BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0397.0026.p (268 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q67RV6.1 Q67RV6_SYMTH Putative glucose kinase 133 2e-29 Q8R7I9.1 Q8R7I9_THETN Transcriptional regulator 124 1e-26 A9KIQ9.1 A9KIQ9_CLOPH ROK family protein 111 6e-23 A9BHR1.1 A9BHR1_PETMO ROK family protein 94 1e-17 Q6NGA8.1 Q6NGA8_CORDI Glucose kinase 87 1e-15 >Q67RV6.1 Q67RV6_SYMTH Putative glucose kinase Length = 308 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 89/266 (33%), Positives = 124/266 (46%), Gaps = 16/266 (6%) Query: 5 YIGADIGGTGIKAAVIDERGGIITRSSRPTPVADGAKGILLALKGV-ISGLLADGPEVSG 63 Y+G DIGGTGIKAA++D +G I+ R+ PT A+GA +L ++ + ++ + G V Sbjct: 3 YLGIDIGGTGIKAAIVDGQGIILHRAEVPTGAAEGADAVLQRVRRLGLTLVERAGQPVEA 62 Query: 64 IGIGTAGRVDPEEGVVLYATDNLPGWTGMRLAAEIEAEFXXXXXXXXXXXXXXXXXXXXX 123 G+G+ GR+D G V++A+ NLPGWTG L AE+ F Sbjct: 63 CGVGSPGRIDHLRGHVIFASGNLPGWTGTALGAELHQTFGVPVVVDNDVNAAAVGEAWIG 122 Query: 124 XXXXXXDYAMXXXXXXXXXXXXHKNQPVSGKQGAAGEFGHMVLYPGGIPCSCGQSGCTEH 183 D+ M + G + AGE GHM LYPGG PC CG GC E Sbjct: 123 AARGSSDFLMLTLGTGVGGALTVHGRLWRGARWGAGEVGHMALYPGGDPCPCGGRGCAER 182 Query: 184 YLSGRALNRLAAGANEGWDS-----------RRLLXXXXXXXXXXXXVMEVYMNDLSLTV 232 Y+S +AL R ANEG + R +E + DL+L + Sbjct: 183 YVSSKALTRR---ANEGLVAGHPFRGVRDVIRTAEQGDGERQRAARLAVEQWTADLALFL 239 Query: 233 HNIQSFFDPGAIILGGGVAESHPLWW 258 N+Q FDP I++GGG+ WW Sbjct: 240 MNLQMAFDPQMIVVGGGITRL-GYWW 264 >Q8R7I9.1 Q8R7I9_THETN Transcriptional regulator Length = 296 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 122/256 (47%), Gaps = 5/256 (1%) Query: 6 IGADIGGTGIKAAVIDERGGIITRSSRPTPVADGAKGILLALKGVISGLLADGPEVSGIG 65 IG DIGGT I +IDERG ++ + T G + IL L I L+ +V GIG Sbjct: 4 IGVDIGGTKILGGLIDERGNLLEETLVYTKAHLGREKILENLFIAIDKLI--DKDVKGIG 61 Query: 66 IGTAGRVDPEEGVVLYATDNLPGWTGMRLAAEIEAEFXXXXXXXXXXXXXXXXXXXXXXX 125 IG+AGR++ +EG+V YATDNLPGWTG L +E + Sbjct: 62 IGSAGRINFKEGIVEYATDNLPGWTGCNLKQLLEDRYKIPVIADNDVNAAVIGEIWQGAG 121 Query: 126 XXXXDYAMXXXXXXXXXXXXHKNQPVSGKQGAAGEFGHMVLYPGGIPCSCGQSGCTEHYL 185 D M + + + G +AGE GHM+LYP G C+CGQ GC E Y+ Sbjct: 122 RGYKDIVMIAIGTGVGGAIVYNGEVIRGGSWSAGEIGHMILYPKGRQCNCGQRGCLEQYV 181 Query: 186 SGRALNRLAAGANEGWD---SRRLLXXXXXXXXXXXXVMEVYMNDLSLTVHNIQSFFDPG 242 SG A+ R + ++ + + ++ ++N LS+ + ++++ DP Sbjct: 182 SGTAIARTYSEVSKEKKIAGAEEVFLLAEKGDKMALEIVNDFVNSLSIAILSLKNLLDPE 241 Query: 243 AIILGGGVAESHPLWW 258 I+GGGV + +WW Sbjct: 242 IFIIGGGVIGAKRVWW 257 >A9KIQ9.1 A9KIQ9_CLOPH ROK family protein Length = 299 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 111/246 (45%), Gaps = 3/246 (1%) Query: 6 IGADIGGTGIKAAVIDERGGIITRSSRPTPVADGAKGILLALKGVISGLLADGPEVSGIG 65 I DIGGT IK A D +I RP+ + G +L + +I+ + + IG Sbjct: 4 IALDIGGTAIKYAYFD-GDDLIFDDVRPSEASLGGDKVLENIISIITEI-GNQHSYDTIG 61 Query: 66 IGTAGRVDPEEGVVLYATDNLPGWTGMRLAAEIEAEFXXXXXXXXXXXXXXXXXXXXXXX 125 I TAG+VD G ++YA DN+P +TGM L +E +F Sbjct: 62 ISTAGQVDSINGTIVYANDNIPNYTGMELKKILEDKFKVPVSVENDVNAAAIGEAIYGAG 121 Query: 126 XXXXDYAMXXXXXXXXXXXXHKNQPVSGKQGAAGEFGHMVLYPGGIPCSCGQSGCTEHYL 185 D+ + G QG A E GHM+++PGG+PC CG GC E Y Sbjct: 122 KGENDFLCLTYGTGIGGAIFLNQKLYKGAQGVAAEMGHMMIHPGGLPCGCGSFGCYEQYA 181 Query: 186 SGRALNRLA-AGANEGWDSRRLLXXXXXXXXXXXXVMEVYMNDLSLTVHNIQSFFDPGAI 244 S AL R A A + E ++ + + +++ ++ ++S + N+ F+P I Sbjct: 182 STTALIRTAKAHSPEFYNGKAIFSAFDHDSKDAKRLIDQWVKEISYGLVNLIYIFNPSLI 241 Query: 245 ILGGGV 250 +LGGG+ Sbjct: 242 VLGGGI 247 >A9BHR1.1 A9BHR1_PETMO ROK family protein Length = 316 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 107/263 (40%), Gaps = 17/263 (6%) Query: 6 IGADIGGTGIKAAVIDERGGIITRSSRPTPVADGAKGILLALKGVISGLLADGPEVSGIG 65 +G D+GGT IKA ++DE+ GII + SRPT V G ++ + + L + E S IG Sbjct: 4 VGIDLGGTEIKAGLVDEKKGIIKKISRPTEVEMGNAQVIANITKTVKD-LTENTEFSAIG 62 Query: 66 IGTAGRVDPEEGVVLYATDNLPGWTGMRLAAEIEAEFXXXXXXXXXXXXXXXXXXXXXXX 125 IG+ G +D + G+V ++ N P W L I+ Sbjct: 63 IGSPGSIDRKNGIVRFSP-NFPNWRNFELVRLIKENINVDVFLENDANAFALGEWYFGKA 121 Query: 126 XXXXDYAMXXXXXXXXXXXXHKNQPVSGKQGAAGEFGHMVLYPGGIPCSCGQSGCTE--- 182 D+ N ++GK G A E GH+V+ P G C CG GC E Sbjct: 122 KGLHDFIALTIGTGIGSGVVCNNTFLTGKDGLAPELGHVVVVPNGPQCGCGNRGCVEATS 181 Query: 183 --HYLSGRALNRL----------AAGANEGWDSRRLLXXXXXXXXXXXXVMEVYMNDLSL 230 Y++ A N + AG E +S+ + V ++ L+ Sbjct: 182 SAKYIALEAKNLIDRYPDSLVLKLAGKKEKIESKHVFQAYEKNDPLARVVCNFAIDALAR 241 Query: 231 TVHNIQSFFDPGAIILGGGVAES 253 + F+P II+GGG++ + Sbjct: 242 AIGGYVHAFNPEKIIIGGGLSRA 264 >Q6NGA8.1 Q6NGA8_CORDI Glucose kinase Length = 317 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 74/270 (27%), Positives = 113/270 (41%), Gaps = 25/270 (9%) Query: 6 IGADIGGTGIKAAVIDERGGIITRSSRPTPVADGAKGILLALKGVIS--GLLADGPEVSG 63 +G DIGGT ++AA + + G II S PTP + A KG+IS L + EVS Sbjct: 10 VGFDIGGTNMRAAAVTDSGLIIDSVSVPTPKSSEALE-----KGIISLVAQLREKHEVSA 64 Query: 64 IGIGTAGRVDPEEGVVLYATDNLPGWTGMRLAAEIEAEFXXXXXXXXXXXXXXXXXXXXX 123 +G+ AG +DP+ +V +A +LP W + AE+E Sbjct: 65 VGLAVAGFLDPDCEIVRFAP-HLP-WRDRPVRAELEDALGLPVRLEHDANSAAWGEYRFG 122 Query: 124 XXXXXXDYAMXXXXXXXXXXXXHKNQPVSGKQGAAGEFGHMVLYPGGIPCSCGQSGCTEH 183 ++ + H+ + G G A EFGH+ + P G CSCG+SGC E Sbjct: 123 AARGSQNWVLFAVGTGIGATLMHEGEIYRGAFGTAPEFGHLTVVPQGRQCSCGKSGCLER 182 Query: 184 YLSGRALN---RLAAGANEGWDS-------------RRLLXXXXXXXXXXXXVMEVYMND 227 Y SG A+ R A+ G DS + + V + + Sbjct: 183 YCSGTAIEATARELLDADRGRDSMVAAAYHSGTLSGKTVTEAARQGDVFAIEVFDDFAEW 242 Query: 228 LSLTVHNIQSFFDPGAIILGGGVAESHPLW 257 + + + DPG I++GGG++ S L+ Sbjct: 243 MGRALSIVCDVLDPGQIVIGGGLSTSSDLF 272 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.139 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,378,588,866 Number of extensions: 50305999 Number of successful extensions: 130375 Number of sequences better than 1.0e-05: 573 Number of HSP's gapped: 130904 Number of HSP's successfully gapped: 594 Length of query: 268 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 135 Effective length of database: 1,807,701,208 Effective search space: 244039663080 Effective search space used: 244039663080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)