BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0397.0029.p
         (143 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1HY61.1 B1HY61_LYSSC YbbB, ABC-type Fe3+-hydroxamate transport ...   109   7e-23
B1HY62.1 B1HY62_LYSSC Ferrichrome binding protein-like protein        103   6e-21
B1DE00.1 B1DE00_9BACL Periplasmic binding protein                      85   2e-15
B1DDZ9.1 B1DDZ9_9BACL Transcriptional regulator, AraC family           78   3e-13
A3I5C4.1 A3I5C4_9BACI Putative uncharacterized protein                 77   4e-13

>B1HY61.1 B1HY61_LYSSC YbbB, ABC-type Fe3+-hydroxamate transport system,
           periplasmic component
          Length = 542

 Score =  109 bits (273), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 49/123 (39%), Positives = 78/123 (63%), Gaps = 1/123 (0%)

Query: 1   MWQRLYSDILRPGETASALFYDHGNHLFAMGMSGLSTALYAPGGLQPTEEIQDILDQELG 60
           MWQ+L + ++ PGETA+ L +DHG  L+ MG +GLS AL+ P G  P ++++ +L    G
Sbjct: 402 MWQQLQT-VVAPGETATVLTFDHGQRLYVMGCTGLSPALFHPDGFTPHQQVKKLLQAGKG 460

Query: 61  FAEVDPARLHSYAGDRVFMLILEREDSRTAMEQLLQSPVWSSLPAVRKGQAYQLDGTKWN 120
           + E+    L  Y GDR+F+L+ ++ +S+ A  +L+ S +W +L AV+    Y +D TKWN
Sbjct: 461 YKEILIDHLPKYVGDRIFLLLSDKPESQMATMELMNSDIWKNLKAVQNNHFYLVDATKWN 520

Query: 121 SGD 123
             D
Sbjct: 521 YND 523


>B1HY62.1 B1HY62_LYSSC Ferrichrome binding protein-like protein
          Length = 256

 Score =  103 bits (256), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 75/122 (61%), Gaps = 1/122 (0%)

Query: 1   MWQRLYSD-ILRPGETASALFYDHGNHLFAMGMSGLSTALYAPGGLQPTEEIQDILDQEL 59
           MW+ L +D  ++  ETAS L Y  G+ LF M  +GLS  LY    L+P  +IQ ILD   
Sbjct: 117 MWESLVADGTVKADETASVLTYYPGDRLFVMARAGLSQVLYDSNVLKPGNKIQKILDDGT 176

Query: 60  GFAEVDPARLHSYAGDRVFMLILEREDSRTAMEQLLQSPVWSSLPAVRKGQAYQLDGTKW 119
           GFAE+    L  YAGDR+F+L    ++++ + ++++ SP+W SLPAV+ G  Y +D  K 
Sbjct: 177 GFAEISTELLPEYAGDRIFILTPVDDEAKQSTKEMMDSPIWKSLPAVKNGHVYMIDIQKS 236

Query: 120 NS 121
           +S
Sbjct: 237 DS 238


>B1DE00.1 B1DE00_9BACL Periplasmic binding protein
          Length = 323

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 64/112 (57%)

Query: 1   MWQRLYSDILRPGETASALFYDHGNHLFAMGMSGLSTALYAPGGLQPTEEIQDILDQELG 60
           MW+ +    +   ETA+      G  LFAM  +GLS  LY  GG++PT  +Q  LD+  G
Sbjct: 183 MWKEIREAGIGEEETATVFTMYPGKRLFAMANTGLSQILYDEGGMKPTPMVQKALDEGQG 242

Query: 61  FAEVDPARLHSYAGDRVFMLILEREDSRTAMEQLLQSPVWSSLPAVRKGQAY 112
           F E+   +L  YAGD VF+L    E++   M++L +S VW+ L AV+ G+ Y
Sbjct: 243 FVEISLEKLSEYAGDHVFVLTPIPEEAVNDMKELEKSQVWNGLDAVKNGKVY 294


>B1DDZ9.1 B1DDZ9_9BACL Transcriptional regulator, AraC family
          Length = 561

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 4/123 (3%)

Query: 1   MWQRLYSDILRPGETASALFYDHGNHLFAMGMSGLSTALYAPGGLQPTEEIQDILDQELG 60
           MW++ +      GE AS      G+  F MG  GLS  L+       T +IQ+++ +   
Sbjct: 427 MWKQRFL----AGEKASVFICHRGHKWFVMGRLGLSELLHGMDENSLTGQIQELIAESKA 482

Query: 61  FAEVDPARLHSYAGDRVFMLILEREDSRTAMEQLLQSPVWSSLPAVRKGQAYQLDGTKWN 120
           +  ++P  +  YAGD VF+ +     +R   EQ+LQS +W S+PAVR GQA+ ++ ++WN
Sbjct: 483 YLMINPQDIAKYAGDIVFVPMPVNASARETTEQMLQSDMWLSIPAVRNGQAFVVEESRWN 542

Query: 121 SGD 123
             D
Sbjct: 543 MYD 545


>A3I5C4.1 A3I5C4_9BACI Putative uncharacterized protein
          Length = 287

 Score = 77.4 bits (189), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 7/125 (5%)

Query: 1   MWQRLYSDILRPGETASALFYDHGNHLFAMGMSGLSTALYAPGGLQPTEEIQ-DILDQE- 58
           M+++L    L  GETA+ +FY  G  L+ MG   L   +Y   G      +Q +I+D E 
Sbjct: 150 MFEKLQ---LAEGETAT-VFYQLGKTLYVMGDRSLGAIIYGENGFAVPPAVQKNIIDVEG 205

Query: 59  LGFAEVDPARLHSYAGDRVFMLILEREDSRTAMEQLLQSPVWSSLPAVRKGQAYQLDGTK 118
           + F  V    L  +AGD +F+++ E ++S +  ++LLQSP+W +LPAV+KG  Y +   +
Sbjct: 206 VSFVTVSEEVLSQFAGDHLFVIVQEDDESESEADRLLQSPIWGTLPAVQKGNVYVI-ANE 264

Query: 119 WNSGD 123
           WN+ +
Sbjct: 265 WNTDE 269


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 819,742,863
Number of extensions: 31100834
Number of successful extensions: 74652
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 74726
Number of HSP's successfully gapped: 7
Length of query: 143
Length of database: 3,060,696,203
Length adjustment: 106
Effective length of query: 37
Effective length of database: 2,062,068,613
Effective search space: 76296538681
Effective search space used: 76296538681
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)