+F +T+ Sbjct: 1 MFGLRFIKTEPTQYVIQYQNGKAVREGAGLAFWHFSPSSSLVLVPTASVNDPFIFPLVTS 60 Query: 63 DYQTVTVQGQLTYRIVDYRKTTQILNYTYNLRKNTYLSDDPGKLAQRVINIAKVLTKKQL 122 D+Q VTVQGQ+TYRI + R+T +LN+T + RK Y+S+DP KL+ RVI+ +V + ++ Sbjct: 61 DFQEVTVQGQITYRIAEPRRTAALLNFTLD-RKGHYVSEDPQKLSTRVIDRVQVAMRAEV 119 Query: 123 EQLPLREAIQSSERLAKTITQEIGRNEEIEKLGIELMGLSILAIVPNKETLRALEAQARE 182 + L L+E + S E L + + + IE LG+E++GLS+LA++P ET +ALEA ARE Sbjct: 120 QTLSLKEVLASGEALVAGVADALKVHPTIEALGLEILGLSLLAVMPKAETAKALEAHARE 179 Query: 183 EILRSADNALYERRNASIEQERRVKENELNTEIAVETKKKQIRETQLDAERSVKQKQNAM 242 +LR AD A+Y RRNA+IEQER +KENE+ TEI +E K++Q+RE Q++AER+V+++Q + Sbjct: 180 ALLRQADEAIYSRRNAAIEQERTIKENEIATEITLENKRRQVREAQMEAERAVQERQLQI 239 Query: 243 KEEQLSFDTALEAKKQELIGLTVANQRAEADAKAYELSAVMNSLQGVAPGVLQALANVGM 302 + ++++ ALE + ++L+ L N RAEADA+AY L+A+M S + P VLQALA+VGM Sbjct: 240 RRDEMAGKIALEEQNRDLVTLAATNARAEADAQAYALTAMMKSFEQADPKVLQALASVGM 299 Query: 303 KPDKLIAIAFQELAENAGKIGQLNISPDLLQGLM 336 +P +L+A+AF++LA+NA KIGQLN+SPDLL+ ++ Sbjct: 300 QPGQLMALAFRDLADNATKIGQLNVSPDLLREIL 333 >A5ELR7.1 A5ELR7_BRASB Putative uncharacterized protein Length = 345 Score = 311 bits (796), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 155/334 (46%), Positives = 227/334 (67%) Query: 3 MFGFRFVKFQPSEYVLKVKNGKVVREGVGLSFXXXXXXXXXXXXXXXXIDVPFMFEEITN 62 MFG RF+K QP+ Y+LK + G VV EG GLS D F+F++I Sbjct: 1 MFGIRFIKAQPTTYLLKYRAGAVVEEGAGLSTFYYGPATSLVAIPIGSRDAAFIFQQIAR 60 Query: 63 DYQTVTVQGQLTYRIVDYRKTTQILNYTYNLRKNTYLSDDPGKLAQRVINIAKVLTKKQL 122 D+QT+T+QGQ+TYRI + +K +LN+T TY SDDP +L QRV+ +VL ++ + Sbjct: 61 DFQTLTIQGQVTYRIGEPKKAAAMLNFTLKRDGKTYESDDPEELPQRVLGAVEVLAQQAV 120 Query: 123 EQLPLREAIQSSERLAKTITQEIGRNEEIEKLGIELMGLSILAIVPNKETLRALEAQARE 182 + + L+EA+++S+R+A+ I + R +I+ LG+E++G+++ A+ P ET +ALEA+ARE Sbjct: 121 KDMTLKEALRASDRIAEAIATGLQRRADIDALGLEILGVAVRAVKPTPETAKALEAEARE 180 Query: 183 EILRSADNALYERRNASIEQERRVKENELNTEIAVETKKKQIRETQLDAERSVKQKQNAM 242 IL++AD A++ RRN ++E+ER ++E+EL+TEIAVE KK+ IRETQ+DAE SV K N + Sbjct: 181 AILKTADEAIFARRNFAVERERAIRESELDTEIAVEQKKRAIRETQMDAEASVAAKTNEL 240 Query: 243 KEEQLSFDTALEAKKQELIGLTVANQRAEADAKAYELSAVMNSLQGVAPGVLQALANVGM 302 +E + D LEA++++ + L AN R ADA+AY + A+M +GV V+QALA GM Sbjct: 241 REAGMVADIGLEARRKDFVALNAANTRTLADAEAYRVGALMKIFEGVDTRVIQALAATGM 300 Query: 303 KPDKLIAIAFQELAENAGKIGQLNISPDLLQGLM 336 +P +LIA AF LAE A KIGQLN+SP+LL LM Sbjct: 301 QPGQLIAQAFSGLAEKAEKIGQLNVSPELLNSLM 334 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.131 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,591,604,077 Number of extensions: 56284778 Number of successful extensions: 269635 Number of sequences better than 1.0e-05: 40 Number of HSP's gapped: 269864 Number of HSP's successfully gapped: 40 Length of query: 353 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 216 Effective length of database: 1,770,017,148 Effective search space: 382323703968 Effective search space used: 382323703968 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)